RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 DYNLL1P63167 89 aaKnown RBP24.07■■□□□ 1.44
CCDC88B-203ENST00000359902 SEC23AQ15436 765 aa24.07■■□□□ 1.44
CCDC88B-203ENST00000359902 ZRSR1Q15695 479 aaKnown RBP24.07■■□□□ 1.44
CCDC88B-203ENST00000359902 NOSTRINQ8IVI9 506 aa24.07■■□□□ 1.44
CCDC88B-203ENST00000359902 CACTINQ8WUQ7 758 aaKnown RBP24.07■■□□□ 1.44
CCDC88B-203ENST00000359902 UBAC1Q9BSL1 405 aa24.07■■□□□ 1.44
CCDC88B-203ENST00000359902 NARFQ9UHQ1 456 aa24.07■■□□□ 1.44
CCDC88B-203ENST00000359902 BTBD18B2RXH4 712 aa24.06■■□□□ 1.44
CCDC88B-203ENST00000359902 DYNC1I1O14576 645 aa24.06■■□□□ 1.44
CCDC88B-203ENST00000359902 RRP9O43818 475 aaKnown RBP24.06■■□□□ 1.44
CCDC88B-203ENST00000359902 VPS72Q15906 364 aa24.06■■□□□ 1.44
CCDC88B-203ENST00000359902 MYRIPQ8NFW9 859 aa24.06■■□□□ 1.44
CCDC88B-203ENST00000359902 ESR2Q92731 530 aa24.06■■□□□ 1.44
CCDC88B-203ENST00000359902 NLRP12P59046 1061 aa24.06■■□□□ 1.44
CCDC88B-203ENST00000359902 RPS8P62241 208 aaKnown RBP24.06■■□□□ 1.44
CCDC88B-203ENST00000359902 RC3H1Q5TC82 1133 aaKnown RBP24.06■■□□□ 1.44
CCDC88B-203ENST00000359902 RESP18Q5W5W9 173 aa24.06■■□□□ 1.44
CCDC88B-203ENST00000359902 CMTR1Q8N1G2 835 aaKnown RBP24.06■■□□□ 1.44
CCDC88B-203ENST00000359902 CCDC82Q8N4S0 544 aa24.06■■□□□ 1.44
CCDC88B-203ENST00000359902 SRP68Q9UHB9 627 aaKnown RBP24.06■■□□□ 1.44
CCDC88B-203ENST00000359902 KCNJ14Q9UNX9 436 aa24.06■■□□□ 1.44
CCDC88B-203ENST00000359902 NUP133Q8WUM0 1156 aa24.05■■□□□ 1.44
CCDC88B-203ENST00000359902 CLIC6Q96NY7 704 aa24.05■■□□□ 1.44
CCDC88B-203ENST00000359902 NYXQ9GZU5 481 aa24.05■■□□□ 1.44
CCDC88B-203ENST00000359902 BIN1O00499 593 aa24.05■■□□□ 1.44
CCDC88B-203ENST00000359902 RPS6KA4O75676 772 aa24.05■■□□□ 1.44
CCDC88B-203ENST00000359902 DEXIO95424 95 aa24.05■■□□□ 1.44
CCDC88B-203ENST00000359902 KLRK1P26718 216 aa24.05■■□□□ 1.44
CCDC88B-203ENST00000359902 HSP90AA2PQ14568 343 aaPredicted RBP24.05■■□□□ 1.44
CCDC88B-203ENST00000359902 SAFBQ15424 915 aaKnown RBP eCLIP24.05■■□□□ 1.44
CCDC88B-203ENST00000359902 DIS3L2Q8IYB7 885 aaKnown RBP24.05■■□□□ 1.44
CCDC88B-203ENST00000359902 SETDB2Q96T68 719 aa24.05■■□□□ 1.44
CCDC88B-203ENST00000359902 BRIP1Q9BX63 1249 aa24.05■■□□□ 1.44
CCDC88B-203ENST00000359902 SCN7AQ01118 1682 aa24.04■■□□□ 1.44
CCDC88B-203ENST00000359902 TNKSO95271 1327 aa24.04■■□□□ 1.44
CCDC88B-203ENST00000359902 CUTAO60888 179 aa24.04■■□□□ 1.44
CCDC88B-203ENST00000359902 TOB1P50616 345 aaPredicted RBP24.04■■□□□ 1.44
CCDC88B-203ENST00000359902 NLRP3Q96P20 1036 aa24.04■■□□□ 1.44
CCDC88B-203ENST00000359902 SEMA3EO15041 775 aa24.04■■□□□ 1.44
CCDC88B-203ENST00000359902 NGLY1Q96IV0 654 aa24.04■■□□□ 1.44
CCDC88B-203ENST00000359902 CYP2D7A0A087X1C5 515 aa24.03■■□□□ 1.44
CCDC88B-203ENST00000359902 TOM1O60784 492 aa24.03■■□□□ 1.44
CCDC88B-203ENST00000359902 C8orf37Q96NL8 207 aa24.03■■□□□ 1.44
CCDC88B-203ENST00000359902 FOXP1Q9H334 677 aaPredicted RBP24.03■■□□□ 1.44
CCDC88B-203ENST00000359902 NBPF5PQ86XG9 351 aaPredicted RBP24.02■■□□□ 1.44
CCDC88B-203ENST00000359902 LRRC8AQ8IWT6 810 aa24.02■■□□□ 1.44
CCDC88B-203ENST00000359902 TUBE1Q9UJT0 475 aa24.02■■□□□ 1.44
CCDC88B-203ENST00000359902 ENAHQ8N8S7 591 aaPredicted RBP24.02■■□□□ 1.44
CCDC88B-203ENST00000359902 NSUN4Q96CB9 384 aaKnown RBP24.02■■□□□ 1.44
CCDC88B-203ENST00000359902 ZSCAN10Q96SZ4 725 aaPredicted RBP24.02■■□□□ 1.44
CCDC88B-203ENST00000359902 FGRP09769 529 aa24.01■■□□□ 1.43
CCDC88B-203ENST00000359902 RBM10P98175 930 aaKnown RBP24.01■■□□□ 1.43
CCDC88B-203ENST00000359902 ARID5BQ14865 1188 aa24.01■■□□□ 1.43
CCDC88B-203ENST00000359902 PPP2R5BQ15173 497 aa24.01■■□□□ 1.43
CCDC88B-203ENST00000359902 CTR9Q6PD62 1173 aa24.01■■□□□ 1.43
CCDC88B-203ENST00000359902 ZPR1O75312 459 aa24■■□□□ 1.43
CCDC88B-203ENST00000359902 KRI1Q8N9T8 703 aaKnown RBP24■■□□□ 1.43
CCDC88B-203ENST00000359902 GNPATO15228 680 aa24■■□□□ 1.43
CCDC88B-203ENST00000359902 HIBADHP31937 336 aaKnown RBP24■■□□□ 1.43
CCDC88B-203ENST00000359902 MECOMQ03112 1051 aa24■■□□□ 1.43
CCDC88B-203ENST00000359902 CCDC24Q8N4L8 307 aa24■■□□□ 1.43
CCDC88B-203ENST00000359902 ANKRD2Q9GZV1 360 aa24■■□□□ 1.43
CCDC88B-203ENST00000359902 TFCP2L1Q9NZI6 479 aa24■■□□□ 1.43
CCDC88B-203ENST00000359902 PDS5AQ29RF7 1337 aaKnown RBP23.99■■□□□ 1.43
CCDC88B-203ENST00000359902 BAZ2AQ9UIF9 1905 aaKnown RBP23.99■■□□□ 1.43
CCDC88B-203ENST00000359902 NR5A1Q13285 461 aa23.99■■□□□ 1.43
CCDC88B-203ENST00000359902 NCAPHQ15003 741 aa23.99■■□□□ 1.43
CCDC88B-203ENST00000359902 LONRF3Q496Y0 759 aa23.99■■□□□ 1.43
CCDC88B-203ENST00000359902 RILPL1Q5EBL4 403 aa23.99■■□□□ 1.43
CCDC88B-203ENST00000359902 TPTE2Q6XPS3 522 aa23.99■■□□□ 1.43
CCDC88B-203ENST00000359902 RNF26Q9BY78 433 aaPredicted RBP23.99■■□□□ 1.43
CCDC88B-203ENST00000359902 KCNH3Q9ULD8 1083 aa23.99■■□□□ 1.43
CCDC88B-203ENST00000359902 DUOX1Q9NRD9 1551 aa23.99■■□□□ 1.43
CCDC88B-203ENST00000359902 NEMFO60524 1076 aa23.99■■□□□ 1.43
CCDC88B-203ENST00000359902 ISM2Q6H9L7 571 aa23.99■■□□□ 1.43
CCDC88B-203ENST00000359902 MYH2Q9UKX2 1941 aa23.98■■□□□ 1.43
CCDC88B-203ENST00000359902 USP17L12C9JPN9 530 aa23.98■■□□□ 1.43
CCDC88B-203ENST00000359902 USP17L21D6R901 530 aa23.98■■□□□ 1.43
CCDC88B-203ENST00000359902 PRDM1O75626 825 aa23.98■■□□□ 1.43
CCDC88B-203ENST00000359902 PCP11498 1178 aaKnown RBP23.98■■□□□ 1.43
CCDC88B-203ENST00000359902 GTF2F1P35269 517 aaKnown RBP eCLIP23.98■■□□□ 1.43
CCDC88B-203ENST00000359902 PNOCQ13519 176 aa23.98■■□□□ 1.43
CCDC88B-203ENST00000359902 OXER1Q8TDS5 423 aa23.98■■□□□ 1.43
CCDC88B-203ENST00000359902 FAM13BQ9NYF5 915 aa23.98■■□□□ 1.43
CCDC88B-203ENST00000359902 TM4SF1P30408 202 aa23.98■■□□□ 1.43
CCDC88B-203ENST00000359902 FUT2Q10981 343 aa23.98■■□□□ 1.43
CCDC88B-203ENST00000359902 KRBA2Q6ZNG9 492 aa23.98■■□□□ 1.43
CCDC88B-203ENST00000359902 FILIP1Q7Z7B0 1213 aa23.98■■□□□ 1.43
CCDC88B-203ENST00000359902 METTL16Q86W50 562 aaKnown RBP23.98■■□□□ 1.43
CCDC88B-203ENST00000359902 AMIGO3Q86WK7 504 aa23.98■■□□□ 1.43
CCDC88B-203ENST00000359902 COL24A1Q17RW2 1714 aa23.97■■□□□ 1.43
CCDC88B-203ENST00000359902 SMTNL1A8MU46 457 aa23.97■■□□□ 1.43
CCDC88B-203ENST00000359902 IFIT1BQ5T764 474 aaKnown RBP23.97■■□□□ 1.43
CCDC88B-203ENST00000359902 SHISA4Q96DD7 197 aa23.97■■□□□ 1.43
CCDC88B-203ENST00000359902 FBXO2Q9UK22 296 aaPredicted RBP23.97■■□□□ 1.43
CCDC88B-203ENST00000359902 PTPREP23469 700 aa23.96■■□□□ 1.43
CCDC88B-203ENST00000359902 PKN1Q16512 942 aa23.96■■□□□ 1.43
CCDC88B-203ENST00000359902 RTCBQ9Y3I0 505 aaKnown RBP23.96■■□□□ 1.43
CCDC88B-203ENST00000359902 PCDHB6Q9Y5E3 794 aa23.96■■□□□ 1.43
CCDC88B-203ENST00000359902 IKBKBO14920 756 aa23.96■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 120.4 ms