RNA–Protein interactions for RNA: ENSMUST00000040182.12

Ccdc88a-201, Transcript of Girdin, mousemouse

APPRIS P1 TSL 5 BASIC

Gene Ccdc88a, Length 9,376 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88a-201ENSMUST00000040182 Usp24B1AY13 2617 aaKnown RBP12.31□□□□□ -0.44
Ccdc88a-201ENSMUST00000040182 Sprr2jO70561 109 aa12.31□□□□□ -0.44
Ccdc88a-201ENSMUST00000040182 PscaP57096 123 aa12.3□□□□□ -0.44
Ccdc88a-201ENSMUST00000040182 UqcrqQ9CQ69 82 aa12.3□□□□□ -0.44
Ccdc88a-201ENSMUST00000040182 Pip4p1Q3TWL2 284 aa12.29□□□□□ -0.44
Ccdc88a-201ENSMUST00000040182 Fam19a5Q91WE9 132 aa12.29□□□□□ -0.44
Ccdc88a-201ENSMUST00000040182 ColqO35348 457 aa12.29□□□□□ -0.44
Ccdc88a-201ENSMUST00000040182 Esm1Q9QYY7 184 aa12.29□□□□□ -0.44
Ccdc88a-201ENSMUST00000040182 Ube2d1P61080 147 aaKnown RBP12.28□□□□□ -0.44
Ccdc88a-201ENSMUST00000040182 4930556J24RikQ9D4U7 146 aa12.28□□□□□ -0.44
Ccdc88a-201ENSMUST00000040182 Lmo4P61969 165 aa12.28□□□□□ -0.44
Ccdc88a-201ENSMUST00000040182 SycnQ8VCK7 134 aa12.28□□□□□ -0.44
Ccdc88a-201ENSMUST00000040182 TshbP12656 138 aa12.27□□□□□ -0.44
Ccdc88a-201ENSMUST00000040182 FasnP19096 2504 aaKnown RBP12.27□□□□□ -0.44
Ccdc88a-201ENSMUST00000040182 Gm1968Q3T9I3 115 aa12.27□□□□□ -0.45
Ccdc88a-201ENSMUST00000040182 Gm10226O88253 85 aa12.27□□□□□ -0.45
Ccdc88a-201ENSMUST00000040182 Igkv8-28A0A0G2JE47 121 aa12.27□□□□□ -0.45
Ccdc88a-201ENSMUST00000040182 Ly6c2P0CW03 131 aa12.26□□□□□ -0.45
Ccdc88a-201ENSMUST00000040182 Dmbt1Q60997 2085 aa12.26□□□□□ -0.45
Ccdc88a-201ENSMUST00000040182 Ankrd11E9Q4F7 2643 aa12.25□□□□□ -0.45
Ccdc88a-201ENSMUST00000040182 Cd27P41272 250 aa12.25□□□□□ -0.45
Ccdc88a-201ENSMUST00000040182 E130116L18RikQ8BMV6 101 aa12.25□□□□□ -0.45
Ccdc88a-201ENSMUST00000040182 Smr3aQ61900 147 aa12.25□□□□□ -0.45
Ccdc88a-201ENSMUST00000040182 SetxA2AKX3 2646 aa12.24□□□□□ -0.45
Ccdc88a-201ENSMUST00000040182 Ube2d3P61079 147 aa12.24□□□□□ -0.45
Ccdc88a-201ENSMUST00000040182 Gm10509O88255 85 aa12.23□□□□□ -0.45
Ccdc88a-201ENSMUST00000040182 Polr2kQ63871 58 aa12.22□□□□□ -0.45
Ccdc88a-201ENSMUST00000040182 Lypd6Q8BPP5 171 aa12.21□□□□□ -0.45
Ccdc88a-201ENSMUST00000040182 Shisa2Q8QZV2 295 aa12.21□□□□□ -0.45
Ccdc88a-201ENSMUST00000040182 AvpP35455 168 aa12.21□□□□□ -0.45
Ccdc88a-201ENSMUST00000040182 2010109I03RikQ9CQ11 111 aa12.21□□□□□ -0.46
Ccdc88a-201ENSMUST00000040182 2310009B15RikA0A0A6YWI4 143 aa12.21□□□□□ -0.46
Ccdc88a-201ENSMUST00000040182 Fhl2O70433 279 aa12.2□□□□□ -0.46
Ccdc88a-201ENSMUST00000040182 1700056E22RikF7CNM6 234 aa12.2□□□□□ -0.46
Ccdc88a-201ENSMUST00000040182 Dkk4Q8VEJ3 221 aa12.2□□□□□ -0.46
Ccdc88a-201ENSMUST00000040182 Igkv3-7A0A0G2JE31 119 aa12.19□□□□□ -0.46
Ccdc88a-201ENSMUST00000040182 Nupr2Q497P3 102 aa12.19□□□□□ -0.46
Ccdc88a-201ENSMUST00000040182 Gm9887F6RFI0 207 aa12.19□□□□□ -0.46
Ccdc88a-201ENSMUST00000040182 Smrp1Q2MH31 260 aa12.19□□□□□ -0.46
Ccdc88a-201ENSMUST00000040182 P06329 120 aa12.18□□□□□ -0.46
Ccdc88a-201ENSMUST00000040182 1520401A03RikA0A0J9YVH6 598 aa12.17□□□□□ -0.46
Ccdc88a-201ENSMUST00000040182 Abca12E9Q876 2595 aa12.17□□□□□ -0.46
Ccdc88a-201ENSMUST00000040182 BtcQ05928 177 aa12.16□□□□□ -0.46
Ccdc88a-201ENSMUST00000040182 1700011M02RikB1AX35 88 aa12.16□□□□□ -0.46
Ccdc88a-201ENSMUST00000040182 Gm10490F6VBM2 120 aa12.16□□□□□ -0.46
Ccdc88a-201ENSMUST00000040182 LhbO09108 141 aa12.15□□□□□ -0.46
Ccdc88a-201ENSMUST00000040182 Cdc42se2Q8BGH7 84 aa12.14□□□□□ -0.47
Ccdc88a-201ENSMUST00000040182 Krtap27-1E9PX37 202 aa12.14□□□□□ -0.47
Ccdc88a-201ENSMUST00000040182 Defb42Q8BVB5 75 aa12.14□□□□□ -0.47
Ccdc88a-201ENSMUST00000040182 4930524J08RikQ9CUJ5 163 aa12.14□□□□□ -0.47
Ccdc88a-201ENSMUST00000040182 C130032M10RikQ8C888 123 aa12.13□□□□□ -0.47
Ccdc88a-201ENSMUST00000040182 Bahcc1Q3UHR0 2643 aa12.13□□□□□ -0.47
Ccdc88a-201ENSMUST00000040182 Pla2g1bQ9Z0Y2 146 aa12.12□□□□□ -0.47
Ccdc88a-201ENSMUST00000040182 Defb40Q70KL2 73 aa12.12□□□□□ -0.47
Ccdc88a-201ENSMUST00000040182 Ighv1-72P01751 139 aa12.11□□□□□ -0.47
Ccdc88a-201ENSMUST00000040182 B430305J03RikQ8BQQ8 176 aa12.11□□□□□ -0.47
Ccdc88a-201ENSMUST00000040182 Gm9925F6T2U3 160 aa12.11□□□□□ -0.47
Ccdc88a-201ENSMUST00000040182 Gm10549Q3URY4 149 aa12.11□□□□□ -0.47
Ccdc88a-201ENSMUST00000040182 Ighv8-11A0A075B5X4 119 aa12.1□□□□□ -0.47
Ccdc88a-201ENSMUST00000040182 PrlhG3UWC3 86 aa12.1□□□□□ -0.47
Ccdc88a-201ENSMUST00000040182 Gm16223Q8CBM3 117 aa12.1□□□□□ -0.47
Ccdc88a-201ENSMUST00000040182 Ifitm6A0A1B0GS75 124 aa12.09□□□□□ -0.47
Ccdc88a-201ENSMUST00000040182 Gm8439G3UWA7 96 aa12.09□□□□□ -0.47
Ccdc88a-201ENSMUST00000040182 Gm9922Q8C3P1 144 aa12.09□□□□□ -0.47
Ccdc88a-201ENSMUST00000040182 P01755 137 aa12.08□□□□□ -0.48
Ccdc88a-201ENSMUST00000040182 4930535I16RikQ9CUI2 172 aa12.08□□□□□ -0.48
Ccdc88a-201ENSMUST00000040182 CrygfQ9CXV3 174 aa12.08□□□□□ -0.48
Ccdc88a-201ENSMUST00000040182 Wfdc12Q9JHY3 85 aa12.08□□□□□ -0.48
Ccdc88a-201ENSMUST00000040182 TeppQ6IMH0 216 aa12.07□□□□□ -0.48
Ccdc88a-201ENSMUST00000040182 Igkv8-19A0A0G2JFN8 121 aa12.06□□□□□ -0.48
Ccdc88a-201ENSMUST00000040182 Ighv2-9A0A075B5Q5 116 aa12.06□□□□□ -0.48
Ccdc88a-201ENSMUST00000040182 Wfdc6bF6ULY1 148 aa12.06□□□□□ -0.48
Ccdc88a-201ENSMUST00000040182 Ovol3D3YYM0 189 aa12.06□□□□□ -0.48
Ccdc88a-201ENSMUST00000040182 Wfdc13Q5DQQ6 81 aa12.05□□□□□ -0.48
Ccdc88a-201ENSMUST00000040182 Gm9573F7C950 1606 aa12.05□□□□□ -0.48
Ccdc88a-201ENSMUST00000040182 Gm10845Q3UNY9 185 aa12.05□□□□□ -0.48
Ccdc88a-201ENSMUST00000040182 Gpha2Q925Q5 128 aa12.04□□□□□ -0.48
Ccdc88a-201ENSMUST00000040182 SrarpQ3ULG3 163 aa12.04□□□□□ -0.48
Ccdc88a-201ENSMUST00000040182 Unc79Q0KK59 2596 aa12.03□□□□□ -0.48
Ccdc88a-201ENSMUST00000040182 ScxQ64124 207 aa12.03□□□□□ -0.48
Ccdc88a-201ENSMUST00000040182 Gm5142Q8C5X9 133 aa12.02□□□□□ -0.49
Ccdc88a-201ENSMUST00000040182 Ntn5Q3UQ22 452 aa12.02□□□□□ -0.49
Ccdc88a-201ENSMUST00000040182 Cep192E9Q4Y4 2514 aaKnown RBP12.02□□□□□ -0.49
Ccdc88a-201ENSMUST00000040182 Gm17509Q9CZ61 145 aa12.01□□□□□ -0.49
Ccdc88a-201ENSMUST00000040182 Ighv8-13A0A075B5Y0 101 aa12.01□□□□□ -0.49
Ccdc88a-201ENSMUST00000040182 Gm10267M0QWD8 85 aa12.01□□□□□ -0.49
Ccdc88a-201ENSMUST00000040182 SbsponQ3UPR9 264 aa12□□□□□ -0.49
Ccdc88a-201ENSMUST00000040182 Chchd10Q7TNL9 138 aa12□□□□□ -0.49
Ccdc88a-201ENSMUST00000040182 Gm21748Q3UE70 102 aa12□□□□□ -0.49
Ccdc88a-201ENSMUST00000040182 Gm17606F6ZL36 78 aa11.98□□□□□ -0.49
Ccdc88a-201ENSMUST00000040182 Trbv13-2A0A140T8N6 113 aa11.98□□□□□ -0.49
Ccdc88a-201ENSMUST00000040182 CrygeQ03740 174 aa11.97□□□□□ -0.49
Ccdc88a-201ENSMUST00000040182 Coa6Q8BGD8 79 aa11.97□□□□□ -0.49
Ccdc88a-201ENSMUST00000040182 Pla2g2cP48076 150 aa11.96□□□□□ -0.5
Ccdc88a-201ENSMUST00000040182 Ighv1-56A0A0A6YXG2 117 aa11.96□□□□□ -0.5
Ccdc88a-201ENSMUST00000040182 BC025920Q3US60 128 aa11.95□□□□□ -0.5
Ccdc88a-201ENSMUST00000040182 4930432M17RikQ3V0W9 174 aa11.95□□□□□ -0.5
Ccdc88a-201ENSMUST00000040182 CicQ924A2 2510 aa11.95□□□□□ -0.5
Ccdc88a-201ENSMUST00000040182 Ighv2-5A0A0A6YY69 116 aa11.94□□□□□ -0.5
Ccdc88a-201ENSMUST00000040182 A0A286YCN5 57 aa11.93□□□□□ -0.5
Retrieved 100 of 22,080 RNA–protein pairs in 55.9 ms