RNA–Protein interactions for RNA: ENST00000612946.4

TTC28-208, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TTC28, Length 11,274 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-208ENST00000612946 KRTAP6-2Q3LI66 62 aa2.4□□□□□ -2.03
TTC28-208ENST00000612946 LCE5AQ5TCM9 118 aa2.4□□□□□ -2.03
TTC28-208ENST00000612946 KRTAP19-7Q3SYF9 63 aa2.39□□□□□ -2.03
TTC28-208ENST00000612946 KRTAP9-2Q9BYQ4 174 aa2.37□□□□□ -2.03
TTC28-208ENST00000612946 KRTAP20-1Q3LI63 56 aa2.36□□□□□ -2.03
TTC28-208ENST00000612946 HERC2O95714 4834 aa2.36□□□□□ -2.03
TTC28-208ENST00000612946 KMT2CQ8NEZ4 4911 aaKnown RBP2.35□□□□□ -2.03
TTC28-208ENST00000612946 HYDINQ4G0P3 5121 aa2.33□□□□□ -2.04
TTC28-208ENST00000612946 LOC100996750A0A140TA64 210 aa2.33□□□□□ -2.04
TTC28-208ENST00000612946 LCE1AQ5T7P2 110 aa2.33□□□□□ -2.04
TTC28-208ENST00000612946 KRTAP2-2Q9BYT5 123 aa2.32□□□□□ -2.04
TTC28-208ENST00000612946 KRTAP9-6A0A140TA67 174 aa2.3□□□□□ -2.04
TTC28-208ENST00000612946 LCE1CQ5T751 118 aa2.29□□□□□ -2.04
TTC28-208ENST00000612946 LCE1EQ5T753 118 aa2.29□□□□□ -2.04
TTC28-208ENST00000612946 LCE1FQ5T754 118 aa2.29□□□□□ -2.04
TTC28-208ENST00000612946 KRTAP9-6A8MVA2 160 aa2.27□□□□□ -2.05
TTC28-208ENST00000612946 HERC1Q15751 4861 aa2.27□□□□□ -2.05
TTC28-208ENST00000612946 KRTAP4-3Q9BYR4 195 aa2.26□□□□□ -2.05
TTC28-208ENST00000612946 KIAA1109Q2LD37 5005 aa2.26□□□□□ -2.05
TTC28-208ENST00000612946 KRTAP9-4Q9BYQ2 154 aa2.24□□□□□ -2.05
TTC28-208ENST00000612946 LCE4AQ5TA78 99 aa2.23□□□□□ -2.05
TTC28-208ENST00000612946 KRTAP4-9Q9BYQ8 210 aa2.22□□□□□ -2.05
TTC28-208ENST00000612946 LPAP08519 4548 aa2.22□□□□□ -2.05
TTC28-208ENST00000612946 KRTAP9-7A8MTY7 169 aa2.22□□□□□ -2.05
TTC28-208ENST00000612946 HMCN2Q8NDA2 5059 aa2.21□□□□□ -2.06
TTC28-208ENST00000612946 KRTAP6-1Q3LI64 71 aa2.19□□□□□ -2.06
TTC28-208ENST00000612946 LCE2AQ5TA79 106 aaPredicted RBP2.19□□□□□ -2.06
TTC28-208ENST00000612946 KRTAP6-3Q3LI67 103 aa2.18□□□□□ -2.06
TTC28-208ENST00000612946 EPPK1P58107 5090 aaKnown RBP2.14□□□□□ -2.07
TTC28-208ENST00000612946 SYNE1Q8NF91 8797 aaKnown RBP2.11□□□□□ -2.07
TTC28-208ENST00000612946 SYNE2Q8WXH0 6885 aaKnown RBP2.06□□□□□ -2.08
TTC28-208ENST00000612946 RNF213Q63HN8 5207 aa2.06□□□□□ -2.08
TTC28-208ENST00000612946 KRTAP9-9Q9BYP9 154 aa2.04□□□□□ -2.08
TTC28-208ENST00000612946 ABCA13Q86UQ4 5058 aa2.04□□□□□ -2.08
TTC28-208ENST00000612946 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.01□□□□□ -2.09
TTC28-208ENST00000612946 FSIP2Q5CZC0 6907 aa1.97□□□□□ -2.09
TTC28-208ENST00000612946 UBR4Q5T4S7 5183 aa1.95□□□□□ -2.1
TTC28-208ENST00000612946 FAT4Q6V0I7 4981 aa1.92□□□□□ -2.1
TTC28-208ENST00000612946 MUC12Q9UKN1 5478 aa1.91□□□□□ -2.1
TTC28-208ENST00000612946 MUC2Q02817 5179 aa1.88□□□□□ -2.11
TTC28-208ENST00000612946 KRTAP4-11Q9BYQ6 195 aa1.87□□□□□ -2.11
TTC28-208ENST00000612946 KRTAP5-5Q701N2 237 aaPredicted RBP1.85□□□□□ -2.11
TTC28-208ENST00000612946 OBSCNQ5VST9 7968 aa1.84□□□□□ -2.11
TTC28-208ENST00000612946 KRTAP5-9P26371 169 aa1.82□□□□□ -2.12
TTC28-208ENST00000612946 KRTAP20-2Q3LI61 65 aa1.82□□□□□ -2.12
TTC28-208ENST00000612946 GPR98Q8WXG9 6306 aa1.81□□□□□ -2.12
TTC28-208ENST00000612946 NEBP20929 6669 aa1.81□□□□□ -2.12
TTC28-208ENST00000612946 MDN1Q9NU22 5596 aa1.79□□□□□ -2.12
TTC28-208ENST00000612946 MACF1Q9UPN3 7388 aaKnown RBP1.77□□□□□ -2.13
TTC28-208ENST00000612946 DSTQ03001 7570 aaKnown RBP1.74□□□□□ -2.13
TTC28-208ENST00000612946 USH2AO75445 5202 aa1.73□□□□□ -2.13
TTC28-208ENST00000612946 KRTAP5-4Q6L8H1 288 aa1.69□□□□□ -2.14
TTC28-208ENST00000612946 KRTAP4-4Q9BYR3 166 aa1.69□□□□□ -2.14
TTC28-208ENST00000612946 KMT2DO14686 5537 aa1.68□□□□□ -2.14
TTC28-208ENST00000612946 KRTAP4-12Q9BQ66 201 aa1.67□□□□□ -2.14
TTC28-208ENST00000612946 KRTAP4-2Q9BYR5 136 aa1.67□□□□□ -2.14
TTC28-208ENST00000612946 KRTAP4-6Q9BYQ5 205 aa1.66□□□□□ -2.14
TTC28-208ENST00000612946 FCGBPQ9Y6R7 5405 aaPredicted RBP1.65□□□□□ -2.15
TTC28-208ENST00000612946 SSPOA2VEC9 5147 aa1.59□□□□□ -2.15
TTC28-208ENST00000612946 MUC5ACP98088 5654 aa1.58□□□□□ -2.16
TTC28-208ENST00000612946 HMCN1Q96RW7 5635 aa1.49□□□□□ -2.17
TTC28-208ENST00000612946 KRTAP5-10Q6L8G5 202 aa1.45□□□□□ -2.18
TTC28-208ENST00000612946 KRTAP5-3Q6L8H2 238 aa1.45□□□□□ -2.18
TTC28-208ENST00000612946 AHNAK2Q8IVF2 5795 aa1.45□□□□□ -2.18
TTC28-208ENST00000612946 MUC5BQ9HC84 5762 aaPredicted RBP1.42□□□□□ -2.18
TTC28-208ENST00000612946 MUC19Q7Z5P9 8384 aa1.36□□□□□ -2.19
TTC28-208ENST00000612946 PHGR1C9JFL3 82 aa1.33□□□□□ -2.2
TTC28-208ENST00000612946 KRTAP21-1Q3LI58 79 aa1.32□□□□□ -2.2
TTC28-208ENST00000612946 AHNAKQ09666 5890 aaKnown RBP1.29□□□□□ -2.2
TTC28-208ENST00000612946 KRTAP5-2Q701N4 177 aa1.28□□□□□ -2.21
TTC28-208ENST00000612946 KRTAP5-11Q6L8G4 156 aa1.25□□□□□ -2.21
TTC28-208ENST00000612946 KRTAP5-8O75690 187 aa1.2□□□□□ -2.22
TTC28-208ENST00000612946 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.2□□□□□ -2.22
TTC28-208ENST00000612946 KRTAP5-1Q6L8H4 278 aa1.18□□□□□ -2.22
TTC28-208ENST00000612946 KRTAP21-2Q3LI59 83 aa1.14□□□□□ -2.23
TTC28-208ENST00000612946 KRTAP5-7Q6L8G8 165 aa0.92□□□□□ -2.26
TTC28-208ENST00000612946 MUC16Q8WXI7 14507 aa0.71□□□□□ -2.3
Retrieved 77 of 20,778 RNA–protein pairs in 8.9 ms