RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 XPO4Q9C0E2 1151 aaKnown RBP22.29■■□□□ 1.16
COL9A3-201ENST00000343916 VPS54Q9P1Q0 977 aa22.29■■□□□ 1.16
COL9A3-201ENST00000343916 TUBE1Q9UJT0 475 aa22.29■■□□□ 1.16
COL9A3-201ENST00000343916 USP21Q9UK80 565 aa22.29■■□□□ 1.16
COL9A3-201ENST00000343916 PLEKHA8P1O95397 391 aa22.28■■□□□ 1.16
COL9A3-201ENST00000343916 LMOD1P29536 600 aaPredicted RBP22.28■■□□□ 1.16
COL9A3-201ENST00000343916 SLC4A8Q2Y0W8 1093 aa22.28■■□□□ 1.16
COL9A3-201ENST00000343916 FOXP4Q8IVH2 680 aaPredicted RBP22.28■■□□□ 1.16
COL9A3-201ENST00000343916 CABP5Q9NP86 173 aa22.28■■□□□ 1.16
COL9A3-201ENST00000343916 IFNKQ9P0W0 207 aa22.28■■□□□ 1.16
COL9A3-201ENST00000343916 DUOX1Q9NRD9 1551 aa22.28■■□□□ 1.16
COL9A3-201ENST00000343916 FAM237AA0A1B0GTK4 181 aa22.28■■□□□ 1.16
COL9A3-201ENST00000343916 NMT2O60551 498 aa22.28■■□□□ 1.16
COL9A3-201ENST00000343916 CNNM3Q8NE01 707 aa22.28■■□□□ 1.16
COL9A3-201ENST00000343916 CCNL1Q9UK58 526 aaPredicted RBP22.28■■□□□ 1.16
COL9A3-201ENST00000343916 FAM205CA6NFA0 338 aa22.27■■□□□ 1.16
COL9A3-201ENST00000343916 RCAN1P53805 252 aa22.27■■□□□ 1.16
COL9A3-201ENST00000343916 KRBA2Q6ZNG9 492 aa22.27■■□□□ 1.16
COL9A3-201ENST00000343916 ZNF831Q5JPB2 1677 aa22.27■■□□□ 1.15
COL9A3-201ENST00000343916 SKILP12757 684 aa22.26■■□□□ 1.15
COL9A3-201ENST00000343916 PKN1Q16512 942 aa22.26■■□□□ 1.15
COL9A3-201ENST00000343916 RILPL1Q5EBL4 403 aa22.26■■□□□ 1.15
COL9A3-201ENST00000343916 TPTE2Q6XPS3 522 aa22.26■■□□□ 1.15
COL9A3-201ENST00000343916 ARHGEF1Q92888 912 aaKnown RBP22.26■■□□□ 1.15
COL9A3-201ENST00000343916 NPHP1O15259 732 aa22.26■■□□□ 1.15
COL9A3-201ENST00000343916 IQCA1Q86XH1 822 aa22.26■■□□□ 1.15
COL9A3-201ENST00000343916 RNF26Q9BY78 433 aaPredicted RBP22.26■■□□□ 1.15
COL9A3-201ENST00000343916 DCP1AQ9NPI6 582 aaPredicted RBP22.26■■□□□ 1.15
COL9A3-201ENST00000343916 FBXO2Q9UK22 296 aaPredicted RBP22.26■■□□□ 1.15
COL9A3-201ENST00000343916 RTCBQ9Y3I0 505 aaKnown RBP22.26■■□□□ 1.15
COL9A3-201ENST00000343916 USP27XA6NNY8 438 aa22.25■■□□□ 1.15
COL9A3-201ENST00000343916 RIOK3O14730 519 aaKnown RBP22.25■■□□□ 1.15
COL9A3-201ENST00000343916 ATP1A3P13637 1013 aa22.25■■□□□ 1.15
COL9A3-201ENST00000343916 AKAP17AQ02040 695 aaKnown RBP22.25■■□□□ 1.15
COL9A3-201ENST00000343916 FAM47AQ5JRC9 791 aa22.25■■□□□ 1.15
COL9A3-201ENST00000343916 RC3H1Q5TC82 1133 aaKnown RBP22.25■■□□□ 1.15
COL9A3-201ENST00000343916 CATIPQ7Z7H3 387 aa22.25■■□□□ 1.15
COL9A3-201ENST00000343916 HSD3B7Q9H2F3 369 aa22.25■■□□□ 1.15
COL9A3-201ENST00000343916 PCDHA5Q9Y5H7 936 aa22.25■■□□□ 1.15
COL9A3-201ENST00000343916 V9GY48 417 aaPredicted RBP22.25■■□□□ 1.15
COL9A3-201ENST00000343916 MYH13Q9UKX3 1938 aa22.25■■□□□ 1.15
COL9A3-201ENST00000343916 MYH6P13533 1939 aa22.25■■□□□ 1.15
COL9A3-201ENST00000343916 CYP2D6P10635 497 aa22.25■■□□□ 1.15
COL9A3-201ENST00000343916 TM4SF1P30408 202 aa22.25■■□□□ 1.15
COL9A3-201ENST00000343916 FUT2Q10981 343 aa22.25■■□□□ 1.15
COL9A3-201ENST00000343916 EARS2Q5JPH6 523 aaKnown RBP22.25■■□□□ 1.15
COL9A3-201ENST00000343916 BAZ2BQ9UIF8 2168 aaKnown RBP22.25■■□□□ 1.15
COL9A3-201ENST00000343916 SEMA3EO15041 775 aa22.24■■□□□ 1.15
COL9A3-201ENST00000343916 PTPREP23469 700 aa22.24■■□□□ 1.15
COL9A3-201ENST00000343916 CCZ1BP86790 482 aa22.24■■□□□ 1.15
COL9A3-201ENST00000343916 CCZ1P86791 482 aaPredicted RBP22.24■■□□□ 1.15
COL9A3-201ENST00000343916 TROAPQ12815 778 aa22.24■■□□□ 1.15
COL9A3-201ENST00000343916 GTF2F1P35269 517 aaKnown RBP eCLIP22.24■■□□□ 1.157e-7■■■■□ 19.9
COL9A3-201ENST00000343916 TPD52L1Q16890 204 aaPredicted RBP22.24■■□□□ 1.15
COL9A3-201ENST00000343916 FGRP09769 529 aa22.23■■□□□ 1.15
COL9A3-201ENST00000343916 ZNF710Q8N1W2 664 aa22.23■■□□□ 1.15
COL9A3-201ENST00000343916 PDILTQ8N807 584 aa22.23■■□□□ 1.15
COL9A3-201ENST00000343916 ANKRD2Q9GZV1 360 aa22.23■■□□□ 1.15
COL9A3-201ENST00000343916 SMTNL1A8MU46 457 aa22.23■■□□□ 1.15
COL9A3-201ENST00000343916 POLR2DO15514 142 aaKnown RBP22.23■■□□□ 1.15
COL9A3-201ENST00000343916 TNNT1P13805 278 aa22.23■■□□□ 1.15
COL9A3-201ENST00000343916 USP49Q70CQ1 688 aa22.23■■□□□ 1.15
COL9A3-201ENST00000343916 TMC6Q7Z403 805 aa22.23■■□□□ 1.15
COL9A3-201ENST00000343916 BTAF1O14981 1849 aa22.23■■□□□ 1.15
COL9A3-201ENST00000343916 BMP6P22004 513 aa22.22■■□□□ 1.15
COL9A3-201ENST00000343916 CRNKL1Q9BZJ0 848 aaKnown RBP22.22■■□□□ 1.15
COL9A3-201ENST00000343916 NEMFO60524 1076 aa22.22■■□□□ 1.15
COL9A3-201ENST00000343916 TPM4P67936 248 aa22.22■■□□□ 1.15
COL9A3-201ENST00000343916 DDX52Q9Y2R4 599 aaKnown RBP eCLIP22.22■■□□□ 1.15
COL9A3-201ENST00000343916 IKBKBO14920 756 aa22.21■■□□□ 1.15
COL9A3-201ENST00000343916 MDM2Q00987 491 aaPredicted RBP22.21■■□□□ 1.15
COL9A3-201ENST00000343916 PPP2R5BQ15173 497 aa22.21■■□□□ 1.15
COL9A3-201ENST00000343916 NOM1Q5C9Z4 860 aaKnown RBP22.21■■□□□ 1.15
COL9A3-201ENST00000343916 GRAMD1CQ8IYS0 662 aa22.21■■□□□ 1.15
COL9A3-201ENST00000343916 WNT7AO00755 349 aa22.21■■□□□ 1.15
COL9A3-201ENST00000343916 RGL2O15211 777 aa22.21■■□□□ 1.15
COL9A3-201ENST00000343916 PRR29P0C7W0 189 aa22.21■■□□□ 1.15
COL9A3-201ENST00000343916 FANCCQ00597 558 aa22.21■■□□□ 1.15
COL9A3-201ENST00000343916 PHF20Q9BVI0 1012 aa22.21■■□□□ 1.15
COL9A3-201ENST00000343916 PRDM10Q9NQV6 1147 aa22.21■■□□□ 1.15
COL9A3-201ENST00000343916 TRMT1Q9NXH9 659 aaKnown RBP22.21■■□□□ 1.15
COL9A3-201ENST00000343916 SERTAD1Q9UHV2 236 aa22.21■■□□□ 1.15
COL9A3-201ENST00000343916 EP400Q96L91 3159 aa22.21■■□□□ 1.15
COL9A3-201ENST00000343916 PRPF3O43395 683 aaKnown RBP22.2■■□□□ 1.14
COL9A3-201ENST00000343916 XBP1P17861 261 aa22.2■■□□□ 1.14
COL9A3-201ENST00000343916 PDE4BQ07343 736 aa22.2■■□□□ 1.14
COL9A3-201ENST00000343916 OSBPL5Q9H0X9 879 aaPredicted RBP22.2■■□□□ 1.14
COL9A3-201ENST00000343916 CSRNP2Q9H175 543 aa22.2■■□□□ 1.14
COL9A3-201ENST00000343916 ANKIB1Q9P2G1 1089 aa22.2■■□□□ 1.14
COL9A3-201ENST00000343916 MYL5Q02045 173 aa22.2■■□□□ 1.14
COL9A3-201ENST00000343916 SRPRBQ9Y5M8 271 aaKnown RBP22.2■■□□□ 1.14
COL9A3-201ENST00000343916 COL24A1Q17RW2 1714 aa22.19■■□□□ 1.14
COL9A3-201ENST00000343916 KRT2P35908 639 aa22.19■■□□□ 1.14
COL9A3-201ENST00000343916 POSTNQ15063 836 aa22.19■■□□□ 1.14
COL9A3-201ENST00000343916 PTPN21Q16825 1174 aa22.19■■□□□ 1.14
COL9A3-201ENST00000343916 HSP90AA4PQ58FG1 418 aa22.19■■□□□ 1.14
COL9A3-201ENST00000343916 MEX3CQ5U5Q3 659 aaKnown RBP22.19■■□□□ 1.14
COL9A3-201ENST00000343916 ARMCX5Q6P1M9 558 aa22.19■■□□□ 1.14
COL9A3-201ENST00000343916 DZIP1Q86YF9 867 aaKnown RBP22.19■■□□□ 1.14
COL9A3-201ENST00000343916 DPF2Q92785 391 aa22.19■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms