RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 PRR15LQ9BU68 103 aa5.6□□□□□ -1.51
VPS39-210ENST00000568357 MT1EP04732 61 aa5.59□□□□□ -1.51
VPS39-210ENST00000568357 TMEM258P61165 79 aa5.59□□□□□ -1.51
VPS39-210ENST00000568357 LCE5AQ5TCM9 118 aa5.58□□□□□ -1.52
VPS39-210ENST00000568357 C10orf95Q9H7T3 257 aa5.54□□□□□ -1.52
VPS39-210ENST00000568357 KRTAP19-5Q3LI72 72 aa5.53□□□□□ -1.52
VPS39-210ENST00000568357 KRTAP19-3Q7Z4W3 81 aa5.52□□□□□ -1.53
VPS39-210ENST00000568357 HMCN1Q96RW7 5635 aa5.51□□□□□ -1.53
VPS39-210ENST00000568357 AHNAK2Q8IVF2 5795 aa5.49□□□□□ -1.53
VPS39-210ENST00000568357 KRTAP23-1A1A580 65 aa5.48□□□□□ -1.53
VPS39-210ENST00000568357 KRTAP5-10Q6L8G5 202 aa5.47□□□□□ -1.53
VPS39-210ENST00000568357 TNP1P09430 55 aa5.45□□□□□ -1.54
VPS39-210ENST00000568357 UQCR11O14957 56 aa5.44□□□□□ -1.54
VPS39-210ENST00000568357 LCE3AQ5TA76 89 aa5.43□□□□□ -1.54
VPS39-210ENST00000568357 MT1GP13640 62 aa5.4□□□□□ -1.54
VPS39-210ENST00000568357 MT4P47944 62 aa5.39□□□□□ -1.55
VPS39-210ENST00000568357 MT1LQ93083 61 aa5.36□□□□□ -1.55
VPS39-210ENST00000568357 MIR22HGQ0VDD5 57 aa5.33□□□□□ -1.56
VPS39-210ENST00000568357 KRTAP5-7Q6L8G8 165 aa5.32□□□□□ -1.56
VPS39-210ENST00000568357 PP632Q6XCG6 107 aa5.32□□□□□ -1.56
VPS39-210ENST00000568357 MT1MQ8N339 61 aa5.32□□□□□ -1.56
VPS39-210ENST00000568357 PSPHP1O15172 72 aa5.29□□□□□ -1.56
VPS39-210ENST00000568357 Q1T7F1 81 aa5.28□□□□□ -1.56
VPS39-210ENST00000568357 SVIPQ8NHG7 77 aa5.27□□□□□ -1.57
VPS39-210ENST00000568357 V9GYY9 64 aa5.27□□□□□ -1.57
VPS39-210ENST00000568357 KRTAP4-3Q9BYR4 195 aa5.23□□□□□ -1.57
VPS39-210ENST00000568357 KRTAP12-3P60328 96 aa5.22□□□□□ -1.57
VPS39-210ENST00000568357 SPRR5A0A1B0GTR4 108 aa5.18□□□□□ -1.58
VPS39-210ENST00000568357 K7ERS5 55 aa5.18□□□□□ -1.58
VPS39-210ENST00000568357 KRTAP25-1Q3LHN0 102 aa5.18□□□□□ -1.58
VPS39-210ENST00000568357 A6NED7 52 aa5.09□□□□□ -1.59
VPS39-210ENST00000568357 KRTAP5-4Q6L8H1 288 aa5.09□□□□□ -1.59
VPS39-210ENST00000568357 RPS28P62857 69 aaKnown RBP5.06□□□□□ -1.6
VPS39-210ENST00000568357 PCP4P48539 62 aa5.03□□□□□ -1.6
VPS39-210ENST00000568357 KRTAP15-1Q3LI76 137 aa4.98□□□□□ -1.61
VPS39-210ENST00000568357 CDC42SE1Q9NRR8 79 aa4.94□□□□□ -1.62
VPS39-210ENST00000568357 ROMO1P60602 79 aa4.88□□□□□ -1.63
VPS39-210ENST00000568357 KRTAP20-2Q3LI61 65 aa4.87□□□□□ -1.63
VPS39-210ENST00000568357 KRTAP5-5Q701N2 237 aaPredicted RBP4.87□□□□□ -1.63
VPS39-210ENST00000568357 LCE3CQ5T5A8 94 aa4.82□□□□□ -1.64
VPS39-210ENST00000568357 SYNE1Q8NF91 8797 aaKnown RBP4.74□□□□□ -1.65
VPS39-210ENST00000568357 KRTAP12-4P60329 112 aa4.7□□□□□ -1.66
VPS39-210ENST00000568357 AHNAKQ09666 5890 aaKnown RBP4.68□□□□□ -1.66
VPS39-210ENST00000568357 MUC5ACP98088 5654 aa4.65□□□□□ -1.66
VPS39-210ENST00000568357 MUC5BQ9HC84 5762 aaPredicted RBP4.6□□□□□ -1.67
VPS39-210ENST00000568357 A0A0A0MQY5 61 aa4.58□□□□□ -1.68
VPS39-210ENST00000568357 KRTAP9-6A8MVA2 160 aa4.58□□□□□ -1.68
VPS39-210ENST00000568357 MT1AP04731 61 aa4.55□□□□□ -1.68
VPS39-210ENST00000568357 KRTAP6-1Q3LI64 71 aa4.54□□□□□ -1.68
VPS39-210ENST00000568357 KRTAP5-8O75690 187 aa4.52□□□□□ -1.69
VPS39-210ENST00000568357 KRTAP5-2Q701N4 177 aa4.42□□□□□ -1.7
VPS39-210ENST00000568357 BRK1Q8WUW1 75 aa4.42□□□□□ -1.7
VPS39-210ENST00000568357 KRTAP6-2Q3LI66 62 aa4.32□□□□□ -1.72
VPS39-210ENST00000568357 OBSCNQ5VST9 7968 aa4.28□□□□□ -1.72
VPS39-210ENST00000568357 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.26□□□□□ -1.73
VPS39-210ENST00000568357 PMAIP1Q13794 54 aa4.17□□□□□ -1.74
VPS39-210ENST00000568357 MT3P25713 68 aa4.15□□□□□ -1.75
VPS39-210ENST00000568357 PRAC1Q96KF2 57 aa4.04□□□□□ -1.76
VPS39-210ENST00000568357 KRTAP5-1Q6L8H4 278 aa4.03□□□□□ -1.76
VPS39-210ENST00000568357 KRTAP5-11Q6L8G4 156 aa4□□□□□ -1.77
VPS39-210ENST00000568357 PRO0628Q9UI54 55 aa3.86□□□□□ -1.79
VPS39-210ENST00000568357 LCE1EQ5T753 118 aa3.8□□□□□ -1.8
VPS39-210ENST00000568357 KTN1-AS1Q86SY8 53 aa3.69□□□□□ -1.82
VPS39-210ENST00000568357 LCE1FQ5T754 118 aa3.62□□□□□ -1.83
VPS39-210ENST00000568357 LCE1BQ5T7P3 118 aa3.59□□□□□ -1.83
VPS39-210ENST00000568357 KRTAP4-4Q9BYR3 166 aa3.54□□□□□ -1.84
VPS39-210ENST00000568357 LCE1CQ5T751 118 aa3.53□□□□□ -1.84
VPS39-210ENST00000568357 NDUFAF8A1L188 74 aa3.5□□□□□ -1.85
VPS39-210ENST00000568357 LCE3DQ9BYE3 92 aa3.48□□□□□ -1.85
VPS39-210ENST00000568357 LUZP6Q538Z0 58 aa3.34□□□□□ -1.87
VPS39-210ENST00000568357 LCE3EQ5T5B0 92 aa3.28□□□□□ -1.88
VPS39-210ENST00000568357 PHGR1C9JFL3 82 aa3.22□□□□□ -1.89
VPS39-210ENST00000568357 KRTAP21-2Q3LI59 83 aa3□□□□□ -1.93
VPS39-210ENST00000568357 MUC19Q7Z5P9 8384 aa2.68□□□□□ -1.98
VPS39-210ENST00000568357 PRM1P04553 51 aa2.51□□□□□ -2.01
VPS39-210ENST00000568357 KRTAP21-1Q3LI58 79 aa2.41□□□□□ -2.02
VPS39-210ENST00000568357 INE1O15225 51 aa2.26□□□□□ -2.05
VPS39-210ENST00000568357 MUC16Q8WXI7 14507 aa1.82□□□□□ -2.12
Retrieved 78 of 20,778 RNA–protein pairs in 117.8 ms