RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 PATL2C9JE40 543 aaKnown RBP3.51□□□□□ -1.85
MCF2-208ENST00000519895 EPB41L2O43491 1005 aaKnown RBP3.51□□□□□ -1.85
MCF2-208ENST00000519895 TFRCP02786 760 aaKnown RBP3.51□□□□□ -1.85
MCF2-208ENST00000519895 VIL1P09327 827 aaKnown RBP3.51□□□□□ -1.85
MCF2-208ENST00000519895 RING1Q06587 406 aa3.51□□□□□ -1.85
MCF2-208ENST00000519895 FKBP5Q13451 457 aaPredicted RBP3.51□□□□□ -1.85
MCF2-208ENST00000519895 RSPO4Q2I0M5 234 aaPredicted RBP3.51□□□□□ -1.85
MCF2-208ENST00000519895 TMCO4Q5TGY1 634 aa3.51□□□□□ -1.85
MCF2-208ENST00000519895 STRIP1Q5VSL9 837 aa3.51□□□□□ -1.85
MCF2-208ENST00000519895 SPRYD7Q5W111 196 aa3.51□□□□□ -1.85
MCF2-208ENST00000519895 FBXO33Q7Z6M2 555 aa3.51□□□□□ -1.85
MCF2-208ENST00000519895 DDX1Q92499 740 aaKnown RBP3.51□□□□□ -1.85
MCF2-208ENST00000519895 MIS18AQ9NYP9 233 aa3.51□□□□□ -1.85
MCF2-208ENST00000519895 RCAN3Q9UKA8 241 aa3.51□□□□□ -1.85
MCF2-208ENST00000519895 MGAMO43451 1857 aa3.51□□□□□ -1.85
MCF2-208ENST00000519895 ADAMTS20P59510 1910 aa3.51□□□□□ -1.85
MCF2-208ENST00000519895 EYA2O00167 538 aa3.51□□□□□ -1.85
MCF2-208ENST00000519895 COL6A1P12109 1028 aa3.51□□□□□ -1.85
MCF2-208ENST00000519895 EIF2S2P20042 333 aaKnown RBP3.51□□□□□ -1.85
MCF2-208ENST00000519895 IRF5Q13568 498 aa3.51□□□□□ -1.85
MCF2-208ENST00000519895 SHHQ15465 462 aa3.51□□□□□ -1.85
MCF2-208ENST00000519895 KRT26Q7Z3Y9 468 aa3.51□□□□□ -1.85
MCF2-208ENST00000519895 DCPSQ96C86 337 aaKnown RBP3.51□□□□□ -1.85
MCF2-208ENST00000519895 GMLQ99445 158 aa3.51□□□□□ -1.85
MCF2-208ENST00000519895 ZBTB40Q9NUA8 1239 aa3.51□□□□□ -1.85
MCF2-208ENST00000519895 SRRDQ9UH36 339 aa3.51□□□□□ -1.85
MCF2-208ENST00000519895 ZNRF3Q9ULT6 936 aa3.51□□□□□ -1.85
MCF2-208ENST00000519895 FAM50BQ9Y247 325 aa3.51□□□□□ -1.85
MCF2-208ENST00000519895 POLR2AP24928 1970 aaKnown RBP3.51□□□□□ -1.85
MCF2-208ENST00000519895 UQCRFS1P1P0C7P4 283 aa3.5□□□□□ -1.85
MCF2-208ENST00000519895 UBTFL1P0CB47 393 aaPredicted RBP3.5□□□□□ -1.85
MCF2-208ENST00000519895 TRIM27P14373 513 aa3.5□□□□□ -1.85
MCF2-208ENST00000519895 ARID4AP29374 1257 aaPredicted RBP3.5□□□□□ -1.85
MCF2-208ENST00000519895 HIRAP54198 1017 aaPredicted RBP3.5□□□□□ -1.85
MCF2-208ENST00000519895 ATXN1P54253 815 aaKnown RBP3.5□□□□□ -1.85
MCF2-208ENST00000519895 IFIT5Q13325 482 aaKnown RBP3.5□□□□□ -1.85
MCF2-208ENST00000519895 MFSD10Q14728 455 aa3.5□□□□□ -1.85
MCF2-208ENST00000519895 RAB30Q15771 203 aa3.5□□□□□ -1.85
MCF2-208ENST00000519895 KANK3Q6NY19 840 aa3.5□□□□□ -1.85
MCF2-208ENST00000519895 G2E3Q7L622 706 aa3.5□□□□□ -1.85
MCF2-208ENST00000519895 TDRD7Q8NHU6 1098 aaKnown RBP3.5□□□□□ -1.85
MCF2-208ENST00000519895 HOOK2Q96ED9 719 aa3.5□□□□□ -1.85
MCF2-208ENST00000519895 KAZALD1Q96I82 304 aa3.5□□□□□ -1.85
MCF2-208ENST00000519895 HS3ST6Q96QI5 342 aa3.5□□□□□ -1.85
MCF2-208ENST00000519895 FZD8Q9H461 694 aa3.5□□□□□ -1.85
MCF2-208ENST00000519895 GGA1Q9UJY5 639 aa3.5□□□□□ -1.85
MCF2-208ENST00000519895 NOB1Q9ULX3 412 aaKnown RBP3.5□□□□□ -1.85
MCF2-208ENST00000519895 SOWAHBA6NEL2 793 aa3.5□□□□□ -1.85
MCF2-208ENST00000519895 TMEM221A6NGB7 291 aa3.5□□□□□ -1.85
MCF2-208ENST00000519895 M0R296 226 aa3.5□□□□□ -1.85
MCF2-208ENST00000519895 MYL6BP14649 208 aa3.5□□□□□ -1.85
MCF2-208ENST00000519895 CDK11BP21127 795 aaKnown RBP3.5□□□□□ -1.85
MCF2-208ENST00000519895 PDE4CQ08493 712 aa3.5□□□□□ -1.85
MCF2-208ENST00000519895 ADGRE1Q14246 886 aa3.5□□□□□ -1.85
MCF2-208ENST00000519895 RETREG2Q8NC44 543 aa3.5□□□□□ -1.85
MCF2-208ENST00000519895 LPIN2Q92539 896 aa3.5□□□□□ -1.85
MCF2-208ENST00000519895 ZBTB3Q9H5J0 574 aa3.5□□□□□ -1.85
MCF2-208ENST00000519895 FAM86C1Q9NVL1 165 aa3.5□□□□□ -1.85
MCF2-208ENST00000519895 LMCD1Q9NZU5 365 aa3.5□□□□□ -1.85
MCF2-208ENST00000519895 SERPINA10Q9UK55 444 aa3.5□□□□□ -1.85
MCF2-208ENST00000519895 MINPP1Q9UNW1 487 aa3.5□□□□□ -1.85
MCF2-208ENST00000519895 SYN1P17600 705 aa3.5□□□□□ -1.85
MCF2-208ENST00000519895 HNRNPUQ00839 825 aaKnown RBP eCLIP3.5□□□□□ -1.85
MCF2-208ENST00000519895 CRHR2Q13324 411 aa3.5□□□□□ -1.85
MCF2-208ENST00000519895 PUM3Q15397 648 aaKnown RBP3.5□□□□□ -1.85
MCF2-208ENST00000519895 ZNF804AQ7Z570 1209 aa3.5□□□□□ -1.85
MCF2-208ENST00000519895 SLF2Q8IX21 1173 aa3.5□□□□□ -1.85
MCF2-208ENST00000519895 TBC1D16Q8TBP0 767 aa3.5□□□□□ -1.85
MCF2-208ENST00000519895 CDCA5Q96FF9 252 aa3.5□□□□□ -1.85
MCF2-208ENST00000519895 CLMPQ9H6B4 373 aa3.5□□□□□ -1.85
MCF2-208ENST00000519895 SYNPO2Q9UMS6 1093 aa3.5□□□□□ -1.85
MCF2-208ENST00000519895 EIF4E1BA6NMX2 242 aaKnown RBP3.49□□□□□ -1.85
MCF2-208ENST00000519895 MAP3K10Q02779 954 aa3.49□□□□□ -1.85
MCF2-208ENST00000519895 PTPN12Q05209 780 aaKnown RBP3.49□□□□□ -1.85
MCF2-208ENST00000519895 KRT24Q2M2I5 525 aa3.49□□□□□ -1.85
MCF2-208ENST00000519895 CCDC57Q2TAC2 916 aa3.49□□□□□ -1.85
MCF2-208ENST00000519895 SPTY2D1Q68D10 685 aaPredicted RBP3.49□□□□□ -1.85
MCF2-208ENST00000519895 HHIPL2Q6UWX4 724 aa3.49□□□□□ -1.85
MCF2-208ENST00000519895 KRI1Q8N9T8 703 aaKnown RBP3.49□□□□□ -1.85
MCF2-208ENST00000519895 WDR66Q8TBY9 1149 aa3.49□□□□□ -1.85
MCF2-208ENST00000519895 SUCLG2Q96I99 432 aa3.49□□□□□ -1.85
MCF2-208ENST00000519895 C9orf78Q9NZ63 289 aaPredicted RBP3.49□□□□□ -1.85
MCF2-208ENST00000519895 LAS1LQ9Y4W2 734 aaKnown RBP3.49□□□□□ -1.85
MCF2-208ENST00000519895 ZMYM6O95789 1325 aa3.49□□□□□ -1.85
MCF2-208ENST00000519895 TTC41PQ6P2S7 1318 aa3.49□□□□□ -1.85
MCF2-208ENST00000519895 MYH7P12883 1935 aa3.49□□□□□ -1.85
MCF2-208ENST00000519895 PDE8BO95263 885 aa3.49□□□□□ -1.85
MCF2-208ENST00000519895 PLCG2P16885 1265 aa3.49□□□□□ -1.85
MCF2-208ENST00000519895 ITGA6P23229 1130 aa3.49□□□□□ -1.85
MCF2-208ENST00000519895 GTF2E1P29083 439 aaPredicted RBP3.49□□□□□ -1.85
MCF2-208ENST00000519895 AVPR2P30518 371 aa3.49□□□□□ -1.85
MCF2-208ENST00000519895 RRP1P56182 461 aaKnown RBP3.49□□□□□ -1.85
MCF2-208ENST00000519895 TFF2Q03403 129 aa3.49□□□□□ -1.85
MCF2-208ENST00000519895 TRIM67Q6ZTA4 783 aa3.49□□□□□ -1.85
MCF2-208ENST00000519895 NIM1KQ8IY84 436 aa3.49□□□□□ -1.85
MCF2-208ENST00000519895 DIS3LQ8TF46 1054 aaKnown RBP3.49□□□□□ -1.85
MCF2-208ENST00000519895 DDRGK1Q96HY6 314 aa3.49□□□□□ -1.85
MCF2-208ENST00000519895 OSBPL3Q9H4L5 887 aa3.49□□□□□ -1.85
MCF2-208ENST00000519895 ZFYVE28Q9HCC9 887 aa3.49□□□□□ -1.85
MCF2-208ENST00000519895 GNL3LQ9NVN8 582 aaKnown RBP3.49□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms