RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 KRTAP4-3Q9BYR4 195 aa2.82□□□□□ -1.96
VPS39-209ENST00000568029 M0QZ58 72 aa2.81□□□□□ -1.96
VPS39-209ENST00000568029 KRTAP20-1Q3LI63 56 aa2.81□□□□□ -1.96
VPS39-209ENST00000568029 KRTAP6-3Q3LI67 103 aa2.81□□□□□ -1.96
VPS39-209ENST00000568029 P0C880 135 aa2.8□□□□□ -1.96
VPS39-209ENST00000568029 A0A0D9SG42 100 aa2.78□□□□□ -1.96
VPS39-209ENST00000568029 KRTAP13-4Q3LI77 160 aa2.77□□□□□ -1.97
VPS39-209ENST00000568029 MDN1Q9NU22 5596 aa2.75□□□□□ -1.97
VPS39-209ENST00000568029 GPR98Q8WXG9 6306 aa2.74□□□□□ -1.97
VPS39-209ENST00000568029 MT2AP02795 61 aa2.74□□□□□ -1.97
VPS39-209ENST00000568029 MT1FP04733 61 aa2.74□□□□□ -1.97
VPS39-209ENST00000568029 ROMO1P60602 79 aa2.74□□□□□ -1.97
VPS39-209ENST00000568029 R4GN34 69 aa2.73□□□□□ -1.97
VPS39-209ENST00000568029 KRTAP19-6Q3LI70 58 aa2.72□□□□□ -1.97
VPS39-209ENST00000568029 SPINT4Q6UDR6 99 aa2.72□□□□□ -1.97
VPS39-209ENST00000568029 KMT2DO14686 5537 aa2.7□□□□□ -1.98
VPS39-209ENST00000568029 KRTAP12-1P59990 96 aa2.7□□□□□ -1.98
VPS39-209ENST00000568029 LINC01554Q52M75 96 aa2.69□□□□□ -1.98
VPS39-209ENST00000568029 SPRR5A0A1B0GTR4 108 aa2.68□□□□□ -1.98
VPS39-209ENST00000568029 KRTAP25-1Q3LHN0 102 aa2.68□□□□□ -1.98
VPS39-209ENST00000568029 LCE3AQ5TA76 89 aa2.68□□□□□ -1.98
VPS39-209ENST00000568029 CRIPTQ9P021 101 aa2.68□□□□□ -1.98
VPS39-209ENST00000568029 KRTAP5-2Q701N4 177 aa2.67□□□□□ -1.98
VPS39-209ENST00000568029 KRTAP10-10P60014 251 aa2.62□□□□□ -1.99
VPS39-209ENST00000568029 KRTAP2-3P0C7H8 128 aa2.58□□□□□ -2
VPS39-209ENST00000568029 LCE3DQ9BYE3 92 aa2.58□□□□□ -2
VPS39-209ENST00000568029 KRTAP2-4Q9BYR9 128 aa2.58□□□□□ -2
VPS39-209ENST00000568029 PLAC4Q8WY50 150 aa2.55□□□□□ -2
VPS39-209ENST00000568029 SPRR2GQ9BYE4 73 aa2.54□□□□□ -2
VPS39-209ENST00000568029 C10orf95Q9H7T3 257 aa2.54□□□□□ -2
VPS39-209ENST00000568029 PP632Q6XCG6 107 aa2.51□□□□□ -2.01
VPS39-209ENST00000568029 KRTAP5-5Q701N2 237 aaPredicted RBP2.51□□□□□ -2.01
VPS39-209ENST00000568029 TNP1P09430 55 aa2.49□□□□□ -2.01
VPS39-209ENST00000568029 KRTAP2-1Q9BYU5 128 aa2.48□□□□□ -2.01
VPS39-209ENST00000568029 SPRR2EP22531 72 aa2.46□□□□□ -2.02
VPS39-209ENST00000568029 SPRR2BP35325 72 aa2.46□□□□□ -2.02
VPS39-209ENST00000568029 SPRR2AP35326 72 aa2.46□□□□□ -2.02
VPS39-209ENST00000568029 DSTQ03001 7570 aaKnown RBP2.46□□□□□ -2.02
VPS39-209ENST00000568029 KRTAP19-8Q3LI54 63 aa2.45□□□□□ -2.02
VPS39-209ENST00000568029 SPRR2FQ96RM1 72 aa2.41□□□□□ -2.02
VPS39-209ENST00000568029 MT1BP07438 61 aa2.4□□□□□ -2.03
VPS39-209ENST00000568029 LUZP6Q538Z0 58 aa2.38□□□□□ -2.03
VPS39-209ENST00000568029 AHNAK2Q8IVF2 5795 aa2.38□□□□□ -2.03
VPS39-209ENST00000568029 SPRR2DP22532 72 aa2.37□□□□□ -2.03
VPS39-209ENST00000568029 PRO2289Q9P1D8 64 aa2.37□□□□□ -2.03
VPS39-209ENST00000568029 LCE1CQ5T751 118 aa2.35□□□□□ -2.03
VPS39-209ENST00000568029 LCE1BQ5T7P3 118 aa2.35□□□□□ -2.03
VPS39-209ENST00000568029 HMCN1Q96RW7 5635 aa2.34□□□□□ -2.03
VPS39-209ENST00000568029 MT1XP80297 61 aa2.34□□□□□ -2.03
VPS39-209ENST00000568029 KRTAP8-1Q8IUC2 63 aa2.28□□□□□ -2.04
VPS39-209ENST00000568029 KRTAP5-8O75690 187 aa2.25□□□□□ -2.05
VPS39-209ENST00000568029 KRTAP5-10Q6L8G5 202 aa2.24□□□□□ -2.05
VPS39-209ENST00000568029 KRTAP12-3P60328 96 aa2.23□□□□□ -2.05
VPS39-209ENST00000568029 KRTAP5-7Q6L8G8 165 aa2.17□□□□□ -2.06
VPS39-209ENST00000568029 MT4P47944 62 aa2.16□□□□□ -2.06
VPS39-209ENST00000568029 KRTAP19-5Q3LI72 72 aa2.16□□□□□ -2.06
VPS39-209ENST00000568029 KRTAP19-7Q3SYF9 63 aa2.07□□□□□ -2.08
VPS39-209ENST00000568029 AHNAKQ09666 5890 aaKnown RBP2.07□□□□□ -2.08
VPS39-209ENST00000568029 MT1EP04732 61 aa2.04□□□□□ -2.08
VPS39-209ENST00000568029 MT1LQ93083 61 aa2.03□□□□□ -2.08
VPS39-209ENST00000568029 MUC5ACP98088 5654 aa2□□□□□ -2.09
VPS39-209ENST00000568029 MUC5BQ9HC84 5762 aaPredicted RBP1.99□□□□□ -2.09
VPS39-209ENST00000568029 MT1GP13640 62 aa1.97□□□□□ -2.09
VPS39-209ENST00000568029 MUC19Q7Z5P9 8384 aa1.96□□□□□ -2.1
VPS39-209ENST00000568029 KRTAP12-4P60329 112 aa1.96□□□□□ -2.1
VPS39-209ENST00000568029 KRTAP19-3Q7Z4W3 81 aa1.95□□□□□ -2.1
VPS39-209ENST00000568029 INE1O15225 51 aa1.92□□□□□ -2.1
VPS39-209ENST00000568029 MT1MQ8N339 61 aa1.92□□□□□ -2.1
VPS39-209ENST00000568029 KRTAP20-2Q3LI61 65 aa1.9□□□□□ -2.11
VPS39-209ENST00000568029 SYNE1Q8NF91 8797 aaKnown RBP1.87□□□□□ -2.11
VPS39-209ENST00000568029 MT1AP04731 61 aa1.73□□□□□ -2.13
VPS39-209ENST00000568029 KRTAP6-1Q3LI64 71 aa1.69□□□□□ -2.14
VPS39-209ENST00000568029 KRTAP21-2Q3LI59 83 aa1.67□□□□□ -2.14
VPS39-209ENST00000568029 KRTAP6-2Q3LI66 62 aa1.55□□□□□ -2.16
VPS39-209ENST00000568029 PRM1P04553 51 aa1.42□□□□□ -2.18
VPS39-209ENST00000568029 PHGR1C9JFL3 82 aa1.32□□□□□ -2.2
VPS39-209ENST00000568029 KRTAP21-1Q3LI58 79 aa0.95□□□□□ -2.26
VPS39-209ENST00000568029 MUC16Q8WXI7 14507 aa0.88□□□□□ -2.27
Retrieved 78 of 20,778 RNA–protein pairs in 24.2 ms