RNA–Protein interactions for RNA: ENST00000572043.5

CTDNEP1-207, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 3 BASIC

Gene CTDNEP1, Length 857 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-207ENST00000572043 MT1MQ8N339 61 aa6.3□□□□□ -1.4
CTDNEP1-207ENST00000572043 KRTAP4-9Q9BYQ8 210 aa6.3□□□□□ -1.4
CTDNEP1-207ENST00000572043 KRTAP4-3Q9BYR4 195 aa6.22□□□□□ -1.41
CTDNEP1-207ENST00000572043 MIR22HGQ0VDD5 57 aa6.19□□□□□ -1.42
CTDNEP1-207ENST00000572043 KRTAP12-3P60328 96 aa6.14□□□□□ -1.43
CTDNEP1-207ENST00000572043 LCE1DQ5T752 114 aa6.12□□□□□ -1.43
CTDNEP1-207ENST00000572043 PSPHP1O15172 72 aa6.11□□□□□ -1.43
CTDNEP1-207ENST00000572043 MT4P47944 62 aa6.1□□□□□ -1.43
CTDNEP1-207ENST00000572043 KRTAP4-7Q9BYR0 210 aa6.09□□□□□ -1.43
CTDNEP1-207ENST00000572043 LCE4AQ5TA78 99 aa6.08□□□□□ -1.44
CTDNEP1-207ENST00000572043 K7ERS5 55 aa6.05□□□□□ -1.44
CTDNEP1-207ENST00000572043 V9GYY9 64 aa6.04□□□□□ -1.44
CTDNEP1-207ENST00000572043 KRTAP25-1Q3LHN0 102 aa6.03□□□□□ -1.44
CTDNEP1-207ENST00000572043 GPR98Q8WXG9 6306 aa6.03□□□□□ -1.44
CTDNEP1-207ENST00000572043 Q1T7F1 81 aa6□□□□□ -1.45
CTDNEP1-207ENST00000572043 KRTAP5-4Q6L8H1 288 aa5.95□□□□□ -1.46
CTDNEP1-207ENST00000572043 A0A0A0MQY5 61 aa5.92□□□□□ -1.46
CTDNEP1-207ENST00000572043 KRTAP4-6Q9BYQ5 205 aa5.9□□□□□ -1.46
CTDNEP1-207ENST00000572043 A6NED7 52 aa5.89□□□□□ -1.47
CTDNEP1-207ENST00000572043 HMCN1Q96RW7 5635 aa5.88□□□□□ -1.47
CTDNEP1-207ENST00000572043 KRTAP23-1A1A580 65 aa5.87□□□□□ -1.47
CTDNEP1-207ENST00000572043 LOC100996750A0A140TA64 210 aa5.76□□□□□ -1.49
CTDNEP1-207ENST00000572043 KRTAP5-5Q701N2 237 aaPredicted RBP5.75□□□□□ -1.49
CTDNEP1-207ENST00000572043 CDC42SE1Q9NRR8 79 aa5.74□□□□□ -1.49
CTDNEP1-207ENST00000572043 KRTAP15-1Q3LI76 137 aa5.73□□□□□ -1.49
CTDNEP1-207ENST00000572043 AHNAK2Q8IVF2 5795 aa5.67□□□□□ -1.5
CTDNEP1-207ENST00000572043 RPS28P62857 69 aaKnown RBP5.66□□□□□ -1.5
CTDNEP1-207ENST00000572043 KRTAP20-2Q3LI61 65 aa5.66□□□□□ -1.5
CTDNEP1-207ENST00000572043 KRTAP19-4Q3LI73 84 aa5.66□□□□□ -1.5
CTDNEP1-207ENST00000572043 ROMO1P60602 79 aa5.65□□□□□ -1.5
CTDNEP1-207ENST00000572043 LCE3CQ5T5A8 94 aa5.64□□□□□ -1.51
CTDNEP1-207ENST00000572043 KRTAP5-10Q6L8G5 202 aa5.64□□□□□ -1.51
CTDNEP1-207ENST00000572043 KRTAP12-4P60329 112 aa5.61□□□□□ -1.51
CTDNEP1-207ENST00000572043 SPRR5A0A1B0GTR4 108 aa5.58□□□□□ -1.52
CTDNEP1-207ENST00000572043 KRTAP5-3Q6L8H2 238 aa5.54□□□□□ -1.52
CTDNEP1-207ENST00000572043 SYNE1Q8NF91 8797 aaKnown RBP5.49□□□□□ -1.53
CTDNEP1-207ENST00000572043 KRTAP5-7Q6L8G8 165 aa5.4□□□□□ -1.54
CTDNEP1-207ENST00000572043 MT1AP04731 61 aa5.37□□□□□ -1.55
CTDNEP1-207ENST00000572043 KRTAP6-1Q3LI64 71 aa5.37□□□□□ -1.55
CTDNEP1-207ENST00000572043 KRTAP9-6A8MVA2 160 aa5.34□□□□□ -1.55
CTDNEP1-207ENST00000572043 KRTAP5-2Q701N4 177 aa5.22□□□□□ -1.57
CTDNEP1-207ENST00000572043 KRTAP9-4Q9BYQ2 154 aa5.2□□□□□ -1.58
CTDNEP1-207ENST00000572043 KRTAP4-11Q9BYQ6 195 aa5.16□□□□□ -1.58
CTDNEP1-207ENST00000572043 KRTAP6-2Q3LI66 62 aa5.13□□□□□ -1.59
CTDNEP1-207ENST00000572043 BRK1Q8WUW1 75 aa5.05□□□□□ -1.6
CTDNEP1-207ENST00000572043 KRTAP5-8O75690 187 aa4.97□□□□□ -1.61
CTDNEP1-207ENST00000572043 MT3P25713 68 aa4.92□□□□□ -1.62
CTDNEP1-207ENST00000572043 PRAC1Q96KF2 57 aa4.91□□□□□ -1.62
CTDNEP1-207ENST00000572043 OBSCNQ5VST9 7968 aa4.82□□□□□ -1.64
CTDNEP1-207ENST00000572043 KRTAP9-9Q9BYP9 154 aa4.73□□□□□ -1.65
CTDNEP1-207ENST00000572043 PMAIP1Q13794 54 aa4.71□□□□□ -1.66
CTDNEP1-207ENST00000572043 KRTAP5-1Q6L8H4 278 aa4.7□□□□□ -1.66
CTDNEP1-207ENST00000572043 MUC5ACP98088 5654 aa4.65□□□□□ -1.67
CTDNEP1-207ENST00000572043 AHNAKQ09666 5890 aaKnown RBP4.63□□□□□ -1.67
CTDNEP1-207ENST00000572043 MUC5BQ9HC84 5762 aaPredicted RBP4.62□□□□□ -1.67
CTDNEP1-207ENST00000572043 LCE1EQ5T753 118 aa4.46□□□□□ -1.7
CTDNEP1-207ENST00000572043 NDUFAF8A1L188 74 aa4.43□□□□□ -1.7
CTDNEP1-207ENST00000572043 LCE1BQ5T7P3 118 aa4.32□□□□□ -1.72
CTDNEP1-207ENST00000572043 PRO0628Q9UI54 55 aa4.3□□□□□ -1.72
CTDNEP1-207ENST00000572043 KRTAP4-2Q9BYR5 136 aa4.27□□□□□ -1.73
CTDNEP1-207ENST00000572043 KRTAP4-12Q9BQ66 201 aa4.26□□□□□ -1.73
CTDNEP1-207ENST00000572043 LCE1CQ5T751 118 aa4.15□□□□□ -1.75
CTDNEP1-207ENST00000572043 KTN1-AS1Q86SY8 53 aa4.13□□□□□ -1.75
CTDNEP1-207ENST00000572043 LCE3DQ9BYE3 92 aa4.07□□□□□ -1.76
CTDNEP1-207ENST00000572043 LUZP6Q538Z0 58 aa3.99□□□□□ -1.77
CTDNEP1-207ENST00000572043 LCE3EQ5T5B0 92 aa3.83□□□□□ -1.8
CTDNEP1-207ENST00000572043 KRTAP5-11Q6L8G4 156 aa3.76□□□□□ -1.81
CTDNEP1-207ENST00000572043 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.76□□□□□ -1.81
CTDNEP1-207ENST00000572043 LCE1FQ5T754 118 aa3.62□□□□□ -1.83
CTDNEP1-207ENST00000572043 KRTAP21-2Q3LI59 83 aa3.51□□□□□ -1.85
CTDNEP1-207ENST00000572043 PHGR1C9JFL3 82 aa3.32□□□□□ -1.88
CTDNEP1-207ENST00000572043 KRTAP4-4Q9BYR3 166 aa3.29□□□□□ -1.88
CTDNEP1-207ENST00000572043 MUC19Q7Z5P9 8384 aa2.97□□□□□ -1.93
CTDNEP1-207ENST00000572043 PRM1P04553 51 aa2.92□□□□□ -1.94
CTDNEP1-207ENST00000572043 INE1O15225 51 aa2.81□□□□□ -1.96
CTDNEP1-207ENST00000572043 KRTAP21-1Q3LI58 79 aa2.49□□□□□ -2.01
CTDNEP1-207ENST00000572043 MUC16Q8WXI7 14507 aa2.13□□□□□ -2.07
Retrieved 77 of 20,778 RNA–protein pairs in 11.9 ms