RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 KRTAP10-7P60409 375 aaPredicted RBP3.77□□□□□ -1.81
TRIM28-208ENST00000597172 KRTAP5-7Q6L8G8 165 aa3.77□□□□□ -1.81
TRIM28-208ENST00000597172 SPRR5A0A1B0GTR4 108 aa3.76□□□□□ -1.81
TRIM28-208ENST00000597172 KRTAP10-12P60413 245 aa3.73□□□□□ -1.81
TRIM28-208ENST00000597172 LCE1DQ5T752 114 aa3.73□□□□□ -1.81
TRIM28-208ENST00000597172 KRTAP4-8A0A0G2JLE6 195 aa3.67□□□□□ -1.82
TRIM28-208ENST00000597172 TNP1P09430 55 aa3.67□□□□□ -1.82
TRIM28-208ENST00000597172 ROMO1P60602 79 aa3.67□□□□□ -1.82
TRIM28-208ENST00000597172 KRTAP4-8Q9BYQ9 185 aa3.67□□□□□ -1.82
TRIM28-208ENST00000597172 PRO0628Q9UI54 55 aa3.64□□□□□ -1.83
TRIM28-208ENST00000597172 KRTAP25-1Q3LHN0 102 aa3.63□□□□□ -1.83
TRIM28-208ENST00000597172 MT4P47944 62 aa3.61□□□□□ -1.83
TRIM28-208ENST00000597172 PMAIP1Q13794 54 aa3.61□□□□□ -1.83
TRIM28-208ENST00000597172 LOC100996750A0A140TA64 210 aa3.6□□□□□ -1.83
TRIM28-208ENST00000597172 KRTAP4-6Q9BYQ5 205 aa3.6□□□□□ -1.83
TRIM28-208ENST00000597172 LCE3AQ5TA76 89 aa3.58□□□□□ -1.84
TRIM28-208ENST00000597172 KRTAP5-3Q6L8H2 238 aa3.57□□□□□ -1.84
TRIM28-208ENST00000597172 AHNAKQ09666 5890 aaKnown RBP3.56□□□□□ -1.84
TRIM28-208ENST00000597172 KRTAP23-1A1A580 65 aa3.53□□□□□ -1.84
TRIM28-208ENST00000597172 LCE4AQ5TA78 99 aa3.53□□□□□ -1.84
TRIM28-208ENST00000597172 KRTAP19-7Q3SYF9 63 aa3.52□□□□□ -1.85
TRIM28-208ENST00000597172 KRTAP19-5Q3LI72 72 aa3.5□□□□□ -1.85
TRIM28-208ENST00000597172 PP632Q6XCG6 107 aa3.46□□□□□ -1.86
TRIM28-208ENST00000597172 MT1EP04732 61 aa3.45□□□□□ -1.86
TRIM28-208ENST00000597172 KRTAP12-3P60328 96 aa3.44□□□□□ -1.86
TRIM28-208ENST00000597172 PRAC1Q96KF2 57 aa3.43□□□□□ -1.86
TRIM28-208ENST00000597172 MUC5ACP98088 5654 aa3.39□□□□□ -1.87
TRIM28-208ENST00000597172 LCE5AQ5TCM9 118 aa3.39□□□□□ -1.87
TRIM28-208ENST00000597172 KTN1-AS1Q86SY8 53 aa3.39□□□□□ -1.87
TRIM28-208ENST00000597172 MUC5BQ9HC84 5762 aaPredicted RBP3.37□□□□□ -1.87
TRIM28-208ENST00000597172 MT1LQ93083 61 aa3.36□□□□□ -1.87
TRIM28-208ENST00000597172 KRTAP19-3Q7Z4W3 81 aa3.35□□□□□ -1.87
TRIM28-208ENST00000597172 KRTAP15-1Q3LI76 137 aa3.33□□□□□ -1.88
TRIM28-208ENST00000597172 KRTAP5-4Q6L8H1 288 aa3.33□□□□□ -1.88
TRIM28-208ENST00000597172 MT1GP13640 62 aa3.3□□□□□ -1.88
TRIM28-208ENST00000597172 MT1MQ8N339 61 aa3.26□□□□□ -1.89
TRIM28-208ENST00000597172 KRTAP4-7Q9BYR0 210 aa3.25□□□□□ -1.89
TRIM28-208ENST00000597172 KRTAP19-4Q3LI73 84 aa3.23□□□□□ -1.89
TRIM28-208ENST00000597172 LCE3CQ5T5A8 94 aa3.21□□□□□ -1.9
TRIM28-208ENST00000597172 KRTAP4-3Q9BYR4 195 aa3.21□□□□□ -1.9
TRIM28-208ENST00000597172 KRTAP20-2Q3LI61 65 aa3.19□□□□□ -1.9
TRIM28-208ENST00000597172 KRTAP4-11Q9BYQ6 195 aa3.11□□□□□ -1.91
TRIM28-208ENST00000597172 KRTAP5-8O75690 187 aa3.07□□□□□ -1.92
TRIM28-208ENST00000597172 KRTAP9-6A8MVA2 160 aa3.06□□□□□ -1.92
TRIM28-208ENST00000597172 KRTAP4-12Q9BQ66 201 aa3.06□□□□□ -1.92
TRIM28-208ENST00000597172 KRTAP12-4P60329 112 aa3.01□□□□□ -1.93
TRIM28-208ENST00000597172 KRTAP9-9Q9BYP9 154 aa3.01□□□□□ -1.93
TRIM28-208ENST00000597172 KRTAP9-4Q9BYQ2 154 aa3.01□□□□□ -1.93
TRIM28-208ENST00000597172 SYNE1Q8NF91 8797 aaKnown RBP2.99□□□□□ -1.93
TRIM28-208ENST00000597172 KRTAP5-5Q701N2 237 aaPredicted RBP2.97□□□□□ -1.93
TRIM28-208ENST00000597172 KRTAP5-2Q701N4 177 aa2.88□□□□□ -1.95
TRIM28-208ENST00000597172 OBSCNQ5VST9 7968 aa2.88□□□□□ -1.95
TRIM28-208ENST00000597172 MT1AP04731 61 aa2.85□□□□□ -1.95
TRIM28-208ENST00000597172 KRTAP6-1Q3LI64 71 aa2.84□□□□□ -1.95
TRIM28-208ENST00000597172 KRTAP4-2Q9BYR5 136 aa2.79□□□□□ -1.96
TRIM28-208ENST00000597172 LUZP6Q538Z0 58 aa2.76□□□□□ -1.97
TRIM28-208ENST00000597172 H3BS24 57 aa2.66□□□□□ -1.98
TRIM28-208ENST00000597172 KRTAP6-2Q3LI66 62 aa2.64□□□□□ -1.99
TRIM28-208ENST00000597172 KRTAP5-1Q6L8H4 278 aa2.64□□□□□ -1.99
TRIM28-208ENST00000597172 NDUFAF8A1L188 74 aa2.6□□□□□ -1.99
TRIM28-208ENST00000597172 MT3P25713 68 aa2.59□□□□□ -1.99
TRIM28-208ENST00000597172 LCE3DQ9BYE3 92 aa2.37□□□□□ -2.03
TRIM28-208ENST00000597172 LCE3EQ5T5B0 92 aa2.29□□□□□ -2.04
TRIM28-208ENST00000597172 LCE1EQ5T753 118 aa2.29□□□□□ -2.04
TRIM28-208ENST00000597172 PHGR1C9JFL3 82 aa2.27□□□□□ -2.05
TRIM28-208ENST00000597172 LCE1BQ5T7P3 118 aa2.22□□□□□ -2.05
TRIM28-208ENST00000597172 A0A0A0MQY5 61 aa2.2□□□□□ -2.06
TRIM28-208ENST00000597172 KRTAP5-11Q6L8G4 156 aa2.17□□□□□ -2.06
TRIM28-208ENST00000597172 INE1O15225 51 aa2.13□□□□□ -2.07
TRIM28-208ENST00000597172 LCE1CQ5T751 118 aa2.13□□□□□ -2.07
TRIM28-208ENST00000597172 LCE1FQ5T754 118 aa2.09□□□□□ -2.07
TRIM28-208ENST00000597172 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.99□□□□□ -2.09
TRIM28-208ENST00000597172 PRM1P04553 51 aa1.92□□□□□ -2.1
TRIM28-208ENST00000597172 KRTAP21-2Q3LI59 83 aa1.87□□□□□ -2.11
TRIM28-208ENST00000597172 MUC19Q7Z5P9 8384 aa1.86□□□□□ -2.11
TRIM28-208ENST00000597172 KRTAP21-1Q3LI58 79 aa1.74□□□□□ -2.13
TRIM28-208ENST00000597172 KRTAP4-4Q9BYR3 166 aa1.67□□□□□ -2.14
TRIM28-208ENST00000597172 MUC16Q8WXI7 14507 aa1.25□□□□□ -2.21
Retrieved 78 of 20,778 RNA–protein pairs in 13.4 ms