RNA–Protein interactions for RNA: ENST00000594298.5

SHKBP1-203, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 716 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-203ENST00000594298 K7ERS5 55 aa6.45□□□□□ -1.38
SHKBP1-203ENST00000594298 LCE1DQ5T752 114 aa6.41□□□□□ -1.38
SHKBP1-203ENST00000594298 RPS28P62857 69 aaKnown RBP6.4□□□□□ -1.38
SHKBP1-203ENST00000594298 MT1GP13640 62 aa6.38□□□□□ -1.39
SHKBP1-203ENST00000594298 KRTAP19-5Q3LI72 72 aa6.37□□□□□ -1.39
SHKBP1-203ENST00000594298 LCE4AQ5TA78 99 aa6.33□□□□□ -1.4
SHKBP1-203ENST00000594298 A6NED7 52 aa6.32□□□□□ -1.4
SHKBP1-203ENST00000594298 LCE3AQ5TA76 89 aa6.32□□□□□ -1.4
SHKBP1-203ENST00000594298 PP632Q6XCG6 107 aa6.32□□□□□ -1.4
SHKBP1-203ENST00000594298 HMCN1Q96RW7 5635 aa6.3□□□□□ -1.4
SHKBP1-203ENST00000594298 MT4P47944 62 aa6.28□□□□□ -1.4
SHKBP1-203ENST00000594298 KRTAP25-1Q3LHN0 102 aa6.25□□□□□ -1.41
SHKBP1-203ENST00000594298 MT1MQ8N339 61 aa6.25□□□□□ -1.41
SHKBP1-203ENST00000594298 MT1LQ93083 61 aa6.2□□□□□ -1.42
SHKBP1-203ENST00000594298 KRTAP5-4Q6L8H1 288 aa6.18□□□□□ -1.42
SHKBP1-203ENST00000594298 AHNAK2Q8IVF2 5795 aa6.17□□□□□ -1.42
SHKBP1-203ENST00000594298 KRTAP5-10Q6L8G5 202 aa6.13□□□□□ -1.43
SHKBP1-203ENST00000594298 KRTAP12-3P60328 96 aa6.12□□□□□ -1.43
SHKBP1-203ENST00000594298 KRTAP4-3Q9BYR4 195 aa6.09□□□□□ -1.43
SHKBP1-203ENST00000594298 KRTAP4-6Q9BYQ5 205 aa6.08□□□□□ -1.44
SHKBP1-203ENST00000594298 CDC42SE1Q9NRR8 79 aa6.08□□□□□ -1.44
SHKBP1-203ENST00000594298 KRTAP23-1A1A580 65 aa6.04□□□□□ -1.44
SHKBP1-203ENST00000594298 ROMO1P60602 79 aa5.99□□□□□ -1.45
SHKBP1-203ENST00000594298 KRTAP5-7Q6L8G8 165 aa5.95□□□□□ -1.46
SHKBP1-203ENST00000594298 KRTAP5-3Q6L8H2 238 aa5.91□□□□□ -1.46
SHKBP1-203ENST00000594298 KRTAP19-4Q3LI73 84 aa5.89□□□□□ -1.47
SHKBP1-203ENST00000594298 KRTAP4-7Q9BYR0 210 aa5.85□□□□□ -1.47
SHKBP1-203ENST00000594298 KRTAP20-2Q3LI61 65 aa5.83□□□□□ -1.48
SHKBP1-203ENST00000594298 KRTAP15-1Q3LI76 137 aa5.8□□□□□ -1.48
SHKBP1-203ENST00000594298 SPRR5A0A1B0GTR4 108 aa5.79□□□□□ -1.48
SHKBP1-203ENST00000594298 KRTAP5-5Q701N2 237 aaPredicted RBP5.79□□□□□ -1.48
SHKBP1-203ENST00000594298 KRTAP12-4P60329 112 aa5.7□□□□□ -1.5
SHKBP1-203ENST00000594298 LCE3CQ5T5A8 94 aa5.66□□□□□ -1.5
SHKBP1-203ENST00000594298 BRK1Q8WUW1 75 aa5.64□□□□□ -1.51
SHKBP1-203ENST00000594298 SYNE1Q8NF91 8797 aaKnown RBP5.59□□□□□ -1.51
SHKBP1-203ENST00000594298 LOC100996750A0A140TA64 210 aa5.56□□□□□ -1.52
SHKBP1-203ENST00000594298 SVIPQ8NHG7 77 aa5.54□□□□□ -1.52
SHKBP1-203ENST00000594298 KRTAP4-11Q9BYQ6 195 aa5.41□□□□□ -1.54
SHKBP1-203ENST00000594298 KRTAP5-2Q701N4 177 aa5.36□□□□□ -1.55
SHKBP1-203ENST00000594298 PMAIP1Q13794 54 aa5.33□□□□□ -1.56
SHKBP1-203ENST00000594298 MT1AP04731 61 aa5.27□□□□□ -1.57
SHKBP1-203ENST00000594298 KRTAP9-6A8MVA2 160 aa5.25□□□□□ -1.57
SHKBP1-203ENST00000594298 KRTAP6-1Q3LI64 71 aa5.25□□□□□ -1.57
SHKBP1-203ENST00000594298 KRTAP5-8O75690 187 aa5.24□□□□□ -1.57
SHKBP1-203ENST00000594298 MUC5ACP98088 5654 aa5.17□□□□□ -1.58
SHKBP1-203ENST00000594298 AHNAKQ09666 5890 aaKnown RBP5.16□□□□□ -1.58
SHKBP1-203ENST00000594298 KRTAP9-4Q9BYQ2 154 aa5.14□□□□□ -1.59
SHKBP1-203ENST00000594298 OBSCNQ5VST9 7968 aa5.11□□□□□ -1.59
SHKBP1-203ENST00000594298 MUC5BQ9HC84 5762 aaPredicted RBP5.11□□□□□ -1.59
SHKBP1-203ENST00000594298 KRTAP6-2Q3LI66 62 aa5.08□□□□□ -1.6
SHKBP1-203ENST00000594298 PRO0628Q9UI54 55 aa5.08□□□□□ -1.6
SHKBP1-203ENST00000594298 PRAC1Q96KF2 57 aa5.01□□□□□ -1.61
SHKBP1-203ENST00000594298 KRTAP9-9Q9BYP9 154 aa5.01□□□□□ -1.61
SHKBP1-203ENST00000594298 KRTAP5-1Q6L8H4 278 aa4.86□□□□□ -1.63
SHKBP1-203ENST00000594298 MT3P25713 68 aa4.84□□□□□ -1.63
SHKBP1-203ENST00000594298 KTN1-AS1Q86SY8 53 aa4.81□□□□□ -1.64
SHKBP1-203ENST00000594298 LCE1EQ5T753 118 aa4.55□□□□□ -1.68
SHKBP1-203ENST00000594298 LUZP6Q538Z0 58 aa4.33□□□□□ -1.72
SHKBP1-203ENST00000594298 KRTAP4-2Q9BYR5 136 aa4.31□□□□□ -1.72
SHKBP1-203ENST00000594298 LCE1BQ5T7P3 118 aa4.25□□□□□ -1.73
SHKBP1-203ENST00000594298 LCE1CQ5T751 118 aa4.22□□□□□ -1.73
SHKBP1-203ENST00000594298 LCE3DQ9BYE3 92 aa4.14□□□□□ -1.75
SHKBP1-203ENST00000594298 KRTAP4-12Q9BQ66 201 aa3.98□□□□□ -1.77
SHKBP1-203ENST00000594298 LCE3EQ5T5B0 92 aa3.93□□□□□ -1.78
SHKBP1-203ENST00000594298 H3BS24 57 aa3.86□□□□□ -1.79
SHKBP1-203ENST00000594298 KRTAP5-11Q6L8G4 156 aa3.85□□□□□ -1.79
SHKBP1-203ENST00000594298 LCE1FQ5T754 118 aa3.83□□□□□ -1.8
SHKBP1-203ENST00000594298 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.81□□□□□ -1.8
SHKBP1-203ENST00000594298 A0A0A0MQY5 61 aa3.68□□□□□ -1.82
SHKBP1-203ENST00000594298 NDUFAF8A1L188 74 aa3.57□□□□□ -1.84
SHKBP1-203ENST00000594298 PHGR1C9JFL3 82 aa3.57□□□□□ -1.84
SHKBP1-203ENST00000594298 KRTAP21-2Q3LI59 83 aa3.47□□□□□ -1.85
SHKBP1-203ENST00000594298 KRTAP4-4Q9BYR3 166 aa3.19□□□□□ -1.9
SHKBP1-203ENST00000594298 MUC19Q7Z5P9 8384 aa3.15□□□□□ -1.91
SHKBP1-203ENST00000594298 PRM1P04553 51 aa3.03□□□□□ -1.92
SHKBP1-203ENST00000594298 INE1O15225 51 aa2.96□□□□□ -1.94
SHKBP1-203ENST00000594298 KRTAP21-1Q3LI58 79 aa2.73□□□□□ -1.97
SHKBP1-203ENST00000594298 MUC16Q8WXI7 14507 aa2.21□□□□□ -2.06
Retrieved 78 of 20,778 RNA–protein pairs in 67.5 ms