RNA–Protein interactions for RNA: ENST00000593008.1

DDX39A-220, Transcript of DExD-box helicase 39A, humanhuman

TSL 3

Gene DDX39A, Length 538 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-220ENST00000593008 ROMO1P60602 79 aa3.62□□□□□ -1.83
DDX39A-220ENST00000593008 KRTAP19-7Q3SYF9 63 aa3.62□□□□□ -1.83
DDX39A-220ENST00000593008 KRTAP19-5Q3LI72 72 aa3.61□□□□□ -1.83
DDX39A-220ENST00000593008 KRTAP23-1A1A580 65 aa3.58□□□□□ -1.84
DDX39A-220ENST00000593008 MT1EP04732 61 aa3.57□□□□□ -1.84
DDX39A-220ENST00000593008 LCE3BQ5TA77 95 aa3.53□□□□□ -1.84
DDX39A-220ENST00000593008 PP632Q6XCG6 107 aa3.53□□□□□ -1.84
DDX39A-220ENST00000593008 KRTAP12-3P60328 96 aa3.48□□□□□ -1.85
DDX39A-220ENST00000593008 KRTAP19-4Q3LI73 84 aa3.48□□□□□ -1.85
DDX39A-220ENST00000593008 LCE5AQ5TCM9 118 aa3.47□□□□□ -1.85
DDX39A-220ENST00000593008 KRTAP19-3Q7Z4W3 81 aa3.47□□□□□ -1.85
DDX39A-220ENST00000593008 PMAIP1Q13794 54 aa3.46□□□□□ -1.86
DDX39A-220ENST00000593008 MT1LQ93083 61 aa3.45□□□□□ -1.86
DDX39A-220ENST00000593008 PRO0628Q9UI54 55 aa3.45□□□□□ -1.86
DDX39A-220ENST00000593008 DSTQ03001 7570 aaKnown RBP3.44□□□□□ -1.86
DDX39A-220ENST00000593008 MT1GP13640 62 aa3.42□□□□□ -1.86
DDX39A-220ENST00000593008 PRAC1Q96KF2 57 aa3.41□□□□□ -1.86
DDX39A-220ENST00000593008 KRTAP4-7Q9BYR0 210 aa3.39□□□□□ -1.87
DDX39A-220ENST00000593008 MT1MQ8N339 61 aa3.38□□□□□ -1.87
DDX39A-220ENST00000593008 KRTAP4-3Q9BYR4 195 aa3.38□□□□□ -1.87
DDX39A-220ENST00000593008 KRTAP15-1Q3LI76 137 aa3.32□□□□□ -1.88
DDX39A-220ENST00000593008 KRTAP4-9Q9BYQ8 210 aa3.31□□□□□ -1.88
DDX39A-220ENST00000593008 KTN1-AS1Q86SY8 53 aa3.25□□□□□ -1.89
DDX39A-220ENST00000593008 LCE3CQ5T5A8 94 aa3.23□□□□□ -1.89
DDX39A-220ENST00000593008 LCE1DQ5T752 114 aa3.21□□□□□ -1.9
DDX39A-220ENST00000593008 MT4P47944 62 aa3.2□□□□□ -1.9
DDX39A-220ENST00000593008 LCE4AQ5TA78 99 aa3.2□□□□□ -1.9
DDX39A-220ENST00000593008 LOC100996750A0A140TA64 210 aa3.19□□□□□ -1.9
DDX39A-220ENST00000593008 HMCN1Q96RW7 5635 aa3.17□□□□□ -1.9
DDX39A-220ENST00000593008 KRTAP9-6A8MVA2 160 aa3.14□□□□□ -1.91
DDX39A-220ENST00000593008 KRTAP5-4Q6L8H1 288 aa3.14□□□□□ -1.91
DDX39A-220ENST00000593008 SVIPQ8NHG7 77 aa3.12□□□□□ -1.91
DDX39A-220ENST00000593008 KRTAP4-6Q9BYQ5 205 aa3.11□□□□□ -1.91
DDX39A-220ENST00000593008 AHNAK2Q8IVF2 5795 aa3.11□□□□□ -1.91
DDX39A-220ENST00000593008 SYNE1Q8NF91 8797 aaKnown RBP3.1□□□□□ -1.91
DDX39A-220ENST00000593008 KRTAP5-10Q6L8G5 202 aa3.1□□□□□ -1.91
DDX39A-220ENST00000593008 KRTAP5-5Q701N2 237 aaPredicted RBP3.07□□□□□ -1.92
DDX39A-220ENST00000593008 KRTAP5-7Q6L8G8 165 aa3.03□□□□□ -1.92
DDX39A-220ENST00000593008 SPRR5A0A1B0GTR4 108 aa3.02□□□□□ -1.93
DDX39A-220ENST00000593008 KRTAP12-4P60329 112 aa2.99□□□□□ -1.93
DDX39A-220ENST00000593008 KRTAP20-2Q3LI61 65 aa2.98□□□□□ -1.93
DDX39A-220ENST00000593008 KRTAP5-3Q6L8H2 238 aa2.98□□□□□ -1.93
DDX39A-220ENST00000593008 KRTAP6-1Q3LI64 71 aa2.94□□□□□ -1.94
DDX39A-220ENST00000593008 MT1AP04731 61 aa2.92□□□□□ -1.94
DDX39A-220ENST00000593008 LUZP6Q538Z0 58 aa2.82□□□□□ -1.96
DDX39A-220ENST00000593008 AHNAKQ09666 5890 aaKnown RBP2.8□□□□□ -1.96
DDX39A-220ENST00000593008 KRTAP9-4Q9BYQ2 154 aa2.77□□□□□ -1.97
DDX39A-220ENST00000593008 KRTAP5-2Q701N4 177 aa2.76□□□□□ -1.97
DDX39A-220ENST00000593008 KRTAP6-2Q3LI66 62 aa2.74□□□□□ -1.97
DDX39A-220ENST00000593008 KRTAP4-11Q9BYQ6 195 aa2.72□□□□□ -1.97
DDX39A-220ENST00000593008 MUC5BQ9HC84 5762 aaPredicted RBP2.7□□□□□ -1.98
DDX39A-220ENST00000593008 MT3P25713 68 aa2.69□□□□□ -1.98
DDX39A-220ENST00000593008 MUC5ACP98088 5654 aa2.67□□□□□ -1.98
DDX39A-220ENST00000593008 OBSCNQ5VST9 7968 aa2.63□□□□□ -1.99
DDX39A-220ENST00000593008 KRTAP5-8O75690 187 aa2.61□□□□□ -1.99
DDX39A-220ENST00000593008 KRTAP9-9Q9BYP9 154 aa2.56□□□□□ -2
DDX39A-220ENST00000593008 NDUFAF8A1L188 74 aa2.51□□□□□ -2.01
DDX39A-220ENST00000593008 KRTAP5-1Q6L8H4 278 aa2.47□□□□□ -2.01
DDX39A-220ENST00000593008 LCE1EQ5T753 118 aa2.42□□□□□ -2.02
DDX39A-220ENST00000593008 LCE3DQ9BYE3 92 aa2.38□□□□□ -2.03
DDX39A-220ENST00000593008 LCE3EQ5T5B0 92 aa2.29□□□□□ -2.04
DDX39A-220ENST00000593008 LCE1BQ5T7P3 118 aa2.29□□□□□ -2.04
DDX39A-220ENST00000593008 KRTAP4-2Q9BYR5 136 aa2.25□□□□□ -2.05
DDX39A-220ENST00000593008 LCE1CQ5T751 118 aa2.21□□□□□ -2.06
DDX39A-220ENST00000593008 A0A0A0MQY5 61 aa2.16□□□□□ -2.06
DDX39A-220ENST00000593008 KRTAP4-12Q9BQ66 201 aa2.07□□□□□ -2.08
DDX39A-220ENST00000593008 INE1O15225 51 aa2.06□□□□□ -2.08
DDX39A-220ENST00000593008 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.02□□□□□ -2.09
DDX39A-220ENST00000593008 KRTAP5-11Q6L8G4 156 aa1.98□□□□□ -2.09
DDX39A-220ENST00000593008 LCE1FQ5T754 118 aa1.97□□□□□ -2.09
DDX39A-220ENST00000593008 H3BS24 57 aa1.95□□□□□ -2.1
DDX39A-220ENST00000593008 PRM1P04553 51 aa1.92□□□□□ -2.1
DDX39A-220ENST00000593008 KRTAP21-2Q3LI59 83 aa1.92□□□□□ -2.1
DDX39A-220ENST00000593008 PHGR1C9JFL3 82 aa1.82□□□□□ -2.12
DDX39A-220ENST00000593008 KRTAP4-4Q9BYR3 166 aa1.79□□□□□ -2.12
DDX39A-220ENST00000593008 MUC19Q7Z5P9 8384 aa1.61□□□□□ -2.15
DDX39A-220ENST00000593008 KRTAP21-1Q3LI58 79 aa1.42□□□□□ -2.18
DDX39A-220ENST00000593008 MUC16Q8WXI7 14507 aa1.15□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 56 ms