RNA–Protein interactions for RNA: YKR036C

CAF4, Transcript of WD40 repeat-containing protein associated with the CCR4-NOT complex, yeast

Gene CAF4, Length 1,932 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF4	YKR036C	OXR1	Q08952	273 aa		4.96	□□□□□ -1.62
CAF4	YKR036C	RPN13	O13563	156 aa		4.95	□□□□□ -1.62
CAF4	YKR036C	ILS1	P09436	1072 aa	Known RBP	4.95	□□□□□ -1.62
CAF4	YKR036C	MSD1	P15179	658 aa	Known RBP	4.95	□□□□□ -1.62
CAF4	YKR036C	TKL1	P23254	680 aa	Known RBP	4.95	□□□□□ -1.62
CAF4	YKR036C	PEX1	P24004	1043 aa		4.95	□□□□□ -1.62
CAF4	YKR036C	RPL8B	P29453	256 aa	Known RBP	4.95	□□□□□ -1.62
CAF4	YKR036C	PRP19	P32523	503 aa	Known RBP	4.95	□□□□□ -1.62
CAF4	YKR036C	HBS1	P32769	611 aa	Known RBP	4.95	□□□□□ -1.62
CAF4	YKR036C	TFB1	P32776	642 aa		4.95	□□□□□ -1.62
CAF4	YKR036C	PEP12	P32854	288 aa		4.95	□□□□□ -1.62
CAF4	YKR036C	PET10	P36139	283 aa		4.95	□□□□□ -1.62
CAF4	YKR036C	YBR285W	P38354	144 aa		4.95	□□□□□ -1.62
CAF4	YKR036C	MSG5	P38590	489 aa		4.95	□□□□□ -1.62
CAF4	YKR036C	UTP9	P38882	575 aa	Known RBP	4.95	□□□□□ -1.62
CAF4	YKR036C	STT3	P39007	718 aa	Known RBP	4.95	□□□□□ -1.62
CAF4	YKR036C	SAD1	P43589	448 aa		4.95	□□□□□ -1.62
CAF4	YKR036C	LIA1	P47120	325 aa	Known RBP	4.95	□□□□□ -1.62
CAF4	YKR036C	SCS3	P53012	380 aa		4.95	□□□□□ -1.62
CAF4	YKR036C	TAF12	Q03761	539 aa		4.95	□□□□□ -1.62
CAF4	YKR036C	YMR018W	Q04364	514 aa		4.95	□□□□□ -1.62
CAF4	YKR036C	URC2	Q04411	772 aa		4.95	□□□□□ -1.62
CAF4	YKR036C	GLO2	Q05584	274 aa		4.95	□□□□□ -1.62
CAF4	YKR036C	GUD1	Q07729	489 aa		4.95	□□□□□ -1.62
CAF4	YKR036C	VHS3	Q08438	674 aa		4.95	□□□□□ -1.62
CAF4	YKR036C	ARP6	Q12509	438 aa		4.95	□□□□□ -1.62
CAF4	YKR036C	ATG11	Q12527	1178 aa		4.95	□□□□□ -1.62
CAF4	YKR036C	RPL6B	P05739	176 aa	Known RBP	4.95	□□□□□ -1.62
CAF4	YKR036C	CDC31	P06704	161 aa	Known RBP	4.95	□□□□□ -1.62
CAF4	YKR036C	PBS2	P08018	668 aa		4.95	□□□□□ -1.62
CAF4	YKR036C	YAP1	P19880	650 aa	Known RBP	4.95	□□□□□ -1.62
CAF4	YKR036C	SAN1	P22470	610 aa		4.95	□□□□□ -1.62
CAF4	YKR036C	ZIP1	P31111	875 aa		4.95	□□□□□ -1.62
CAF4	YKR036C	IRE1	P32361	1115 aa		4.95	□□□□□ -1.62
CAF4	YKR036C	YKL023W	P36103	277 aa	Known RBP	4.95	□□□□□ -1.62
CAF4	YKR036C	REG2	P38232	338 aa		4.95	□□□□□ -1.62
CAF4	YKR036C	RRT2	P38332	387 aa		4.95	□□□□□ -1.62
CAF4	YKR036C	LSM12	P38828	187 aa	Known RBP	4.95	□□□□□ -1.62
CAF4	YKR036C	CCT6	P39079	546 aa		4.95	□□□□□ -1.62
CAF4	YKR036C	IRC6	P43615	237 aa		4.95	□□□□□ -1.62
CAF4	YKR036C	YGR153W	P48238	217 aa		4.95	□□□□□ -1.62
CAF4	YKR036C	NUT1	P53114	1132 aa		4.95	□□□□□ -1.62
CAF4	YKR036C	LSB1	P53281	241 aa		4.95	□□□□□ -1.62
CAF4	YKR036C	DIP5	P53388	608 aa		4.95	□□□□□ -1.62
CAF4	YKR036C	CNM67	P53865	581 aa	Known RBP	4.95	□□□□□ -1.62
CAF4	YKR036C	IPI3	P53877	555 aa		4.95	□□□□□ -1.62
CAF4	YKR036C	YNL108C	P53929	270 aa		4.95	□□□□□ -1.62
CAF4	YKR036C	CEF1	Q03654	590 aa	Predicted RBP	4.95	□□□□□ -1.62
CAF4	YKR036C	EMI2	Q04409	500 aa	Known RBP	4.95	□□□□□ -1.62
CAF4	YKR036C	DYN3	Q04949	312 aa		4.95	□□□□□ -1.62
CAF4	YKR036C	YPR196W	Q06595	470 aa		4.95	□□□□□ -1.62
CAF4	YKR036C	YDL109C	Q12103	647 aa		4.95	□□□□□ -1.62
CAF4	YKR036C	ACF2	Q12168	779 aa		4.95	□□□□□ -1.62
CAF4	YKR036C	YOR342C	Q12182	319 aa		4.95	□□□□□ -1.62
CAF4	YKR036C	YDR461C-A	Q2V2P7	80 aa		4.95	□□□□□ -1.62
CAF4	YKR036C	ECM29	P38737	1868 aa		4.95	□□□□□ -1.62
CAF4	YKR036C	MAK16	P10962	306 aa	Predicted RBP	4.94	□□□□□ -1.62
CAF4	YKR036C	MRP13	P12686	339 aa		4.94	□□□□□ -1.62
CAF4	YKR036C	ISY1	P21374	235 aa	Predicted RBP	4.94	□□□□□ -1.62
CAF4	YKR036C	GFD2	P25370	566 aa	Known RBP	4.94	□□□□□ -1.62
CAF4	YKR036C	TPS2	P31688	896 aa	Known RBP	4.94	□□□□□ -1.62
CAF4	YKR036C	SMI1	P32566	505 aa		4.94	□□□□□ -1.62
CAF4	YKR036C	VMA8	P32610	256 aa	Known RBP	4.94	□□□□□ -1.62
CAF4	YKR036C	UTP30	P36144	274 aa	Known RBP	4.94	□□□□□ -1.62
CAF4	YKR036C	TGL4	P36165	910 aa		4.94	□□□□□ -1.62
CAF4	YKR036C	YPK3	P38070	525 aa		4.94	□□□□□ -1.62
CAF4	YKR036C	UBP7	P40453	1071 aa		4.94	□□□□□ -1.62
CAF4	YKR036C	CSM2	P40465	213 aa		4.94	□□□□□ -1.62
CAF4	YKR036C	ALA1	P40825	983 aa	Known RBP	4.94	□□□□□ -1.62
CAF4	YKR036C	SBE2	P42223	864 aa	Known RBP	4.94	□□□□□ -1.62
CAF4	YKR036C	TOS3	P43637	560 aa		4.94	□□□□□ -1.62
CAF4	YKR036C	MNN11	P46985	422 aa	Known RBP	4.94	□□□□□ -1.62
CAF4	YKR036C	SSN8	P47821	323 aa		4.94	□□□□□ -1.62
CAF4	YKR036C	YTP1	P53584	459 aa		4.94	□□□□□ -1.62
CAF4	YKR036C	PGA2	P53903	129 aa		4.94	□□□□□ -1.62
CAF4	YKR036C	REX2	P54964	269 aa	Known RBP	4.94	□□□□□ -1.62
CAF4	YKR036C	YMR027W	Q04371	470 aa		4.94	□□□□□ -1.62
CAF4	YKR036C	YMR321C	Q04898	105 aa		4.94	□□□□□ -1.62
CAF4	YKR036C	CDA1	Q06702	301 aa		4.94	□□□□□ -1.62
CAF4	YKR036C	SGT1	Q08446	395 aa		4.94	□□□□□ -1.62
CAF4	YKR036C	MCH5	Q08777	521 aa		4.94	□□□□□ -1.62
CAF4	YKR036C	SPE3	Q12074	293 aa	Known RBP	4.94	□□□□□ -1.62
CAF4	YKR036C	TUF1	P02992	437 aa	Known RBP	4.93	□□□□□ -1.62
CAF4	YKR036C	RNR3	P21672	869 aa	Known RBP	4.93	□□□□□ -1.62
CAF4	YKR036C	AAD3	P25612	363 aa		4.93	□□□□□ -1.62
CAF4	YKR036C	PRR1	P28708	518 aa		4.93	□□□□□ -1.62
CAF4	YKR036C	SLX5	P32828	619 aa	Known RBP	4.93	□□□□□ -1.62
CAF4	YKR036C	SSO1	P32867	290 aa		4.93	□□□□□ -1.62
CAF4	YKR036C	SRP101	P32916	621 aa		4.93	□□□□□ -1.62
CAF4	YKR036C	PEX5	P35056	612 aa		4.93	□□□□□ -1.62
CAF4	YKR036C	YKL063C	P35725	167 aa		4.93	□□□□□ -1.62
CAF4	YKR036C	STB6	P36085	766 aa		4.93	□□□□□ -1.62
CAF4	YKR036C	YRO2	P38079	344 aa		4.93	□□□□□ -1.62
CAF4	YKR036C	FRT2	P39734	528 aa		4.93	□□□□□ -1.62
CAF4	YKR036C	SSP120	P39931	234 aa	Known RBP	4.93	□□□□□ -1.62
CAF4	YKR036C	YER137C	P40083	148 aa	Known RBP	4.93	□□□□□ -1.62
CAF4	YKR036C	YJL107C	P42947	387 aa		4.93	□□□□□ -1.62
CAF4	YKR036C	IML2	P47031	731 aa		4.93	□□□□□ -1.62
CAF4	YKR036C	MRK1	P50873	501 aa		4.93	□□□□□ -1.62
CAF4	YKR036C	LIF1	P53150	421 aa		4.93	□□□□□ -1.62

Retrieved 100 of 5,963 RNA–protein pairs in 20.3 ms