RNA–Protein interactions for RNA: ENST00000640653.1

VEGFA-232, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,170 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-232ENST00000640653 LCE4AQ5TA78 99 aa8.76□□□□□ -1.01
VEGFA-232ENST00000640653 LCE1DQ5T752 114 aa8.75□□□□□ -1.01
VEGFA-232ENST00000640653 KRTAP4-3Q9BYR4 195 aa8.71□□□□□ -1.02
VEGFA-232ENST00000640653 GPR98Q8WXG9 6306 aa8.66□□□□□ -1.02
VEGFA-232ENST00000640653 KRTAP12-3P60328 96 aa8.66□□□□□ -1.02
VEGFA-232ENST00000640653 MT4P47944 62 aa8.65□□□□□ -1.02
VEGFA-232ENST00000640653 MIR22HGQ0VDD5 57 aa8.59□□□□□ -1.03
VEGFA-232ENST00000640653 KRTAP5-4Q6L8H1 288 aa8.56□□□□□ -1.04
VEGFA-232ENST00000640653 HMCN1Q96RW7 5635 aa8.54□□□□□ -1.04
VEGFA-232ENST00000640653 KRTAP25-1Q3LHN0 102 aa8.51□□□□□ -1.05
VEGFA-232ENST00000640653 K7ERS5 55 aa8.49□□□□□ -1.05
VEGFA-232ENST00000640653 KRTAP4-7Q9BYR0 210 aa8.49□□□□□ -1.05
VEGFA-232ENST00000640653 V9GYY9 64 aa8.43□□□□□ -1.06
VEGFA-232ENST00000640653 KRTAP4-6Q9BYQ5 205 aa8.38□□□□□ -1.07
VEGFA-232ENST00000640653 PSPHP1O15172 72 aa8.36□□□□□ -1.07
VEGFA-232ENST00000640653 PCP4P48539 62 aa8.32□□□□□ -1.08
VEGFA-232ENST00000640653 Q1T7F1 81 aa8.32□□□□□ -1.08
VEGFA-232ENST00000640653 AHNAK2Q8IVF2 5795 aa8.24□□□□□ -1.09
VEGFA-232ENST00000640653 KRTAP19-4Q3LI73 84 aa8.21□□□□□ -1.1
VEGFA-232ENST00000640653 KRTAP5-5Q701N2 237 aaPredicted RBP8.2□□□□□ -1.1
VEGFA-232ENST00000640653 KRTAP23-1A1A580 65 aa8.19□□□□□ -1.1
VEGFA-232ENST00000640653 KRTAP5-10Q6L8G5 202 aa8.15□□□□□ -1.1
VEGFA-232ENST00000640653 A6NED7 52 aa8.1□□□□□ -1.11
VEGFA-232ENST00000640653 KRTAP20-2Q3LI61 65 aa8.09□□□□□ -1.11
VEGFA-232ENST00000640653 KRTAP15-1Q3LI76 137 aa8.07□□□□□ -1.12
VEGFA-232ENST00000640653 SPRR5A0A1B0GTR4 108 aa8.06□□□□□ -1.12
VEGFA-232ENST00000640653 LOC100996750A0A140TA64 210 aa8.05□□□□□ -1.12
VEGFA-232ENST00000640653 KRTAP12-4P60329 112 aa8.05□□□□□ -1.12
VEGFA-232ENST00000640653 CDC42SE1Q9NRR8 79 aa8□□□□□ -1.13
VEGFA-232ENST00000640653 LCE3CQ5T5A8 94 aa7.96□□□□□ -1.14
VEGFA-232ENST00000640653 KRTAP5-3Q6L8H2 238 aa7.96□□□□□ -1.14
VEGFA-232ENST00000640653 KRTAP5-7Q6L8G8 165 aa7.86□□□□□ -1.15
VEGFA-232ENST00000640653 ROMO1P60602 79 aa7.85□□□□□ -1.15
VEGFA-232ENST00000640653 SYNE1Q8NF91 8797 aaKnown RBP7.8□□□□□ -1.16
VEGFA-232ENST00000640653 RPS28P62857 69 aaKnown RBP7.79□□□□□ -1.16
VEGFA-232ENST00000640653 MT1AP04731 61 aa7.64□□□□□ -1.19
VEGFA-232ENST00000640653 KRTAP6-1Q3LI64 71 aa7.57□□□□□ -1.2
VEGFA-232ENST00000640653 KRTAP5-2Q701N4 177 aa7.49□□□□□ -1.21
VEGFA-232ENST00000640653 KRTAP9-6A8MVA2 160 aa7.47□□□□□ -1.21
VEGFA-232ENST00000640653 KRTAP4-11Q9BYQ6 195 aa7.4□□□□□ -1.22
VEGFA-232ENST00000640653 KRTAP9-4Q9BYQ2 154 aa7.39□□□□□ -1.23
VEGFA-232ENST00000640653 KRTAP6-2Q3LI66 62 aa7.26□□□□□ -1.25
VEGFA-232ENST00000640653 KRTAP5-8O75690 187 aa7.14□□□□□ -1.27
VEGFA-232ENST00000640653 MT3P25713 68 aa7.01□□□□□ -1.29
VEGFA-232ENST00000640653 OBSCNQ5VST9 7968 aa6.89□□□□□ -1.31
VEGFA-232ENST00000640653 PRO0628Q9UI54 55 aa6.89□□□□□ -1.31
VEGFA-232ENST00000640653 BRK1Q8WUW1 75 aa6.84□□□□□ -1.31
VEGFA-232ENST00000640653 KRTAP9-9Q9BYP9 154 aa6.82□□□□□ -1.32
VEGFA-232ENST00000640653 MUC5BQ9HC84 5762 aaPredicted RBP6.78□□□□□ -1.32
VEGFA-232ENST00000640653 MUC5ACP98088 5654 aa6.75□□□□□ -1.33
VEGFA-232ENST00000640653 AHNAKQ09666 5890 aaKnown RBP6.74□□□□□ -1.33
VEGFA-232ENST00000640653 KRTAP5-1Q6L8H4 278 aa6.72□□□□□ -1.33
VEGFA-232ENST00000640653 PMAIP1Q13794 54 aa6.52□□□□□ -1.37
VEGFA-232ENST00000640653 LCE1EQ5T753 118 aa6.44□□□□□ -1.38
VEGFA-232ENST00000640653 KTN1-AS1Q86SY8 53 aa6.23□□□□□ -1.41
VEGFA-232ENST00000640653 PRAC1Q96KF2 57 aa6.18□□□□□ -1.42
VEGFA-232ENST00000640653 H3BS24 57 aa6.15□□□□□ -1.42
VEGFA-232ENST00000640653 LCE1BQ5T7P3 118 aa6.07□□□□□ -1.44
VEGFA-232ENST00000640653 KRTAP4-2Q9BYR5 136 aa6.07□□□□□ -1.44
VEGFA-232ENST00000640653 LCE1CQ5T751 118 aa5.97□□□□□ -1.45
VEGFA-232ENST00000640653 LCE3DQ9BYE3 92 aa5.74□□□□□ -1.49
VEGFA-232ENST00000640653 A0A0A0MQY5 61 aa5.64□□□□□ -1.51
VEGFA-232ENST00000640653 KRTAP4-12Q9BQ66 201 aa5.51□□□□□ -1.53
VEGFA-232ENST00000640653 KRTAP5-11Q6L8G4 156 aa5.42□□□□□ -1.54
VEGFA-232ENST00000640653 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.42□□□□□ -1.54
VEGFA-232ENST00000640653 LCE3EQ5T5B0 92 aa5.39□□□□□ -1.55
VEGFA-232ENST00000640653 LUZP6Q538Z0 58 aa5.32□□□□□ -1.56
VEGFA-232ENST00000640653 LCE1FQ5T754 118 aa5.3□□□□□ -1.56
VEGFA-232ENST00000640653 KRTAP21-2Q3LI59 83 aa4.99□□□□□ -1.61
VEGFA-232ENST00000640653 NDUFAF8A1L188 74 aa4.97□□□□□ -1.61
VEGFA-232ENST00000640653 PHGR1C9JFL3 82 aa4.77□□□□□ -1.65
VEGFA-232ENST00000640653 KRTAP4-4Q9BYR3 166 aa4.57□□□□□ -1.68
VEGFA-232ENST00000640653 INE1O15225 51 aa4.33□□□□□ -1.72
VEGFA-232ENST00000640653 MUC19Q7Z5P9 8384 aa4.26□□□□□ -1.73
VEGFA-232ENST00000640653 PRM1P04553 51 aa4□□□□□ -1.77
VEGFA-232ENST00000640653 KRTAP21-1Q3LI58 79 aa3.63□□□□□ -1.83
VEGFA-232ENST00000640653 MUC16Q8WXI7 14507 aa3.05□□□□□ -1.92
Retrieved 77 of 20,778 RNA–protein pairs in 11.6 ms