RNA–Protein interactions for RNA: ENSMUST00000113706.9

Trim39-203, Transcript of E3 ubiquitin-protein ligase TRIM39, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim39, Length 3,204 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39-203ENSMUST00000113706 Tbc1d23Q8K0F1 684 aa18.37■□□□□ 0.53
Trim39-203ENSMUST00000113706 Peak1Q69Z38 1735 aa18.37■□□□□ 0.53
Trim39-203ENSMUST00000113706 Lamb1P02469 1786 aa18.37■□□□□ 0.53
Trim39-203ENSMUST00000113706 Pramel3A2AHA7 463 aa18.37■□□□□ 0.53
Trim39-203ENSMUST00000113706 Gm7903A2AWL1 463 aa18.37■□□□□ 0.53
Trim39-203ENSMUST00000113706 AV320801A2AWL3 467 aa18.37■□□□□ 0.53
Trim39-203ENSMUST00000113706 Gm15023L7MUB4 467 aa18.37■□□□□ 0.53
Trim39-203ENSMUST00000113706 Becn1O88597 448 aa18.37■□□□□ 0.53
Trim39-203ENSMUST00000113706 Cplx1P63040 134 aa18.37■□□□□ 0.53
Trim39-203ENSMUST00000113706 Gzf1Q4VBD9 706 aa18.37■□□□□ 0.53
Trim39-203ENSMUST00000113706 Pramel6Q810Y9 485 aa18.37■□□□□ 0.53
Trim39-203ENSMUST00000113706 Q8C6G1 249 aa18.37■□□□□ 0.53
Trim39-203ENSMUST00000113706 Dynll2Q9D0M5 89 aa18.37■□□□□ 0.53
Trim39-203ENSMUST00000113706 Jag1Q9QXX0 1218 aa18.37■□□□□ 0.53
Trim39-203ENSMUST00000113706 Nrxn2E9Q7X7 1710 aa18.37■□□□□ 0.53
Trim39-203ENSMUST00000113706 WdpcpQ8C456 722 aa18.36■□□□□ 0.53
Trim39-203ENSMUST00000113706 WaslQ91YD9 501 aa18.36■□□□□ 0.53
Trim39-203ENSMUST00000113706 Stk39Q9Z1W9 556 aa18.36■□□□□ 0.53
Trim39-203ENSMUST00000113706 Myl3P09542 204 aa18.36■□□□□ 0.53
Trim39-203ENSMUST00000113706 Hvcn1Q3U2S8 269 aa18.36■□□□□ 0.53
Trim39-203ENSMUST00000113706 Tbc1d5Q80XQ2 815 aa18.36■□□□□ 0.53
Trim39-203ENSMUST00000113706 Nup133Q8R0G9 1155 aa18.36■□□□□ 0.53
Trim39-203ENSMUST00000113706 Stk38Q91VJ4 465 aa18.36■□□□□ 0.53
Trim39-203ENSMUST00000113706 Gtf2iQ9ESZ8 998 aaKnown RBP18.36■□□□□ 0.53
Trim39-203ENSMUST00000113706 Cyp2ab1S4R196 498 aa18.36■□□□□ 0.53
Trim39-203ENSMUST00000113706 Ftl1P29391 183 aa18.36■□□□□ 0.53
Trim39-203ENSMUST00000113706 Ndufv1Q91YT0 464 aa18.36■□□□□ 0.53
Trim39-203ENSMUST00000113706 Cep89Q9CZX2 791 aa18.36■□□□□ 0.53
Trim39-203ENSMUST00000113706 Rai14Q9EP71 979 aaKnown RBP18.36■□□□□ 0.53
Trim39-203ENSMUST00000113706 Plekhg2Q6KAU7 1340 aa18.36■□□□□ 0.53
Trim39-203ENSMUST00000113706 Terf1P70371 421 aa18.35■□□□□ 0.53
Trim39-203ENSMUST00000113706 Cfap157Q0VFX2 523 aa18.35■□□□□ 0.53
Trim39-203ENSMUST00000113706 Cep131Q62036 1060 aa18.35■□□□□ 0.53
Trim39-203ENSMUST00000113706 Kcnj14Q8JZN3 434 aa18.35■□□□□ 0.53
Trim39-203ENSMUST00000113706 Wasf1Q8R5H6 559 aa18.35■□□□□ 0.53
Trim39-203ENSMUST00000113706 Yeats4Q9CR11 227 aaKnown RBP18.35■□□□□ 0.53
Trim39-203ENSMUST00000113706 Ano3A2AHL1 981 aa18.35■□□□□ 0.53
Trim39-203ENSMUST00000113706 Kif23E9Q5G3 953 aa18.35■□□□□ 0.53
Trim39-203ENSMUST00000113706 U2af2P26369 475 aaKnown RBP18.35■□□□□ 0.53
Trim39-203ENSMUST00000113706 XpcP51612 930 aa18.35■□□□□ 0.53
Trim39-203ENSMUST00000113706 Epha2Q03145 977 aa18.35■□□□□ 0.53
Trim39-203ENSMUST00000113706 Prom2Q3UUY6 835 aa18.35■□□□□ 0.53
Trim39-203ENSMUST00000113706 Fxr1Q61584 677 aaKnown RBP18.35■□□□□ 0.53
Trim39-203ENSMUST00000113706 Gpatch3Q8BIY1 525 aa18.34■□□□□ 0.53
Trim39-203ENSMUST00000113706 Rrp9Q91WM3 475 aaKnown RBP18.34■□□□□ 0.53
Trim39-203ENSMUST00000113706 Hps4Q99KG7 671 aa18.34■□□□□ 0.53
Trim39-203ENSMUST00000113706 Pik3ap1Q9EQ32 811 aa18.34■□□□□ 0.53
Trim39-203ENSMUST00000113706 Atp6v1aP50516 617 aaKnown RBP18.34■□□□□ 0.53
Trim39-203ENSMUST00000113706 Tmed8Q3UHI4 326 aa18.34■□□□□ 0.53
Trim39-203ENSMUST00000113706 Mxd3Q80US8 206 aa18.34■□□□□ 0.53
Trim39-203ENSMUST00000113706 Vps37dQ810I0 261 aa18.34■□□□□ 0.53
Trim39-203ENSMUST00000113706 Telo2Q9DC40 840 aaKnown RBP18.34■□□□□ 0.53
Trim39-203ENSMUST00000113706 Dusp10Q9ESS0 483 aa18.34■□□□□ 0.53
Trim39-203ENSMUST00000113706 Ltbp2O08999 1813 aa18.34■□□□□ 0.53
Trim39-203ENSMUST00000113706 Sptlc2P97363 560 aaKnown RBP18.34■□□□□ 0.53
Trim39-203ENSMUST00000113706 Tbc1d31Q6NXY1 996 aa18.34■□□□□ 0.53
Trim39-203ENSMUST00000113706 Usp50Q6P8X6 390 aa18.34■□□□□ 0.53
Trim39-203ENSMUST00000113706 Cdca8Q8BHX3 289 aa18.34■□□□□ 0.53
Trim39-203ENSMUST00000113706 Ubac1Q8VDI7 409 aa18.34■□□□□ 0.53
Trim39-203ENSMUST00000113706 Clstn1Q9EPL2 979 aa18.34■□□□□ 0.53
Trim39-203ENSMUST00000113706 Tbc1d8bA3KGB4 1114 aa18.33■□□□□ 0.53
Trim39-203ENSMUST00000113706 Kifc2O08672 792 aa18.33■□□□□ 0.53
Trim39-203ENSMUST00000113706 Usp53P15975 1069 aa18.33■□□□□ 0.53
Trim39-203ENSMUST00000113706 Kif3aP28741 701 aa18.33■□□□□ 0.53
Trim39-203ENSMUST00000113706 Ptpn12P35831 775 aa18.33■□□□□ 0.53
Trim39-203ENSMUST00000113706 Oxsr1Q6P9R2 527 aa18.33■□□□□ 0.53
Trim39-203ENSMUST00000113706 Ankrd13aQ80UP5 588 aa18.33■□□□□ 0.53
Trim39-203ENSMUST00000113706 ParnQ8VDG3 624 aa18.33■□□□□ 0.53
Trim39-203ENSMUST00000113706 Rrp1P56183 494 aaKnown RBP18.33■□□□□ 0.52
Trim39-203ENSMUST00000113706 Ppp2r5bQ6PD28 497 aa18.33■□□□□ 0.52
Trim39-203ENSMUST00000113706 Kif1bpQ6ZPU9 617 aa18.33■□□□□ 0.52
Trim39-203ENSMUST00000113706 Clec11aO88200 328 aa18.32■□□□□ 0.52
Trim39-203ENSMUST00000113706 EzrP26040 586 aaKnown RBP18.32■□□□□ 0.52
Trim39-203ENSMUST00000113706 Znf667Q2TL60 609 aa18.32■□□□□ 0.52
Trim39-203ENSMUST00000113706 Kcnf1Q7TSH7 493 aa18.32■□□□□ 0.52
Trim39-203ENSMUST00000113706 Plcd3Q8K2J0 785 aa18.32■□□□□ 0.52
Trim39-203ENSMUST00000113706 Etnk1Q9D4V0 363 aa18.32■□□□□ 0.52
Trim39-203ENSMUST00000113706 A0A1Y7VML8 143 aa18.32■□□□□ 0.52
Trim39-203ENSMUST00000113706 Traf3ip1Q149C2 625 aa18.32■□□□□ 0.52
Trim39-203ENSMUST00000113706 Prpf38aQ4FK66 312 aaKnown RBP18.32■□□□□ 0.52
Trim39-203ENSMUST00000113706 Tekt3Q6X6Z7 490 aa18.32■□□□□ 0.52
Trim39-203ENSMUST00000113706 Tsen34Q8BMZ5 316 aa18.32■□□□□ 0.52
Trim39-203ENSMUST00000113706 Skor1Q8BX46 964 aa18.32■□□□□ 0.52
Trim39-203ENSMUST00000113706 Evc2Q8K1G2 1220 aa18.32■□□□□ 0.52
Trim39-203ENSMUST00000113706 Hps3Q91VB4 1002 aa18.32■□□□□ 0.52
Trim39-203ENSMUST00000113706 Btaf1E9QAE3 1848 aa18.32■□□□□ 0.52
Trim39-203ENSMUST00000113706 Zscan20B2KFW1 1030 aa18.32■□□□□ 0.52
Trim39-203ENSMUST00000113706 Grem2O88273 168 aa18.32■□□□□ 0.52
Trim39-203ENSMUST00000113706 Apba2P98084 750 aa18.32■□□□□ 0.52
Trim39-203ENSMUST00000113706 HibadhQ99L13 335 aaKnown RBP18.32■□□□□ 0.52
Trim39-203ENSMUST00000113706 NenfQ9CQ45 171 aa18.32■□□□□ 0.52
Trim39-203ENSMUST00000113706 Zfp831A2ADM8 1628 aa18.31■□□□□ 0.52
Trim39-203ENSMUST00000113706 Stx8O88983 236 aa18.31■□□□□ 0.52
Trim39-203ENSMUST00000113706 DnttP09838 530 aa18.31■□□□□ 0.52
Trim39-203ENSMUST00000113706 Calm1P0DP26 149 aaKnown RBP18.31■□□□□ 0.52
Trim39-203ENSMUST00000113706 Calm2P0DP27 149 aaKnown RBP18.31■□□□□ 0.52
Trim39-203ENSMUST00000113706 Calm3P0DP28 149 aaKnown RBP18.31■□□□□ 0.52
Trim39-203ENSMUST00000113706 1700013D24RikQ0P521 120 aa18.31■□□□□ 0.52
Trim39-203ENSMUST00000113706 Rbm28Q8CGC6 750 aaKnown RBP18.31■□□□□ 0.52
Trim39-203ENSMUST00000113706 Usp17lbE9Q9U0 468 aa18.31■□□□□ 0.52
Retrieved 100 of 22,080 RNA–protein pairs in 61.8 ms