RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 DSTQ03001 7570 aaKnown RBP7.17□□□□□ -1.26
SS18-218ENST00000581021 MT1MQ8N339 61 aa7.13□□□□□ -1.27
SS18-218ENST00000581021 PP632Q6XCG6 107 aa7.06□□□□□ -1.28
SS18-218ENST00000581021 PCP4P48539 62 aa7.05□□□□□ -1.28
SS18-218ENST00000581021 KRTAP12-3P60328 96 aa7.02□□□□□ -1.29
SS18-218ENST00000581021 KRTAP4-3Q9BYR4 195 aa7.01□□□□□ -1.29
SS18-218ENST00000581021 K7ERS5 55 aa7□□□□□ -1.29
SS18-218ENST00000581021 KRTAP25-1Q3LHN0 102 aa6.99□□□□□ -1.29
SS18-218ENST00000581021 RPS28P62857 69 aaKnown RBP6.98□□□□□ -1.29
SS18-218ENST00000581021 A6NED7 52 aa6.97□□□□□ -1.29
SS18-218ENST00000581021 KRTAP4-7Q9BYR0 210 aa6.91□□□□□ -1.3
SS18-218ENST00000581021 LOC100996750A0A140TA64 210 aa6.89□□□□□ -1.31
SS18-218ENST00000581021 KRTAP4-6Q9BYQ5 205 aa6.89□□□□□ -1.31
SS18-218ENST00000581021 KRTAP4-9Q9BYQ8 210 aa6.89□□□□□ -1.31
SS18-218ENST00000581021 SVIPQ8NHG7 77 aa6.85□□□□□ -1.31
SS18-218ENST00000581021 LCE1DQ5T752 114 aa6.74□□□□□ -1.33
SS18-218ENST00000581021 KRTAP23-1A1A580 65 aa6.72□□□□□ -1.33
SS18-218ENST00000581021 LCE4AQ5TA78 99 aa6.72□□□□□ -1.33
SS18-218ENST00000581021 CDC42SE1Q9NRR8 79 aa6.71□□□□□ -1.34
SS18-218ENST00000581021 GPR98Q8WXG9 6306 aa6.7□□□□□ -1.34
SS18-218ENST00000581021 KRTAP5-4Q6L8H1 288 aa6.7□□□□□ -1.34
SS18-218ENST00000581021 MT4P47944 62 aa6.68□□□□□ -1.34
SS18-218ENST00000581021 HMCN1Q96RW7 5635 aa6.65□□□□□ -1.34
SS18-218ENST00000581021 ROMO1P60602 79 aa6.65□□□□□ -1.34
SS18-218ENST00000581021 KRTAP15-1Q3LI76 137 aa6.59□□□□□ -1.35
SS18-218ENST00000581021 KRTAP5-5Q701N2 237 aaPredicted RBP6.55□□□□□ -1.36
SS18-218ENST00000581021 KRTAP19-4Q3LI73 84 aa6.5□□□□□ -1.37
SS18-218ENST00000581021 LCE3CQ5T5A8 94 aa6.48□□□□□ -1.37
SS18-218ENST00000581021 AHNAK2Q8IVF2 5795 aa6.35□□□□□ -1.39
SS18-218ENST00000581021 KRTAP20-2Q3LI61 65 aa6.31□□□□□ -1.4
SS18-218ENST00000581021 SPRR5A0A1B0GTR4 108 aa6.25□□□□□ -1.41
SS18-218ENST00000581021 SYNE1Q8NF91 8797 aaKnown RBP6.24□□□□□ -1.41
SS18-218ENST00000581021 KRTAP9-6A8MVA2 160 aa6.22□□□□□ -1.41
SS18-218ENST00000581021 KRTAP12-4P60329 112 aa6.22□□□□□ -1.41
SS18-218ENST00000581021 KRTAP5-10Q6L8G5 202 aa6.19□□□□□ -1.42
SS18-218ENST00000581021 KRTAP5-3Q6L8H2 238 aa6.14□□□□□ -1.43
SS18-218ENST00000581021 BRK1Q8WUW1 75 aa6.14□□□□□ -1.43
SS18-218ENST00000581021 MT1AP04731 61 aa6.1□□□□□ -1.43
SS18-218ENST00000581021 KRTAP6-1Q3LI64 71 aa6.1□□□□□ -1.43
SS18-218ENST00000581021 KRTAP5-7Q6L8G8 165 aa5.92□□□□□ -1.46
SS18-218ENST00000581021 KRTAP5-2Q701N4 177 aa5.92□□□□□ -1.46
SS18-218ENST00000581021 KRTAP9-4Q9BYQ2 154 aa5.87□□□□□ -1.47
SS18-218ENST00000581021 KRTAP4-12Q9BQ66 201 aa5.84□□□□□ -1.47
SS18-218ENST00000581021 KRTAP9-9Q9BYP9 154 aa5.79□□□□□ -1.48
SS18-218ENST00000581021 KRTAP6-2Q3LI66 62 aa5.78□□□□□ -1.48
SS18-218ENST00000581021 PMAIP1Q13794 54 aa5.75□□□□□ -1.49
SS18-218ENST00000581021 KRTAP4-11Q9BYQ6 195 aa5.7□□□□□ -1.5
SS18-218ENST00000581021 PRAC1Q96KF2 57 aa5.63□□□□□ -1.51
SS18-218ENST00000581021 KRTAP5-8O75690 187 aa5.54□□□□□ -1.52
SS18-218ENST00000581021 MT3P25713 68 aa5.53□□□□□ -1.52
SS18-218ENST00000581021 PRO0628Q9UI54 55 aa5.48□□□□□ -1.53
SS18-218ENST00000581021 OBSCNQ5VST9 7968 aa5.43□□□□□ -1.54
SS18-218ENST00000581021 KRTAP4-2Q9BYR5 136 aa5.34□□□□□ -1.55
SS18-218ENST00000581021 KRTAP5-1Q6L8H4 278 aa5.28□□□□□ -1.56
SS18-218ENST00000581021 KTN1-AS1Q86SY8 53 aa5.2□□□□□ -1.58
SS18-218ENST00000581021 MUC5BQ9HC84 5762 aaPredicted RBP5.19□□□□□ -1.58
SS18-218ENST00000581021 MUC5ACP98088 5654 aa5.18□□□□□ -1.58
SS18-218ENST00000581021 AHNAKQ09666 5890 aaKnown RBP5.16□□□□□ -1.58
SS18-218ENST00000581021 LCE1EQ5T753 118 aa5.05□□□□□ -1.6
SS18-218ENST00000581021 H3BS24 57 aa5.02□□□□□ -1.61
SS18-218ENST00000581021 A0A0A0MQY5 61 aa4.93□□□□□ -1.62
SS18-218ENST00000581021 LCE1BQ5T7P3 118 aa4.76□□□□□ -1.65
SS18-218ENST00000581021 LCE1CQ5T751 118 aa4.7□□□□□ -1.66
SS18-218ENST00000581021 LCE3DQ9BYE3 92 aa4.67□□□□□ -1.66
SS18-218ENST00000581021 LUZP6Q538Z0 58 aa4.59□□□□□ -1.67
SS18-218ENST00000581021 LCE3EQ5T5B0 92 aa4.42□□□□□ -1.7
SS18-218ENST00000581021 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.32□□□□□ -1.72
SS18-218ENST00000581021 KRTAP5-11Q6L8G4 156 aa4.26□□□□□ -1.73
SS18-218ENST00000581021 LCE1FQ5T754 118 aa4.05□□□□□ -1.76
SS18-218ENST00000581021 KRTAP21-2Q3LI59 83 aa4.02□□□□□ -1.77
SS18-218ENST00000581021 NDUFAF8A1L188 74 aa3.84□□□□□ -1.79
SS18-218ENST00000581021 PHGR1C9JFL3 82 aa3.68□□□□□ -1.82
SS18-218ENST00000581021 KRTAP4-4Q9BYR3 166 aa3.67□□□□□ -1.82
SS18-218ENST00000581021 PRM1P04553 51 aa3.45□□□□□ -1.86
SS18-218ENST00000581021 MUC19Q7Z5P9 8384 aa3.36□□□□□ -1.87
SS18-218ENST00000581021 INE1O15225 51 aa3.12□□□□□ -1.91
SS18-218ENST00000581021 KRTAP21-1Q3LI58 79 aa2.74□□□□□ -1.97
SS18-218ENST00000581021 MUC16Q8WXI7 14507 aa2.37□□□□□ -2.03
Retrieved 78 of 20,778 RNA–protein pairs in 76.5 ms