RNA–Protein interactions for RNA: ENST00000616395.4

TRAPPC3-209, Transcript of trafficking protein particle complex 3, humanhuman

TSL 3 BASIC

Gene TRAPPC3, Length 1,336 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC3-209ENST00000616395 KRTAP4-8Q9BYQ9 185 aa7.27□□□□□ -1.25
TRAPPC3-209ENST00000616395 SVIPQ8NHG7 77 aa7.21□□□□□ -1.26
TRAPPC3-209ENST00000616395 KRTAP4-9Q9BYQ8 210 aa7.17□□□□□ -1.26
TRAPPC3-209ENST00000616395 KRTAP25-1Q3LHN0 102 aa7.07□□□□□ -1.28
TRAPPC3-209ENST00000616395 TNP1P09430 55 aa7.05□□□□□ -1.28
TRAPPC3-209ENST00000616395 C10orf95Q9H7T3 257 aa7.04□□□□□ -1.28
TRAPPC3-209ENST00000616395 PRAC1Q96KF2 57 aa7□□□□□ -1.29
TRAPPC3-209ENST00000616395 KRTAP10-7P60409 375 aaPredicted RBP6.98□□□□□ -1.29
TRAPPC3-209ENST00000616395 KRTAP4-12Q9BQ66 201 aa6.97□□□□□ -1.29
TRAPPC3-209ENST00000616395 HMCN1Q96RW7 5635 aa6.93□□□□□ -1.3
TRAPPC3-209ENST00000616395 KRTAP10-12P60413 245 aa6.91□□□□□ -1.3
TRAPPC3-209ENST00000616395 PP632Q6XCG6 107 aa6.91□□□□□ -1.3
TRAPPC3-209ENST00000616395 LCE1DQ5T752 114 aa6.9□□□□□ -1.3
TRAPPC3-209ENST00000616395 AHNAK2Q8IVF2 5795 aa6.88□□□□□ -1.31
TRAPPC3-209ENST00000616395 KRTAP23-1A1A580 65 aa6.84□□□□□ -1.31
TRAPPC3-209ENST00000616395 KRTAP5-10Q6L8G5 202 aa6.77□□□□□ -1.32
TRAPPC3-209ENST00000616395 KRTAP9-9Q9BYP9 154 aa6.76□□□□□ -1.33
TRAPPC3-209ENST00000616395 KRTAP9-4Q9BYQ2 154 aa6.76□□□□□ -1.33
TRAPPC3-209ENST00000616395 MT4P47944 62 aa6.74□□□□□ -1.33
TRAPPC3-209ENST00000616395 LCE5AQ5TCM9 118 aa6.74□□□□□ -1.33
TRAPPC3-209ENST00000616395 LCE4AQ5TA78 99 aa6.64□□□□□ -1.35
TRAPPC3-209ENST00000616395 KRTAP5-7Q6L8G8 165 aa6.61□□□□□ -1.35
TRAPPC3-209ENST00000616395 KRTAP19-3Q7Z4W3 81 aa6.61□□□□□ -1.35
TRAPPC3-209ENST00000616395 LCE3AQ5TA76 89 aa6.56□□□□□ -1.36
TRAPPC3-209ENST00000616395 KRTAP19-7Q3SYF9 63 aa6.55□□□□□ -1.36
TRAPPC3-209ENST00000616395 MT1EP04732 61 aa6.52□□□□□ -1.37
TRAPPC3-209ENST00000616395 KRTAP5-3Q6L8H2 238 aa6.45□□□□□ -1.38
TRAPPC3-209ENST00000616395 SPRR5A0A1B0GTR4 108 aa6.42□□□□□ -1.38
TRAPPC3-209ENST00000616395 KRTAP4-7Q9BYR0 210 aa6.42□□□□□ -1.38
TRAPPC3-209ENST00000616395 KRTAP5-4Q6L8H1 288 aa6.41□□□□□ -1.38
TRAPPC3-209ENST00000616395 KRTAP12-3P60328 96 aa6.37□□□□□ -1.39
TRAPPC3-209ENST00000616395 H3BS24 57 aa6.36□□□□□ -1.39
TRAPPC3-209ENST00000616395 MT1GP13640 62 aa6.36□□□□□ -1.39
TRAPPC3-209ENST00000616395 KRTAP19-4Q3LI73 84 aa6.33□□□□□ -1.4
TRAPPC3-209ENST00000616395 KRTAP19-5Q3LI72 72 aa6.29□□□□□ -1.4
TRAPPC3-209ENST00000616395 KRTAP15-1Q3LI76 137 aa6.26□□□□□ -1.41
TRAPPC3-209ENST00000616395 MT1MQ8N339 61 aa6.26□□□□□ -1.41
TRAPPC3-209ENST00000616395 KRTAP4-3Q9BYR4 195 aa6.19□□□□□ -1.42
TRAPPC3-209ENST00000616395 KRTAP4-2Q9BYR5 136 aa6.14□□□□□ -1.43
TRAPPC3-209ENST00000616395 KRTAP20-2Q3LI61 65 aa6.11□□□□□ -1.43
TRAPPC3-209ENST00000616395 MT1LQ93083 61 aa6.11□□□□□ -1.43
TRAPPC3-209ENST00000616395 KRTAP4-11Q9BYQ6 195 aa6.07□□□□□ -1.44
TRAPPC3-209ENST00000616395 LUZP6Q538Z0 58 aa6□□□□□ -1.45
TRAPPC3-209ENST00000616395 AHNAKQ09666 5890 aaKnown RBP5.95□□□□□ -1.46
TRAPPC3-209ENST00000616395 LCE3CQ5T5A8 94 aa5.94□□□□□ -1.46
TRAPPC3-209ENST00000616395 MUC5ACP98088 5654 aa5.86□□□□□ -1.47
TRAPPC3-209ENST00000616395 KRTAP12-4P60329 112 aa5.83□□□□□ -1.48
TRAPPC3-209ENST00000616395 KRTAP5-5Q701N2 237 aaPredicted RBP5.81□□□□□ -1.48
TRAPPC3-209ENST00000616395 MUC5BQ9HC84 5762 aaPredicted RBP5.74□□□□□ -1.49
TRAPPC3-209ENST00000616395 SYNE1Q8NF91 8797 aaKnown RBP5.72□□□□□ -1.49
TRAPPC3-209ENST00000616395 NDUFAF8A1L188 74 aa5.67□□□□□ -1.5
TRAPPC3-209ENST00000616395 KRTAP5-8O75690 187 aa5.62□□□□□ -1.51
TRAPPC3-209ENST00000616395 KRTAP5-2Q701N4 177 aa5.48□□□□□ -1.53
TRAPPC3-209ENST00000616395 KRTAP9-6A8MVA2 160 aa5.42□□□□□ -1.54
TRAPPC3-209ENST00000616395 OBSCNQ5VST9 7968 aa5.38□□□□□ -1.55
TRAPPC3-209ENST00000616395 KRTAP6-1Q3LI64 71 aa5.22□□□□□ -1.57
TRAPPC3-209ENST00000616395 A0A0A0MQY5 61 aa5.2□□□□□ -1.58
TRAPPC3-209ENST00000616395 MT1AP04731 61 aa5.17□□□□□ -1.58
TRAPPC3-209ENST00000616395 KRTAP6-2Q3LI66 62 aa5.13□□□□□ -1.59
TRAPPC3-209ENST00000616395 KRTAP5-1Q6L8H4 278 aa5.06□□□□□ -1.6
TRAPPC3-209ENST00000616395 INE1O15225 51 aa4.83□□□□□ -1.64
TRAPPC3-209ENST00000616395 MT3P25713 68 aa4.75□□□□□ -1.65
TRAPPC3-209ENST00000616395 LCE1EQ5T753 118 aa4.54□□□□□ -1.68
TRAPPC3-209ENST00000616395 LCE3DQ9BYE3 92 aa4.5□□□□□ -1.69
TRAPPC3-209ENST00000616395 LCE3EQ5T5B0 92 aa4.4□□□□□ -1.71
TRAPPC3-209ENST00000616395 LCE1BQ5T7P3 118 aa4.39□□□□□ -1.71
TRAPPC3-209ENST00000616395 LCE1CQ5T751 118 aa4.22□□□□□ -1.73
TRAPPC3-209ENST00000616395 KRTAP5-11Q6L8G4 156 aa4.08□□□□□ -1.76
TRAPPC3-209ENST00000616395 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.08□□□□□ -1.76
TRAPPC3-209ENST00000616395 PHGR1C9JFL3 82 aa3.98□□□□□ -1.77
TRAPPC3-209ENST00000616395 LCE1FQ5T754 118 aa3.95□□□□□ -1.78
TRAPPC3-209ENST00000616395 PRM1P04553 51 aa3.76□□□□□ -1.81
TRAPPC3-209ENST00000616395 KRTAP21-2Q3LI59 83 aa3.44□□□□□ -1.86
TRAPPC3-209ENST00000616395 KRTAP4-4Q9BYR3 166 aa3.4□□□□□ -1.87
TRAPPC3-209ENST00000616395 MUC19Q7Z5P9 8384 aa3.33□□□□□ -1.88
TRAPPC3-209ENST00000616395 KRTAP21-1Q3LI58 79 aa3.02□□□□□ -1.93
TRAPPC3-209ENST00000616395 MUC16Q8WXI7 14507 aa2.33□□□□□ -2.04
Retrieved 77 of 20,778 RNA–protein pairs in 8.5 ms