RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 ABCA13Q86UQ4 5058 aa1.79□□□□□ -2.12
NUP88-213ENST00000576862 C9orf92A6NGG3 77 aa1.79□□□□□ -2.12
NUP88-213ENST00000576862 PCOTHQ58A44 107 aa1.77□□□□□ -2.13
NUP88-213ENST00000576862 TNXBP22105 4242 aa1.76□□□□□ -2.13
NUP88-213ENST00000576862 PCLOQ9Y6V0 5065 aa1.73□□□□□ -2.13
NUP88-213ENST00000576862 COX6B2Q6YFQ2 88 aa1.73□□□□□ -2.13
NUP88-213ENST00000576862 CRIPTQ9P021 101 aa1.73□□□□□ -2.13
NUP88-213ENST00000576862 HMCN2Q8NDA2 5059 aa1.68□□□□□ -2.14
NUP88-213ENST00000576862 FCGBPQ9Y6R7 5405 aaPredicted RBP1.68□□□□□ -2.14
NUP88-213ENST00000576862 HERC1Q15751 4861 aa1.67□□□□□ -2.14
NUP88-213ENST00000576862 LRP2P98164 4655 aa1.66□□□□□ -2.14
NUP88-213ENST00000576862 LPAP08519 4548 aa1.64□□□□□ -2.15
NUP88-213ENST00000576862 UBR4Q5T4S7 5183 aa1.63□□□□□ -2.15
NUP88-213ENST00000576862 KRTAP19-2Q3LHN2 52 aa1.62□□□□□ -2.15
NUP88-213ENST00000576862 H1FX-AS1Q4G0G2 97 aa1.62□□□□□ -2.15
NUP88-213ENST00000576862 S4R3F8 94 aa1.61□□□□□ -2.15
NUP88-213ENST00000576862 MUC17Q685J3 4493 aa1.61□□□□□ -2.15
NUP88-213ENST00000576862 RNF213Q63HN8 5207 aa1.58□□□□□ -2.16
NUP88-213ENST00000576862 H0YAA0 97 aa1.58□□□□□ -2.16
NUP88-213ENST00000576862 MUC2Q02817 5179 aa1.57□□□□□ -2.16
NUP88-213ENST00000576862 FAT4Q6V0I7 4981 aa1.54□□□□□ -2.16
NUP88-213ENST00000576862 C10orf95Q9H7T3 257 aa1.53□□□□□ -2.16
NUP88-213ENST00000576862 MT1HP80294 61 aa1.52□□□□□ -2.17
NUP88-213ENST00000576862 FLGP20930 4061 aaPredicted RBP1.52□□□□□ -2.17
NUP88-213ENST00000576862 A0A0D9SG42 100 aa1.51□□□□□ -2.17
NUP88-213ENST00000576862 M0QZ58 72 aa1.49□□□□□ -2.17
NUP88-213ENST00000576862 M0R2T5 61 aa1.48□□□□□ -2.17
NUP88-213ENST00000576862 MT2AP02795 61 aa1.48□□□□□ -2.17
NUP88-213ENST00000576862 MT1FP04733 61 aa1.47□□□□□ -2.17
NUP88-213ENST00000576862 SPRR2GQ9BYE4 73 aa1.44□□□□□ -2.18
NUP88-213ENST00000576862 MT1BP07438 61 aa1.4□□□□□ -2.19
NUP88-213ENST00000576862 KRTAP19-8Q3LI54 63 aa1.4□□□□□ -2.19
NUP88-213ENST00000576862 MT1XP80297 61 aa1.36□□□□□ -2.19
NUP88-213ENST00000576862 USH2AO75445 5202 aa1.36□□□□□ -2.19
NUP88-213ENST00000576862 TNP1P09430 55 aa1.32□□□□□ -2.2
NUP88-213ENST00000576862 SSPOA2VEC9 5147 aa1.31□□□□□ -2.2
NUP88-213ENST00000576862 KRTAP19-6Q3LI70 58 aa1.27□□□□□ -2.21
NUP88-213ENST00000576862 KRTAP8-1Q8IUC2 63 aa1.26□□□□□ -2.21
NUP88-213ENST00000576862 KRTAP19-5Q3LI72 72 aa1.23□□□□□ -2.21
NUP88-213ENST00000576862 KRTAP19-7Q3SYF9 63 aa1.21□□□□□ -2.22
NUP88-213ENST00000576862 FSIP2Q5CZC0 6907 aa1.21□□□□□ -2.22
NUP88-213ENST00000576862 MT1EP04732 61 aa1.19□□□□□ -2.22
NUP88-213ENST00000576862 KMT2DO14686 5537 aa1.18□□□□□ -2.22
NUP88-213ENST00000576862 MT1LQ93083 61 aa1.17□□□□□ -2.22
NUP88-213ENST00000576862 KRTAP5-10Q6L8G5 202 aa1.15□□□□□ -2.23
NUP88-213ENST00000576862 SPRR2FQ96RM1 72 aa1.13□□□□□ -2.23
NUP88-213ENST00000576862 MUC16Q8WXI7 14507 aa1.12□□□□□ -2.23
NUP88-213ENST00000576862 KRTAP19-3Q7Z4W3 81 aa1.12□□□□□ -2.23
NUP88-213ENST00000576862 MT1MQ8N339 61 aa1.11□□□□□ -2.23
NUP88-213ENST00000576862 MUC12Q9UKN1 5478 aa1.11□□□□□ -2.23
NUP88-213ENST00000576862 MT1GP13640 62 aa1.1□□□□□ -2.23
NUP88-213ENST00000576862 MACF1Q9UPN3 7388 aaKnown RBP1.08□□□□□ -2.24
NUP88-213ENST00000576862 MDN1Q9NU22 5596 aa1.06□□□□□ -2.24
NUP88-213ENST00000576862 SPRR2EP22531 72 aa1.06□□□□□ -2.24
NUP88-213ENST00000576862 SPRR2BP35325 72 aa1.06□□□□□ -2.24
NUP88-213ENST00000576862 SPRR2AP35326 72 aa1.06□□□□□ -2.24
NUP88-213ENST00000576862 KRTAP2-3P0C7H8 128 aa1.05□□□□□ -2.24
NUP88-213ENST00000576862 KRTAP2-4Q9BYR9 128 aa1.05□□□□□ -2.24
NUP88-213ENST00000576862 KRTAP2-1Q9BYU5 128 aa1.05□□□□□ -2.24
NUP88-213ENST00000576862 SYNE2Q8WXH0 6885 aaKnown RBP1.05□□□□□ -2.24
NUP88-213ENST00000576862 SPRR2DP22532 72 aa1.02□□□□□ -2.25
NUP88-213ENST00000576862 NEBP20929 6669 aa1.01□□□□□ -2.25
NUP88-213ENST00000576862 MT1AP04731 61 aa0.98□□□□□ -2.25
NUP88-213ENST00000576862 KRTAP6-1Q3LI64 71 aa0.98□□□□□ -2.25
NUP88-213ENST00000576862 DSTQ03001 7570 aaKnown RBP0.94□□□□□ -2.26
NUP88-213ENST00000576862 PRM1P04553 51 aa0.91□□□□□ -2.26
NUP88-213ENST00000576862 KRTAP20-1Q3LI63 56 aa0.91□□□□□ -2.26
NUP88-213ENST00000576862 SYNE1Q8NF91 8797 aaKnown RBP0.9□□□□□ -2.26
NUP88-213ENST00000576862 KRTAP6-2Q3LI66 62 aa0.9□□□□□ -2.27
NUP88-213ENST00000576862 MT4P47944 62 aa0.89□□□□□ -2.27
NUP88-213ENST00000576862 KRTAP20-2Q3LI61 65 aa0.88□□□□□ -2.27
NUP88-213ENST00000576862 AHNAK2Q8IVF2 5795 aa0.86□□□□□ -2.27
NUP88-213ENST00000576862 AHNAKQ09666 5890 aaKnown RBP0.83□□□□□ -2.28
NUP88-213ENST00000576862 MUC5BQ9HC84 5762 aaPredicted RBP0.81□□□□□ -2.28
NUP88-213ENST00000576862 KRTAP21-1Q3LI58 79 aa0.78□□□□□ -2.28
NUP88-213ENST00000576862 GPR98Q8WXG9 6306 aa0.73□□□□□ -2.29
NUP88-213ENST00000576862 MUC5ACP98088 5654 aa0.73□□□□□ -2.29
NUP88-213ENST00000576862 PHGR1C9JFL3 82 aa0.54□□□□□ -2.32
Retrieved 78 of 20,778 RNA–protein pairs in 11.3 ms