RNA–Protein interactions for RNA: ENST00000597396.5

SHKBP1-214, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 1,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-214ENST00000597396 KRTAP25-1Q3LHN0 102 aa7.2□□□□□ -1.26
SHKBP1-214ENST00000597396 CDC42SE1Q9NRR8 79 aa7.17□□□□□ -1.26
SHKBP1-214ENST00000597396 KRTAP19-3Q7Z4W3 81 aa7.16□□□□□ -1.26
SHKBP1-214ENST00000597396 SVIPQ8NHG7 77 aa7.13□□□□□ -1.27
SHKBP1-214ENST00000597396 LCE5AQ5TCM9 118 aa7.11□□□□□ -1.27
SHKBP1-214ENST00000597396 MT1GP13640 62 aa7.03□□□□□ -1.28
SHKBP1-214ENST00000597396 MT1LQ93083 61 aa7.02□□□□□ -1.29
SHKBP1-214ENST00000597396 KRTAP12-3P60328 96 aa7.01□□□□□ -1.29
SHKBP1-214ENST00000597396 PP632Q6XCG6 107 aa7□□□□□ -1.29
SHKBP1-214ENST00000597396 ROMO1P60602 79 aa6.99□□□□□ -1.29
SHKBP1-214ENST00000597396 KRTAP23-1A1A580 65 aa6.92□□□□□ -1.3
SHKBP1-214ENST00000597396 MT1MQ8N339 61 aa6.92□□□□□ -1.3
SHKBP1-214ENST00000597396 KRTAP4-9Q9BYQ8 210 aa6.87□□□□□ -1.31
SHKBP1-214ENST00000597396 GPR98Q8WXG9 6306 aa6.85□□□□□ -1.31
SHKBP1-214ENST00000597396 DSTQ03001 7570 aaKnown RBP6.83□□□□□ -1.32
SHKBP1-214ENST00000597396 BRK1Q8WUW1 75 aa6.78□□□□□ -1.32
SHKBP1-214ENST00000597396 KRTAP4-3Q9BYR4 195 aa6.73□□□□□ -1.33
SHKBP1-214ENST00000597396 KRTAP4-7Q9BYR0 210 aa6.69□□□□□ -1.34
SHKBP1-214ENST00000597396 KRTAP15-1Q3LI76 137 aa6.67□□□□□ -1.34
SHKBP1-214ENST00000597396 LCE1DQ5T752 114 aa6.65□□□□□ -1.34
SHKBP1-214ENST00000597396 KRTAP19-4Q3LI73 84 aa6.62□□□□□ -1.35
SHKBP1-214ENST00000597396 MT4P47944 62 aa6.58□□□□□ -1.36
SHKBP1-214ENST00000597396 LCE4AQ5TA78 99 aa6.58□□□□□ -1.36
SHKBP1-214ENST00000597396 HMCN1Q96RW7 5635 aa6.48□□□□□ -1.37
SHKBP1-214ENST00000597396 LCE3CQ5T5A8 94 aa6.48□□□□□ -1.37
SHKBP1-214ENST00000597396 KRTAP5-4Q6L8H1 288 aa6.39□□□□□ -1.39
SHKBP1-214ENST00000597396 PMAIP1Q13794 54 aa6.38□□□□□ -1.39
SHKBP1-214ENST00000597396 KRTAP4-6Q9BYQ5 205 aa6.34□□□□□ -1.39
SHKBP1-214ENST00000597396 AHNAK2Q8IVF2 5795 aa6.32□□□□□ -1.4
SHKBP1-214ENST00000597396 LOC100996750A0A140TA64 210 aa6.32□□□□□ -1.4
SHKBP1-214ENST00000597396 KRTAP5-10Q6L8G5 202 aa6.3□□□□□ -1.4
SHKBP1-214ENST00000597396 KRTAP5-5Q701N2 237 aaPredicted RBP6.28□□□□□ -1.4
SHKBP1-214ENST00000597396 PRO0628Q9UI54 55 aa6.16□□□□□ -1.42
SHKBP1-214ENST00000597396 KRTAP5-3Q6L8H2 238 aa6.1□□□□□ -1.43
SHKBP1-214ENST00000597396 KRTAP9-6A8MVA2 160 aa6.08□□□□□ -1.44
SHKBP1-214ENST00000597396 KRTAP12-4P60329 112 aa6.08□□□□□ -1.44
SHKBP1-214ENST00000597396 KRTAP5-7Q6L8G8 165 aa6.08□□□□□ -1.44
SHKBP1-214ENST00000597396 PRAC1Q96KF2 57 aa6.07□□□□□ -1.44
SHKBP1-214ENST00000597396 KRTAP20-2Q3LI61 65 aa6.06□□□□□ -1.44
SHKBP1-214ENST00000597396 SPRR5A0A1B0GTR4 108 aa6.01□□□□□ -1.45
SHKBP1-214ENST00000597396 SYNE1Q8NF91 8797 aaKnown RBP6□□□□□ -1.45
SHKBP1-214ENST00000597396 MT1AP04731 61 aa5.99□□□□□ -1.45
SHKBP1-214ENST00000597396 H3BS24 57 aa5.93□□□□□ -1.46
SHKBP1-214ENST00000597396 KRTAP6-1Q3LI64 71 aa5.93□□□□□ -1.46
SHKBP1-214ENST00000597396 KTN1-AS1Q86SY8 53 aa5.84□□□□□ -1.47
SHKBP1-214ENST00000597396 KRTAP9-4Q9BYQ2 154 aa5.74□□□□□ -1.49
SHKBP1-214ENST00000597396 KRTAP5-2Q701N4 177 aa5.64□□□□□ -1.51
SHKBP1-214ENST00000597396 KRTAP4-11Q9BYQ6 195 aa5.6□□□□□ -1.51
SHKBP1-214ENST00000597396 KRTAP6-2Q3LI66 62 aa5.59□□□□□ -1.51
SHKBP1-214ENST00000597396 MT3P25713 68 aa5.47□□□□□ -1.53
SHKBP1-214ENST00000597396 A0A0A0MQY5 61 aa5.42□□□□□ -1.54
SHKBP1-214ENST00000597396 KRTAP5-8O75690 187 aa5.41□□□□□ -1.54
SHKBP1-214ENST00000597396 MUC5ACP98088 5654 aa5.27□□□□□ -1.57
SHKBP1-214ENST00000597396 AHNAKQ09666 5890 aaKnown RBP5.26□□□□□ -1.57
SHKBP1-214ENST00000597396 MUC5BQ9HC84 5762 aaPredicted RBP5.24□□□□□ -1.57
SHKBP1-214ENST00000597396 KRTAP9-9Q9BYP9 154 aa5.2□□□□□ -1.58
SHKBP1-214ENST00000597396 OBSCNQ5VST9 7968 aa5.14□□□□□ -1.59
SHKBP1-214ENST00000597396 LUZP6Q538Z0 58 aa5.11□□□□□ -1.59
SHKBP1-214ENST00000597396 KRTAP5-1Q6L8H4 278 aa5.02□□□□□ -1.61
SHKBP1-214ENST00000597396 LCE1EQ5T753 118 aa4.91□□□□□ -1.62
SHKBP1-214ENST00000597396 LCE3DQ9BYE3 92 aa4.75□□□□□ -1.65
SHKBP1-214ENST00000597396 LCE1BQ5T7P3 118 aa4.64□□□□□ -1.67
SHKBP1-214ENST00000597396 KRTAP4-2Q9BYR5 136 aa4.61□□□□□ -1.67
SHKBP1-214ENST00000597396 LCE1CQ5T751 118 aa4.55□□□□□ -1.68
SHKBP1-214ENST00000597396 LCE3EQ5T5B0 92 aa4.53□□□□□ -1.68
SHKBP1-214ENST00000597396 NDUFAF8A1L188 74 aa4.38□□□□□ -1.71
SHKBP1-214ENST00000597396 KRTAP4-12Q9BQ66 201 aa4.2□□□□□ -1.74
SHKBP1-214ENST00000597396 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.18□□□□□ -1.74
SHKBP1-214ENST00000597396 KRTAP5-11Q6L8G4 156 aa4.1□□□□□ -1.75
SHKBP1-214ENST00000597396 LCE1FQ5T754 118 aa3.94□□□□□ -1.78
SHKBP1-214ENST00000597396 KRTAP21-2Q3LI59 83 aa3.88□□□□□ -1.79
SHKBP1-214ENST00000597396 PHGR1C9JFL3 82 aa3.71□□□□□ -1.82
SHKBP1-214ENST00000597396 PRM1P04553 51 aa3.6□□□□□ -1.83
SHKBP1-214ENST00000597396 INE1O15225 51 aa3.58□□□□□ -1.84
SHKBP1-214ENST00000597396 KRTAP4-4Q9BYR3 166 aa3.54□□□□□ -1.84
SHKBP1-214ENST00000597396 MUC19Q7Z5P9 8384 aa3.2□□□□□ -1.9
SHKBP1-214ENST00000597396 KRTAP21-1Q3LI58 79 aa2.81□□□□□ -1.96
SHKBP1-214ENST00000597396 MUC16Q8WXI7 14507 aa2.32□□□□□ -2.04
Retrieved 78 of 20,778 RNA–protein pairs in 156.9 ms