RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 PI16Q6UXB8 463 aa21.19■□□□□ 0.98
VIM-204ENST00000478746 PHF6Q8IWS0 365 aaKnown RBP eCLIP21.19■□□□□ 0.98
VIM-204ENST00000478746 USP6NLQ92738 828 aa21.19■□□□□ 0.98
VIM-204ENST00000478746 NOL10Q9BSC4 688 aaKnown RBP21.19■□□□□ 0.98
VIM-204ENST00000478746 DHX36Q9H2U1 1008 aaKnown RBP21.19■□□□□ 0.98
VIM-204ENST00000478746 USP17L10C9JJH3 530 aa21.18■□□□□ 0.98
VIM-204ENST00000478746 POTEB2H3BUK9 544 aa21.18■□□□□ 0.98
VIM-204ENST00000478746 SLFN5Q08AF3 891 aa21.18■□□□□ 0.98
VIM-204ENST00000478746 CCL14Q16627 93 aa21.18■□□□□ 0.98
VIM-204ENST00000478746 FAM109BQ6ICB4 259 aaPredicted RBP21.18■□□□□ 0.98
VIM-204ENST00000478746 SH3RF3Q8TEJ3 882 aaPredicted RBP21.18■□□□□ 0.98
VIM-204ENST00000478746 NOB1Q9ULX3 412 aaKnown RBP21.18■□□□□ 0.98
VIM-204ENST00000478746 ERVK-9P63128 1117 aa21.17■□□□□ 0.98
VIM-204ENST00000478746 ERVK-24P63145 666 aa21.17■□□□□ 0.98
VIM-204ENST00000478746 MORN1Q5T089 497 aa21.17■□□□□ 0.98
VIM-204ENST00000478746 GPR142Q7Z601 462 aa21.17■□□□□ 0.98
VIM-204ENST00000478746 PLEKHH3Q7Z736 793 aa21.17■□□□□ 0.98
VIM-204ENST00000478746 FOXP4Q8IVH2 680 aaPredicted RBP21.17■□□□□ 0.98
VIM-204ENST00000478746 LBHD1Q9BQE6 289 aaPredicted RBP21.17■□□□□ 0.98
VIM-204ENST00000478746 PAGR1Q9BTK6 254 aa21.17■□□□□ 0.98
VIM-204ENST00000478746 PORCNQ9H237 461 aa21.17■□□□□ 0.98
VIM-204ENST00000478746 LRP2BPQ9P2M1 347 aa21.17■□□□□ 0.98
VIM-204ENST00000478746 DNAH12Q6ZR08 3092 aa21.16■□□□□ 0.98
VIM-204ENST00000478746 SRGAP3O43295 1099 aa21.16■□□□□ 0.98
VIM-204ENST00000478746 JAG1P78504 1218 aa21.16■□□□□ 0.98
VIM-204ENST00000478746 GTF3C2Q8WUA4 911 aaPredicted RBP21.16■□□□□ 0.98
VIM-204ENST00000478746 MEIS3Q99687 375 aa21.16■□□□□ 0.98
VIM-204ENST00000478746 TRIM34Q9BYJ4 488 aa21.16■□□□□ 0.98
VIM-204ENST00000478746 API5Q9BZZ5 524 aaKnown RBP21.16■□□□□ 0.98
VIM-204ENST00000478746 CWC22Q9HCG8 908 aaKnown RBP21.16■□□□□ 0.98
VIM-204ENST00000478746 GINM1Q9NU53 330 aa21.16■□□□□ 0.98
VIM-204ENST00000478746 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP21.16■□□□□ 0.98
VIM-204ENST00000478746 LAMA2P24043 3122 aaKnown RBP21.15■□□□□ 0.98
VIM-204ENST00000478746 BAG3O95817 575 aa21.15■□□□□ 0.98
VIM-204ENST00000478746 CRACR2BQ8N4Y2 399 aaPredicted RBP21.15■□□□□ 0.98
VIM-204ENST00000478746 EDC3Q96F86 508 aaKnown RBP21.15■□□□□ 0.98
VIM-204ENST00000478746 GUCD1Q96NT3 240 aa21.15■□□□□ 0.98
VIM-204ENST00000478746 APBA2Q99767 749 aa21.15■□□□□ 0.98
VIM-204ENST00000478746 SENP6Q9GZR1 1112 aaPredicted RBP21.15■□□□□ 0.98
VIM-204ENST00000478746 PLCG2P16885 1265 aa21.14■□□□□ 0.97
VIM-204ENST00000478746 ARID4AP29374 1257 aaPredicted RBP21.14■□□□□ 0.97
VIM-204ENST00000478746 TGFBRAP1Q8WUH2 860 aa21.14■□□□□ 0.97
VIM-204ENST00000478746 FAM161BQ96MY7 647 aa21.14■□□□□ 0.97
VIM-204ENST00000478746 AATFQ9NY61 560 aaKnown RBP eCLIP21.14■□□□□ 0.97
VIM-204ENST00000478746 GDF11O95390 407 aa21.13■□□□□ 0.97
VIM-204ENST00000478746 MAP2K5Q13163 448 aa21.13■□□□□ 0.97
VIM-204ENST00000478746 MFSD14CQ5VZR4 134 aa21.13■□□□□ 0.97
VIM-204ENST00000478746 NAA16Q6N069 864 aaPredicted RBP21.13■□□□□ 0.97
VIM-204ENST00000478746 USP17L2Q6R6M4 530 aa21.13■□□□□ 0.97
VIM-204ENST00000478746 METTL16Q86W50 562 aaKnown RBP21.13■□□□□ 0.97
VIM-204ENST00000478746 MAPKAPK5Q8IW41 473 aa21.13■□□□□ 0.97
VIM-204ENST00000478746 EMILIN3Q9NT22 766 aa21.13■□□□□ 0.97
VIM-204ENST00000478746 GLRX3O76003 335 aaKnown RBP21.12■□□□□ 0.97
VIM-204ENST00000478746 GNAI3P08754 354 aa21.12■□□□□ 0.97
VIM-204ENST00000478746 UQCRFS1P1P0C7P4 283 aa21.12■□□□□ 0.97
VIM-204ENST00000478746 MCAMP43121 646 aa21.12■□□□□ 0.97
VIM-204ENST00000478746 SHROOM1Q2M3G4 852 aaPredicted RBP21.12■□□□□ 0.97
VIM-204ENST00000478746 POTEEQ6S8J3 1075 aa21.12■□□□□ 0.97
VIM-204ENST00000478746 DNAJC18Q9H819 358 aa21.12■□□□□ 0.97
VIM-204ENST00000478746 PALD1Q9ULE6 856 aa21.12■□□□□ 0.97
VIM-204ENST00000478746 PPP4CP60510 307 aa21.11■□□□□ 0.97
VIM-204ENST00000478746 CCNA1P78396 465 aa21.11■□□□□ 0.97
VIM-204ENST00000478746 CDCA7LQ96GN5 454 aa21.11■□□□□ 0.97
VIM-204ENST00000478746 PRKAG2Q9UGJ0 569 aa21.11■□□□□ 0.97
VIM-204ENST00000478746 ZBTB21Q9ULJ3 1066 aa21.11■□□□□ 0.97
VIM-204ENST00000478746 RABGAP1Q9Y3P9 1069 aa21.11■□□□□ 0.97
VIM-204ENST00000478746 CNGA1P29973 690 aa21.1■□□□□ 0.97
VIM-204ENST00000478746 ATN1P54259 1190 aaPredicted RBP21.1■□□□□ 0.97
VIM-204ENST00000478746 MTX1Q13505 466 aa21.1■□□□□ 0.97
VIM-204ENST00000478746 ZNF697Q5TEC3 545 aa21.1■□□□□ 0.97
VIM-204ENST00000478746 NDUFB9Q9Y6M9 179 aa21.1■□□□□ 0.97
VIM-204ENST00000478746 FLT1P17948 1338 aa21.09■□□□□ 0.97
VIM-204ENST00000478746 SIPA1L1O43166 1804 aa21.09■□□□□ 0.97
VIM-204ENST00000478746 USP17L15C9J2P7 530 aa21.09■□□□□ 0.97
VIM-204ENST00000478746 USP17L13C9JLJ4 530 aa21.09■□□□□ 0.97
VIM-204ENST00000478746 USP17L11C9JVI0 530 aa21.09■□□□□ 0.97
VIM-204ENST00000478746 USP17L18D6R9N7 530 aa21.09■□□□□ 0.97
VIM-204ENST00000478746 USP17L22D6RA61 530 aa21.09■□□□□ 0.97
VIM-204ENST00000478746 USP17L17D6RBQ6 530 aa21.09■□□□□ 0.97
VIM-204ENST00000478746 USP17L19D6RCP7 530 aa21.09■□□□□ 0.97
VIM-204ENST00000478746 USP17L20D6RJB6 530 aa21.09■□□□□ 0.97
VIM-204ENST00000478746 ATP2B2Q01814 1243 aa21.09■□□□□ 0.97
VIM-204ENST00000478746 USP17L24Q0WX57 530 aa21.09■□□□□ 0.97
VIM-204ENST00000478746 G3BP1Q13283 466 aaKnown RBP eCLIP21.09■□□□□ 0.97
VIM-204ENST00000478746 WDR78Q5VTH9 848 aa21.09■□□□□ 0.97
VIM-204ENST00000478746 ATF7IPQ6VMQ6 1270 aa21.09■□□□□ 0.97
VIM-204ENST00000478746 SNRKQ9NRH2 765 aa21.09■□□□□ 0.97
VIM-204ENST00000478746 FLRT1Q9NZU1 646 aa21.09■□□□□ 0.97
VIM-204ENST00000478746 DDX20Q9UHI6 824 aaKnown RBP21.09■□□□□ 0.97
VIM-204ENST00000478746 SLC15A5A6NIM6 579 aa21.08■□□□□ 0.97
VIM-204ENST00000478746 MSCO60682 206 aa21.08■□□□□ 0.97
VIM-204ENST00000478746 HLA-DOAP06340 250 aa21.08■□□□□ 0.97
VIM-204ENST00000478746 LPAR1Q92633 364 aa21.08■□□□□ 0.97
VIM-204ENST00000478746 SAP30BPQ9UHR5 308 aaKnown RBP21.08■□□□□ 0.97
VIM-204ENST00000478746 CNMDO75829 334 aa21.07■□□□□ 0.96
VIM-204ENST00000478746 GH2P01242 217 aa21.07■□□□□ 0.96
VIM-204ENST00000478746 CT47B1P0C2W7 299 aaPredicted RBP21.07■□□□□ 0.96
VIM-204ENST00000478746 PTPREP23469 700 aa21.07■□□□□ 0.96
VIM-204ENST00000478746 ZYXQ15942 572 aaKnown RBP21.07■□□□□ 0.96
VIM-204ENST00000478746 IVNS1ABPQ9Y6Y0 642 aa21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 95.6 ms