RNA–Protein interactions for RNA: ENSMUST00000002708.4

Shh-201, Transcript of Sonic hedgehog protein, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Shh, Length 2,847 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Shh-201ENSMUST00000002708 Trav7d-3Q5R1I1 112 aa11.98□□□□□ -0.49
Shh-201ENSMUST00000002708 TtrP07309 147 aa11.98□□□□□ -0.49
Shh-201ENSMUST00000002708 Ankrd17Q99NH0 2603 aaKnown RBP11.98□□□□□ -0.49
Shh-201ENSMUST00000002708 A530064D06RikQ8BNV8 229 aa11.97□□□□□ -0.49
Shh-201ENSMUST00000002708 Pdzd2E9Q1M1 2796 aa11.97□□□□□ -0.49
Shh-201ENSMUST00000002708 Cfap126Q6P8X9 189 aa11.97□□□□□ -0.49
Shh-201ENSMUST00000002708 Ighv1-5A0A0A6YWG2 117 aa11.96□□□□□ -0.49
Shh-201ENSMUST00000002708 Gm4861Q8C5A4 106 aa11.96□□□□□ -0.49
Shh-201ENSMUST00000002708 Dmbt1Q60997 2085 aa11.96□□□□□ -0.49
Shh-201ENSMUST00000002708 B230217C12RikE9Q3Z1 139 aa11.96□□□□□ -0.49
Shh-201ENSMUST00000002708 BsnO88737 3942 aa11.96□□□□□ -0.5
Shh-201ENSMUST00000002708 Gm5089A1L3C8 106 aa11.95□□□□□ -0.5
Shh-201ENSMUST00000002708 Atp5g3P56384 141 aa11.95□□□□□ -0.5
Shh-201ENSMUST00000002708 Ucn2Q99ML8 113 aa11.95□□□□□ -0.5
Shh-201ENSMUST00000002708 Phlda3Q9WV95 125 aa11.95□□□□□ -0.5
Shh-201ENSMUST00000002708 Helz2E9QAM5 2947 aaKnown RBP11.94□□□□□ -0.5
Shh-201ENSMUST00000002708 Xirp2Q4U4S6 3784 aa11.94□□□□□ -0.5
Shh-201ENSMUST00000002708 Col7a1Q63870 2944 aa11.94□□□□□ -0.5
Shh-201ENSMUST00000002708 Gm11020F6ZGD5 61 aa11.94□□□□□ -0.5
Shh-201ENSMUST00000002708 Ly86O88188 162 aa11.94□□□□□ -0.5
Shh-201ENSMUST00000002708 Srp14P16254 110 aaKnown RBP11.94□□□□□ -0.5
Shh-201ENSMUST00000002708 Psmb8P28063 276 aa11.94□□□□□ -0.5
Shh-201ENSMUST00000002708 Avpi1Q9D7H4 142 aa11.94□□□□□ -0.5
Shh-201ENSMUST00000002708 Gm29423A0A087WRM1 55 aa11.93□□□□□ -0.5
Shh-201ENSMUST00000002708 Rbmy1bQ60990 380 aa11.93□□□□□ -0.5
Shh-201ENSMUST00000002708 Lgals4Q8K419 326 aa11.93□□□□□ -0.5
Shh-201ENSMUST00000002708 Gm10251J3QPM5 127 aa11.93□□□□□ -0.5
Shh-201ENSMUST00000002708 Klk1b4P00757 256 aa11.93□□□□□ -0.5
Shh-201ENSMUST00000002708 Rpl32-psP17932 135 aa11.93□□□□□ -0.5
Shh-201ENSMUST00000002708 Prr13Q9CQJ5 137 aa11.93□□□□□ -0.5
Shh-201ENSMUST00000002708 Fgf23Q9EPC2 251 aa11.93□□□□□ -0.5
Shh-201ENSMUST00000002708 Gm9887F6RFI0 207 aa11.92□□□□□ -0.5
Shh-201ENSMUST00000002708 Wnk1P83741 2377 aa11.92□□□□□ -0.5
Shh-201ENSMUST00000002708 Igkv4-91A0A075B5L2 119 aa11.92□□□□□ -0.5
Shh-201ENSMUST00000002708 Scgb1b24B1B0N6 92 aa11.92□□□□□ -0.5
Shh-201ENSMUST00000002708 P06329 120 aa11.92□□□□□ -0.5
Shh-201ENSMUST00000002708 Gata1P17679 413 aa11.92□□□□□ -0.5
Shh-201ENSMUST00000002708 4930415O20RikQ8CDT5 131 aa11.92□□□□□ -0.5
Shh-201ENSMUST00000002708 ColqO35348 457 aa11.92□□□□□ -0.5
Shh-201ENSMUST00000002708 Hivep2Q3UHF7 2430 aa11.91□□□□□ -0.5
Shh-201ENSMUST00000002708 Ly6gP35461 111 aa11.91□□□□□ -0.5
Shh-201ENSMUST00000002708 Eif4ebp3Q80VV3 101 aa11.91□□□□□ -0.5
Shh-201ENSMUST00000002708 4930470P17RikQ9D542 155 aa11.91□□□□□ -0.5
Shh-201ENSMUST00000002708 Trav7-6A0A075B640 112 aa11.91□□□□□ -0.5
Shh-201ENSMUST00000002708 Krtap27-1E9PX37 202 aa11.91□□□□□ -0.5
Shh-201ENSMUST00000002708 Spink10Q8CAC8 162 aa11.91□□□□□ -0.5
Shh-201ENSMUST00000002708 3110070M22RikQ9DAQ7 118 aa11.9□□□□□ -0.5
Shh-201ENSMUST00000002708 FlnaQ8BTM8 2647 aaKnown RBP11.9□□□□□ -0.5
Shh-201ENSMUST00000002708 Rif1Q6PR54 2419 aaKnown RBP11.89□□□□□ -0.51
Shh-201ENSMUST00000002708 Trbv30A0A0B4J1P1 111 aa11.89□□□□□ -0.51
Shh-201ENSMUST00000002708 Ighv1-72P01751 139 aa11.89□□□□□ -0.51
Shh-201ENSMUST00000002708 Trav9n-2A0A0G2JDP3 113 aa11.89□□□□□ -0.51
Shh-201ENSMUST00000002708 Gm8439G3UWA7 96 aa11.88□□□□□ -0.51
Shh-201ENSMUST00000002708 1700020N15RikL7MTX3 112 aa11.88□□□□□ -0.51
Shh-201ENSMUST00000002708 Igkv4-78A0A0A6YYE5 119 aa11.87□□□□□ -0.51
Shh-201ENSMUST00000002708 Igkv4-68A0A0B4J1I7 117 aa11.87□□□□□ -0.51
Shh-201ENSMUST00000002708 Smrp1Q2MH31 260 aa11.87□□□□□ -0.51
Shh-201ENSMUST00000002708 Nhlrc1Q8BR37 401 aa11.87□□□□□ -0.51
Shh-201ENSMUST00000002708 Gm3443F7CCV5 94 aa11.87□□□□□ -0.51
Shh-201ENSMUST00000002708 Rnf183Q8QZS5 190 aa11.87□□□□□ -0.51
Shh-201ENSMUST00000002708 P01786 117 aa11.86□□□□□ -0.51
Shh-201ENSMUST00000002708 Gm9747Q810H1 104 aa11.86□□□□□ -0.51
Shh-201ENSMUST00000002708 Mapk1ip1lQ8BH93 242 aa11.86□□□□□ -0.51
Shh-201ENSMUST00000002708 Gm10509O88255 85 aa11.86□□□□□ -0.51
Shh-201ENSMUST00000002708 GalmQ8K157 342 aa11.86□□□□□ -0.51
Shh-201ENSMUST00000002708 Smim10l1A0A087WNQ7 89 aa11.85□□□□□ -0.51
Shh-201ENSMUST00000002708 Ighv2-6-8A0A0A6YWY9 116 aa11.85□□□□□ -0.51
Shh-201ENSMUST00000002708 Rnase1P00683 149 aa11.85□□□□□ -0.51
Shh-201ENSMUST00000002708 Ank2Q8C8R3 3898 aa11.85□□□□□ -0.51
Shh-201ENSMUST00000002708 Glrp1E9Q9S8 174 aa11.84□□□□□ -0.51
Shh-201ENSMUST00000002708 Gm10542F6XDR3 90 aa11.84□□□□□ -0.51
Shh-201ENSMUST00000002708 Prp2P05143 317 aa11.84□□□□□ -0.51
Shh-201ENSMUST00000002708 Lyrm7Q9DA03 104 aa11.84□□□□□ -0.51
Shh-201ENSMUST00000002708 Trdv5A0A075B661 115 aa11.84□□□□□ -0.51
Shh-201ENSMUST00000002708 Gm815Q3UWS2 115 aa11.84□□□□□ -0.51
Shh-201ENSMUST00000002708 Ifitm1Q9D103 106 aa11.84□□□□□ -0.51
Shh-201ENSMUST00000002708 Defb2P82020 71 aa11.83□□□□□ -0.52
Shh-201ENSMUST00000002708 Gm10767Q3TQP0 103 aa11.83□□□□□ -0.52
Shh-201ENSMUST00000002708 Fam110dQ80X91 271 aa11.83□□□□□ -0.52
Shh-201ENSMUST00000002708 RetnQ99P87 114 aa11.83□□□□□ -0.52
Shh-201ENSMUST00000002708 Wdr38Q9D994 303 aa11.83□□□□□ -0.52
Shh-201ENSMUST00000002708 Tenm3Q9WTS6 2715 aa11.83□□□□□ -0.52
Shh-201ENSMUST00000002708 Trav13n-1A0A0G2JEU8 110 aa11.82□□□□□ -0.52
Shh-201ENSMUST00000002708 CenpwQ3URR0 86 aa11.82□□□□□ -0.52
Shh-201ENSMUST00000002708 P01738 130 aa11.81□□□□□ -0.52
Shh-201ENSMUST00000002708 Gm9936Q8C864 160 aa11.81□□□□□ -0.52
Shh-201ENSMUST00000002708 Unc79Q0KK59 2596 aa11.81□□□□□ -0.52
Shh-201ENSMUST00000002708 Gm7849D3YX03 116 aa11.81□□□□□ -0.52
Shh-201ENSMUST00000002708 Spata25Q9DA57 226 aa11.81□□□□□ -0.52
Shh-201ENSMUST00000002708 Ube2wQ8VDW4 151 aa11.8□□□□□ -0.52
Shh-201ENSMUST00000002708 Gm6793B2RXM2 351 aa11.8□□□□□ -0.52
Shh-201ENSMUST00000002708 Defb26Q30KN7 186 aa11.8□□□□□ -0.52
Shh-201ENSMUST00000002708 Tmem101Q91VP7 257 aa11.8□□□□□ -0.52
Shh-201ENSMUST00000002708 Myo9aQ8C170 2542 aa11.8□□□□□ -0.52
Shh-201ENSMUST00000002708 MtorQ9JLN9 2549 aa11.79□□□□□ -0.52
Shh-201ENSMUST00000002708 Spink1P09036 80 aa11.79□□□□□ -0.52
Shh-201ENSMUST00000002708 4930432M17RikQ3V0W9 174 aa11.79□□□□□ -0.52
Shh-201ENSMUST00000002708 Znf740Q6NZQ6 180 aa11.79□□□□□ -0.52
Shh-201ENSMUST00000002708 MrapQ9D159 127 aa11.79□□□□□ -0.52
Shh-201ENSMUST00000002708 Ighv1-11A0A0A6YWI9 117 aa11.78□□□□□ -0.52
Retrieved 100 of 22,080 RNA–protein pairs in 42.3 ms