RNA–Protein interactions for RNA: ENST00000602011.5

SHKBP1-227, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-227ENST00000602011 UQCR11O14957 56 aa6.48□□□□□ -1.37
SHKBP1-227ENST00000602011 LCE4AQ5TA78 99 aa6.48□□□□□ -1.37
SHKBP1-227ENST00000602011 KRTAP19-5Q3LI72 72 aa6.42□□□□□ -1.38
SHKBP1-227ENST00000602011 SPINT4Q6UDR6 99 aa6.42□□□□□ -1.38
SHKBP1-227ENST00000602011 PRO0628Q9UI54 55 aa6.42□□□□□ -1.38
SHKBP1-227ENST00000602011 PSPHP1O15172 72 aa6.39□□□□□ -1.39
SHKBP1-227ENST00000602011 KRTAP12-1P59990 96 aa6.39□□□□□ -1.39
SHKBP1-227ENST00000602011 A8MU10 97 aa6.38□□□□□ -1.39
SHKBP1-227ENST00000602011 KRTAP5-10Q6L8G5 202 aa6.36□□□□□ -1.39
SHKBP1-227ENST00000602011 MIR22HGQ0VDD5 57 aa6.34□□□□□ -1.39
SHKBP1-227ENST00000602011 MT1MQ8N339 61 aa6.34□□□□□ -1.39
SHKBP1-227ENST00000602011 BRK1Q8WUW1 75 aa6.34□□□□□ -1.39
SHKBP1-227ENST00000602011 MT1LQ93083 61 aa6.3□□□□□ -1.4
SHKBP1-227ENST00000602011 KRTAP4-6Q9BYQ5 205 aa6.28□□□□□ -1.4
SHKBP1-227ENST00000602011 KRTAP5-4Q6L8H1 288 aa6.26□□□□□ -1.41
SHKBP1-227ENST00000602011 KRTAP4-3Q9BYR4 195 aa6.26□□□□□ -1.41
SHKBP1-227ENST00000602011 A6NED7 52 aa6.24□□□□□ -1.41
SHKBP1-227ENST00000602011 K7ERS5 55 aa6.21□□□□□ -1.42
SHKBP1-227ENST00000602011 TNP1P09430 55 aa6.18□□□□□ -1.42
SHKBP1-227ENST00000602011 C10orf95Q9H7T3 257 aa6.15□□□□□ -1.42
SHKBP1-227ENST00000602011 KRTAP5-7Q6L8G8 165 aa6.14□□□□□ -1.43
SHKBP1-227ENST00000602011 LCE3AQ5TA76 89 aa6.11□□□□□ -1.43
SHKBP1-227ENST00000602011 KRTAP5-3Q6L8H2 238 aa6.11□□□□□ -1.43
SHKBP1-227ENST00000602011 CDC42SE1Q9NRR8 79 aa6.06□□□□□ -1.44
SHKBP1-227ENST00000602011 PMAIP1Q13794 54 aa6.05□□□□□ -1.44
SHKBP1-227ENST00000602011 KRTAP4-7Q9BYR0 210 aa5.97□□□□□ -1.45
SHKBP1-227ENST00000602011 SPRR5A0A1B0GTR4 108 aa5.95□□□□□ -1.46
SHKBP1-227ENST00000602011 KRTAP12-3P60328 96 aa5.95□□□□□ -1.46
SHKBP1-227ENST00000602011 KRTAP20-2Q3LI61 65 aa5.94□□□□□ -1.46
SHKBP1-227ENST00000602011 KRTAP25-1Q3LHN0 102 aa5.9□□□□□ -1.46
SHKBP1-227ENST00000602011 KTN1-AS1Q86SY8 53 aa5.88□□□□□ -1.47
SHKBP1-227ENST00000602011 KRTAP12-4P60329 112 aa5.87□□□□□ -1.47
SHKBP1-227ENST00000602011 KRTAP5-5Q701N2 237 aaPredicted RBP5.85□□□□□ -1.47
SHKBP1-227ENST00000602011 KRTAP19-4Q3LI73 84 aa5.82□□□□□ -1.48
SHKBP1-227ENST00000602011 ROMO1P60602 79 aa5.81□□□□□ -1.48
SHKBP1-227ENST00000602011 KRTAP23-1A1A580 65 aa5.76□□□□□ -1.49
SHKBP1-227ENST00000602011 SYNE1Q8NF91 8797 aaKnown RBP5.71□□□□□ -1.5
SHKBP1-227ENST00000602011 LOC100996750A0A140TA64 210 aa5.68□□□□□ -1.5
SHKBP1-227ENST00000602011 KRTAP4-11Q9BYQ6 195 aa5.53□□□□□ -1.52
SHKBP1-227ENST00000602011 KRTAP15-1Q3LI76 137 aa5.48□□□□□ -1.53
SHKBP1-227ENST00000602011 PRAC1Q96KF2 57 aa5.46□□□□□ -1.54
SHKBP1-227ENST00000602011 LCE3CQ5T5A8 94 aa5.45□□□□□ -1.54
SHKBP1-227ENST00000602011 AHNAKQ09666 5890 aaKnown RBP5.44□□□□□ -1.54
SHKBP1-227ENST00000602011 KRTAP5-2Q701N4 177 aa5.42□□□□□ -1.54
SHKBP1-227ENST00000602011 MUC5ACP98088 5654 aa5.4□□□□□ -1.55
SHKBP1-227ENST00000602011 MUC5BQ9HC84 5762 aaPredicted RBP5.38□□□□□ -1.55
SHKBP1-227ENST00000602011 MT1AP04731 61 aa5.38□□□□□ -1.55
SHKBP1-227ENST00000602011 KRTAP5-8O75690 187 aa5.37□□□□□ -1.55
SHKBP1-227ENST00000602011 KRTAP6-1Q3LI64 71 aa5.31□□□□□ -1.56
SHKBP1-227ENST00000602011 KRTAP9-4Q9BYQ2 154 aa5.25□□□□□ -1.57
SHKBP1-227ENST00000602011 OBSCNQ5VST9 7968 aa5.2□□□□□ -1.58
SHKBP1-227ENST00000602011 KRTAP6-2Q3LI66 62 aa5.15□□□□□ -1.59
SHKBP1-227ENST00000602011 KRTAP9-9Q9BYP9 154 aa5.14□□□□□ -1.59
SHKBP1-227ENST00000602011 KRTAP9-6A8MVA2 160 aa5.05□□□□□ -1.6
SHKBP1-227ENST00000602011 MT3P25713 68 aa4.99□□□□□ -1.61
SHKBP1-227ENST00000602011 KRTAP5-1Q6L8H4 278 aa4.93□□□□□ -1.62
SHKBP1-227ENST00000602011 H3BS24 57 aa4.75□□□□□ -1.65
SHKBP1-227ENST00000602011 LCE1EQ5T753 118 aa4.69□□□□□ -1.66
SHKBP1-227ENST00000602011 NDUFAF8A1L188 74 aa4.64□□□□□ -1.67
SHKBP1-227ENST00000602011 LUZP6Q538Z0 58 aa4.64□□□□□ -1.67
SHKBP1-227ENST00000602011 KRTAP4-12Q9BQ66 201 aa4.44□□□□□ -1.7
SHKBP1-227ENST00000602011 LCE1BQ5T7P3 118 aa4.37□□□□□ -1.71
SHKBP1-227ENST00000602011 A0A0A0MQY5 61 aa4.36□□□□□ -1.71
SHKBP1-227ENST00000602011 KRTAP4-2Q9BYR5 136 aa4.36□□□□□ -1.71
SHKBP1-227ENST00000602011 LCE1CQ5T751 118 aa4.33□□□□□ -1.72
SHKBP1-227ENST00000602011 INE1O15225 51 aa3.97□□□□□ -1.77
SHKBP1-227ENST00000602011 LCE1FQ5T754 118 aa3.96□□□□□ -1.78
SHKBP1-227ENST00000602011 KRTAP5-11Q6L8G4 156 aa3.92□□□□□ -1.78
SHKBP1-227ENST00000602011 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.9□□□□□ -1.79
SHKBP1-227ENST00000602011 LCE3DQ9BYE3 92 aa3.9□□□□□ -1.79
SHKBP1-227ENST00000602011 PHGR1C9JFL3 82 aa3.74□□□□□ -1.81
SHKBP1-227ENST00000602011 LCE3EQ5T5B0 92 aa3.7□□□□□ -1.82
SHKBP1-227ENST00000602011 KRTAP21-2Q3LI59 83 aa3.52□□□□□ -1.85
SHKBP1-227ENST00000602011 KRTAP4-4Q9BYR3 166 aa3.35□□□□□ -1.87
SHKBP1-227ENST00000602011 MUC19Q7Z5P9 8384 aa3.25□□□□□ -1.89
SHKBP1-227ENST00000602011 PRM1P04553 51 aa2.95□□□□□ -1.94
SHKBP1-227ENST00000602011 KRTAP21-1Q3LI58 79 aa2.8□□□□□ -1.96
SHKBP1-227ENST00000602011 MUC16Q8WXI7 14507 aa2.29□□□□□ -2.04
Retrieved 78 of 20,778 RNA–protein pairs in 70.3 ms