RNA–Protein interactions for RNA: ENST00000584908.5

ERBB2-222, Transcript of erb-b2 receptor tyrosine kinase 2, human

TSL 1 (best)

Gene ERBB2, Length 1,316 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ERBB2-222	ENST00000584908	LCE3A	Q5TA76	89 aa		5.91	□□□□□ -1.46
ERBB2-222	ENST00000584908	MT1G	P13640	62 aa		5.85	□□□□□ -1.47
ERBB2-222	ENST00000584908		K7ERS5	55 aa		5.81	□□□□□ -1.48
ERBB2-222	ENST00000584908	MT1L	Q93083	61 aa		5.81	□□□□□ -1.48
ERBB2-222	ENST00000584908	PP632	Q6XCG6	107 aa		5.78	□□□□□ -1.48
ERBB2-222	ENST00000584908	KRTAP25-1	Q3LHN0	102 aa		5.76	□□□□□ -1.49
ERBB2-222	ENST00000584908	DST	Q03001	7570 aa	Known RBP	5.75	□□□□□ -1.49
ERBB2-222	ENST00000584908	MT1M	Q8N339	61 aa		5.74	□□□□□ -1.49
ERBB2-222	ENST00000584908	CDC42SE1	Q9NRR8	79 aa		5.71	□□□□□ -1.5
ERBB2-222	ENST00000584908	KRTAP12-3	P60328	96 aa		5.7	□□□□□ -1.5
ERBB2-222	ENST00000584908	SVIP	Q8NHG7	77 aa		5.68	□□□□□ -1.5
ERBB2-222	ENST00000584908	BRK1	Q8WUW1	75 aa		5.66	□□□□□ -1.5
ERBB2-222	ENST00000584908	KRTAP23-1	A1A580	65 aa		5.6	□□□□□ -1.51
ERBB2-222	ENST00000584908	KRTAP4-3	Q9BYR4	195 aa		5.56	□□□□□ -1.52
ERBB2-222	ENST00000584908	KRTAP4-7	Q9BYR0	210 aa		5.49	□□□□□ -1.53
ERBB2-222	ENST00000584908	KRTAP19-4	Q3LI73	84 aa		5.48	□□□□□ -1.53
ERBB2-222	ENST00000584908	ROMO1	P60602	79 aa		5.47	□□□□□ -1.53
ERBB2-222	ENST00000584908	KRTAP4-9	Q9BYQ8	210 aa		5.47	□□□□□ -1.53
ERBB2-222	ENST00000584908	LCE4A	Q5TA78	99 aa		5.46	□□□□□ -1.54
ERBB2-222	ENST00000584908	KRTAP5-4	Q6L8H1	288 aa		5.43	□□□□□ -1.54
ERBB2-222	ENST00000584908	LCE1D	Q5T752	114 aa		5.4	□□□□□ -1.55
ERBB2-222	ENST00000584908	KRTAP15-1	Q3LI76	137 aa		5.39	□□□□□ -1.55
ERBB2-222	ENST00000584908	PMAIP1	Q13794	54 aa		5.35	□□□□□ -1.55
ERBB2-222	ENST00000584908	PRO0628	Q9UI54	55 aa		5.35	□□□□□ -1.55
ERBB2-222	ENST00000584908	HMCN1	Q96RW7	5635 aa		5.33	□□□□□ -1.56
ERBB2-222	ENST00000584908	MT4	P47944	62 aa		5.31	□□□□□ -1.56
ERBB2-222	ENST00000584908	KRTAP5-5	Q701N2	237 aa	Predicted RBP	5.29	□□□□□ -1.56
ERBB2-222	ENST00000584908	LCE3C	Q5T5A8	94 aa		5.27	□□□□□ -1.57
ERBB2-222	ENST00000584908	KRTAP4-6	Q9BYQ5	205 aa		5.22	□□□□□ -1.57
ERBB2-222	ENST00000584908	LOC100996750	A0A140TA64	210 aa		5.2	□□□□□ -1.58
ERBB2-222	ENST00000584908	GPR98	Q8WXG9	6306 aa		5.09	□□□□□ -1.59
ERBB2-222	ENST00000584908	SPRR5	A0A1B0GTR4	108 aa		5.09	□□□□□ -1.59
ERBB2-222	ENST00000584908	KRTAP20-2	Q3LI61	65 aa		5.07	□□□□□ -1.6
ERBB2-222	ENST00000584908	KRTAP12-4	P60329	112 aa		5.06	□□□□□ -1.6
ERBB2-222	ENST00000584908	AHNAK2	Q8IVF2	5795 aa		5.04	□□□□□ -1.6
ERBB2-222	ENST00000584908	KTN1-AS1	Q86SY8	53 aa		5	□□□□□ -1.61
ERBB2-222	ENST00000584908	SYNE1	Q8NF91	8797 aa	Known RBP	4.99	□□□□□ -1.61
ERBB2-222	ENST00000584908	KRTAP9-6	A8MVA2	160 aa		4.98	□□□□□ -1.61
ERBB2-222	ENST00000584908	KRTAP5-10	Q6L8G5	202 aa		4.97	□□□□□ -1.61
ERBB2-222	ENST00000584908	MT1A	P04731	61 aa		4.95	□□□□□ -1.62
ERBB2-222	ENST00000584908	PRAC1	Q96KF2	57 aa		4.95	□□□□□ -1.62
ERBB2-222	ENST00000584908	KRTAP5-3	Q6L8H2	238 aa		4.94	□□□□□ -1.62
ERBB2-222	ENST00000584908	KRTAP6-1	Q3LI64	71 aa		4.9	□□□□□ -1.63
ERBB2-222	ENST00000584908	KRTAP5-2	Q701N4	177 aa		4.78	□□□□□ -1.64
ERBB2-222	ENST00000584908	KRTAP9-4	Q9BYQ2	154 aa		4.76	□□□□□ -1.65
ERBB2-222	ENST00000584908	KRTAP5-7	Q6L8G8	165 aa		4.74	□□□□□ -1.65
ERBB2-222	ENST00000584908	KRTAP6-2	Q3LI66	62 aa		4.64	□□□□□ -1.67
ERBB2-222	ENST00000584908	KRTAP4-11	Q9BYQ6	195 aa		4.59	□□□□□ -1.67
ERBB2-222	ENST00000584908	MT3	P25713	68 aa		4.51	□□□□□ -1.69
ERBB2-222	ENST00000584908	KRTAP5-8	O75690	187 aa		4.45	□□□□□ -1.7
ERBB2-222	ENST00000584908	OBSCN	Q5VST9	7968 aa		4.37	□□□□□ -1.71
ERBB2-222	ENST00000584908	LUZP6	Q538Z0	58 aa		4.27	□□□□□ -1.73
ERBB2-222	ENST00000584908	KRTAP5-1	Q6L8H4	278 aa		4.24	□□□□□ -1.73
ERBB2-222	ENST00000584908	KRTAP9-9	Q9BYP9	154 aa		4.16	□□□□□ -1.74
ERBB2-222	ENST00000584908	MUC5B	Q9HC84	5762 aa	Predicted RBP	4.15	□□□□□ -1.74
ERBB2-222	ENST00000584908	MUC5AC	P98088	5654 aa		4.14	□□□□□ -1.75
ERBB2-222	ENST00000584908	LCE1E	Q5T753	118 aa		4.14	□□□□□ -1.75
ERBB2-222	ENST00000584908	AHNAK	Q09666	5890 aa	Known RBP	4.08	□□□□□ -1.76
ERBB2-222	ENST00000584908		H3BS24	57 aa		3.92	□□□□□ -1.78
ERBB2-222	ENST00000584908	KRTAP4-2	Q9BYR5	136 aa		3.88	□□□□□ -1.79
ERBB2-222	ENST00000584908	NDUFAF8	A1L188	74 aa		3.85	□□□□□ -1.79
ERBB2-222	ENST00000584908	LCE1C	Q5T751	118 aa		3.84	□□□□□ -1.79
ERBB2-222	ENST00000584908	LCE1B	Q5T7P3	118 aa		3.84	□□□□□ -1.79
ERBB2-222	ENST00000584908	LCE3D	Q9BYE3	92 aa		3.82	□□□□□ -1.8
ERBB2-222	ENST00000584908	LCE3E	Q5T5B0	92 aa		3.63	□□□□□ -1.83
ERBB2-222	ENST00000584908	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	3.53	□□□□□ -1.84
ERBB2-222	ENST00000584908	KRTAP5-11	Q6L8G4	156 aa		3.46	□□□□□ -1.85
ERBB2-222	ENST00000584908		A0A0A0MQY5	61 aa		3.44	□□□□□ -1.86
ERBB2-222	ENST00000584908	KRTAP4-12	Q9BQ66	201 aa		3.39	□□□□□ -1.87
ERBB2-222	ENST00000584908	LCE1F	Q5T754	118 aa		3.34	□□□□□ -1.87
ERBB2-222	ENST00000584908	KRTAP21-2	Q3LI59	83 aa		3.24	□□□□□ -1.89
ERBB2-222	ENST00000584908	INE1	O15225	51 aa		3.22	□□□□□ -1.89
ERBB2-222	ENST00000584908	PHGR1	C9JFL3	82 aa		2.98	□□□□□ -1.93
ERBB2-222	ENST00000584908	KRTAP4-4	Q9BYR3	166 aa		2.88	□□□□□ -1.95
ERBB2-222	ENST00000584908	PRM1	P04553	51 aa		2.79	□□□□□ -1.96
ERBB2-222	ENST00000584908	MUC19	Q7Z5P9	8384 aa		2.67	□□□□□ -1.98
ERBB2-222	ENST00000584908	KRTAP21-1	Q3LI58	79 aa		2.17	□□□□□ -2.06
ERBB2-222	ENST00000584908	MUC16	Q8WXI7	14507 aa		1.93	□□□□□ -2.1

Retrieved 78 of 20,778 RNA–protein pairs in 109.8 ms