RNA–Protein interactions for RNA: ENST00000591849.5

BRCA1-227, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 563 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-227ENST00000591849 KRTAP19-5Q3LI72 72 aa3.72□□□□□ -1.81
BRCA1-227ENST00000591849 PMAIP1Q13794 54 aa3.71□□□□□ -1.82
BRCA1-227ENST00000591849 LCE3AQ5TA76 89 aa3.69□□□□□ -1.82
BRCA1-227ENST00000591849 KRTAP19-3Q7Z4W3 81 aa3.69□□□□□ -1.82
BRCA1-227ENST00000591849 GPR98Q8WXG9 6306 aa3.67□□□□□ -1.82
BRCA1-227ENST00000591849 LCE5AQ5TCM9 118 aa3.66□□□□□ -1.82
BRCA1-227ENST00000591849 PP632Q6XCG6 107 aa3.64□□□□□ -1.83
BRCA1-227ENST00000591849 MT1GP13640 62 aa3.63□□□□□ -1.83
BRCA1-227ENST00000591849 DSTQ03001 7570 aaKnown RBP3.62□□□□□ -1.83
BRCA1-227ENST00000591849 ROMO1P60602 79 aa3.61□□□□□ -1.83
BRCA1-227ENST00000591849 KRTAP25-1Q3LHN0 102 aa3.61□□□□□ -1.83
BRCA1-227ENST00000591849 MT1LQ93083 61 aa3.58□□□□□ -1.84
BRCA1-227ENST00000591849 KRTAP12-3P60328 96 aa3.57□□□□□ -1.84
BRCA1-227ENST00000591849 KTN1-AS1Q86SY8 53 aa3.57□□□□□ -1.84
BRCA1-227ENST00000591849 MT1MQ8N339 61 aa3.54□□□□□ -1.84
BRCA1-227ENST00000591849 KRTAP4-9Q9BYQ8 210 aa3.53□□□□□ -1.84
BRCA1-227ENST00000591849 LCE1DQ5T752 114 aa3.47□□□□□ -1.85
BRCA1-227ENST00000591849 KRTAP4-3Q9BYR4 195 aa3.46□□□□□ -1.86
BRCA1-227ENST00000591849 KRTAP23-1A1A580 65 aa3.45□□□□□ -1.86
BRCA1-227ENST00000591849 LCE4AQ5TA78 99 aa3.45□□□□□ -1.86
BRCA1-227ENST00000591849 HMCN1Q96RW7 5635 aa3.44□□□□□ -1.86
BRCA1-227ENST00000591849 SVIPQ8NHG7 77 aa3.43□□□□□ -1.86
BRCA1-227ENST00000591849 KRTAP4-7Q9BYR0 210 aa3.41□□□□□ -1.86
BRCA1-227ENST00000591849 MT4P47944 62 aa3.39□□□□□ -1.87
BRCA1-227ENST00000591849 PRAC1Q96KF2 57 aa3.39□□□□□ -1.87
BRCA1-227ENST00000591849 AHNAK2Q8IVF2 5795 aa3.38□□□□□ -1.87
BRCA1-227ENST00000591849 KRTAP15-1Q3LI76 137 aa3.37□□□□□ -1.87
BRCA1-227ENST00000591849 KRTAP19-4Q3LI73 84 aa3.36□□□□□ -1.87
BRCA1-227ENST00000591849 KRTAP5-10Q6L8G5 202 aa3.33□□□□□ -1.88
BRCA1-227ENST00000591849 KRTAP5-4Q6L8H1 288 aa3.33□□□□□ -1.88
BRCA1-227ENST00000591849 LCE3CQ5T5A8 94 aa3.28□□□□□ -1.88
BRCA1-227ENST00000591849 KRTAP4-6Q9BYQ5 205 aa3.26□□□□□ -1.89
BRCA1-227ENST00000591849 KRTAP5-7Q6L8G8 165 aa3.24□□□□□ -1.89
BRCA1-227ENST00000591849 LOC100996750A0A140TA64 210 aa3.23□□□□□ -1.89
BRCA1-227ENST00000591849 KRTAP12-4P60329 112 aa3.2□□□□□ -1.9
BRCA1-227ENST00000591849 KRTAP5-3Q6L8H2 238 aa3.2□□□□□ -1.9
BRCA1-227ENST00000591849 KRTAP5-5Q701N2 237 aaPredicted RBP3.19□□□□□ -1.9
BRCA1-227ENST00000591849 KRTAP20-2Q3LI61 65 aa3.15□□□□□ -1.91
BRCA1-227ENST00000591849 SPRR5A0A1B0GTR4 108 aa3.14□□□□□ -1.91
BRCA1-227ENST00000591849 SYNE1Q8NF91 8797 aaKnown RBP3.11□□□□□ -1.91
BRCA1-227ENST00000591849 MT1AP04731 61 aa3.06□□□□□ -1.92
BRCA1-227ENST00000591849 KRTAP9-6A8MVA2 160 aa3.03□□□□□ -1.92
BRCA1-227ENST00000591849 KRTAP6-1Q3LI64 71 aa3.02□□□□□ -1.93
BRCA1-227ENST00000591849 KRTAP9-4Q9BYQ2 154 aa2.95□□□□□ -1.94
BRCA1-227ENST00000591849 LUZP6Q538Z0 58 aa2.92□□□□□ -1.94
BRCA1-227ENST00000591849 KRTAP4-11Q9BYQ6 195 aa2.92□□□□□ -1.94
BRCA1-227ENST00000591849 KRTAP5-2Q701N4 177 aa2.89□□□□□ -1.95
BRCA1-227ENST00000591849 KRTAP6-2Q3LI66 62 aa2.88□□□□□ -1.95
BRCA1-227ENST00000591849 MUC5ACP98088 5654 aa2.84□□□□□ -1.95
BRCA1-227ENST00000591849 AHNAKQ09666 5890 aaKnown RBP2.83□□□□□ -1.96
BRCA1-227ENST00000591849 MT3P25713 68 aa2.83□□□□□ -1.96
BRCA1-227ENST00000591849 KRTAP5-8O75690 187 aa2.82□□□□□ -1.96
BRCA1-227ENST00000591849 MUC5BQ9HC84 5762 aaPredicted RBP2.79□□□□□ -1.96
BRCA1-227ENST00000591849 OBSCNQ5VST9 7968 aa2.77□□□□□ -1.97
BRCA1-227ENST00000591849 KRTAP9-9Q9BYP9 154 aa2.75□□□□□ -1.97
BRCA1-227ENST00000591849 NDUFAF8A1L188 74 aa2.72□□□□□ -1.97
BRCA1-227ENST00000591849 KRTAP4-12Q9BQ66 201 aa2.63□□□□□ -1.99
BRCA1-227ENST00000591849 KRTAP5-1Q6L8H4 278 aa2.61□□□□□ -1.99
BRCA1-227ENST00000591849 LCE1EQ5T753 118 aa2.53□□□□□ -2
BRCA1-227ENST00000591849 A0A0A0MQY5 61 aa2.48□□□□□ -2.01
BRCA1-227ENST00000591849 LCE1BQ5T7P3 118 aa2.44□□□□□ -2.02
BRCA1-227ENST00000591849 LCE3DQ9BYE3 92 aa2.41□□□□□ -2.02
BRCA1-227ENST00000591849 KRTAP4-2Q9BYR5 136 aa2.4□□□□□ -2.03
BRCA1-227ENST00000591849 INE1O15225 51 aa2.34□□□□□ -2.03
BRCA1-227ENST00000591849 LCE1CQ5T751 118 aa2.34□□□□□ -2.03
BRCA1-227ENST00000591849 H3BS24 57 aa2.32□□□□□ -2.04
BRCA1-227ENST00000591849 LCE3EQ5T5B0 92 aa2.29□□□□□ -2.04
BRCA1-227ENST00000591849 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.11□□□□□ -2.07
BRCA1-227ENST00000591849 KRTAP5-11Q6L8G4 156 aa2.1□□□□□ -2.07
BRCA1-227ENST00000591849 LCE1FQ5T754 118 aa2.09□□□□□ -2.07
BRCA1-227ENST00000591849 KRTAP21-2Q3LI59 83 aa1.96□□□□□ -2.1
BRCA1-227ENST00000591849 PHGR1C9JFL3 82 aa1.95□□□□□ -2.1
BRCA1-227ENST00000591849 PRM1P04553 51 aa1.84□□□□□ -2.11
BRCA1-227ENST00000591849 KRTAP4-4Q9BYR3 166 aa1.84□□□□□ -2.11
BRCA1-227ENST00000591849 MUC19Q7Z5P9 8384 aa1.73□□□□□ -2.13
BRCA1-227ENST00000591849 KRTAP21-1Q3LI58 79 aa1.51□□□□□ -2.17
BRCA1-227ENST00000591849 MUC16Q8WXI7 14507 aa1.25□□□□□ -2.21
Retrieved 77 of 20,778 RNA–protein pairs in 9.5 ms