RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 LCE3AQ5TA76 89 aa6.4□□□□□ -1.38
CLN3-217ENST00000565354 CDC42SE1Q9NRR8 79 aa6.39□□□□□ -1.39
CLN3-217ENST00000565354 KRTAP19-5Q3LI72 72 aa6.38□□□□□ -1.39
CLN3-217ENST00000565354 MT1EP04732 61 aa6.36□□□□□ -1.39
CLN3-217ENST00000565354 KRTAP25-1Q3LHN0 102 aa6.36□□□□□ -1.39
CLN3-217ENST00000565354 SVIPQ8NHG7 77 aa6.32□□□□□ -1.4
CLN3-217ENST00000565354 LCE5AQ5TCM9 118 aa6.31□□□□□ -1.4
CLN3-217ENST00000565354 LCE1DQ5T752 114 aa6.3□□□□□ -1.4
CLN3-217ENST00000565354 PRO0628Q9UI54 55 aa6.3□□□□□ -1.4
CLN3-217ENST00000565354 BRK1Q8WUW1 75 aa6.29□□□□□ -1.4
CLN3-217ENST00000565354 HMCN1Q96RW7 5635 aa6.26□□□□□ -1.41
CLN3-217ENST00000565354 KRTAP19-3Q7Z4W3 81 aa6.26□□□□□ -1.41
CLN3-217ENST00000565354 AHNAK2Q8IVF2 5795 aa6.21□□□□□ -1.42
CLN3-217ENST00000565354 ROMO1P60602 79 aa6.21□□□□□ -1.42
CLN3-217ENST00000565354 KRTAP12-3P60328 96 aa6.17□□□□□ -1.42
CLN3-217ENST00000565354 MT4P47944 62 aa6.16□□□□□ -1.42
CLN3-217ENST00000565354 PP632Q6XCG6 107 aa6.16□□□□□ -1.42
CLN3-217ENST00000565354 MT1GP13640 62 aa6.15□□□□□ -1.42
CLN3-217ENST00000565354 LCE4AQ5TA78 99 aa6.15□□□□□ -1.42
CLN3-217ENST00000565354 KRTAP5-10Q6L8G5 202 aa6.13□□□□□ -1.43
CLN3-217ENST00000565354 MT1LQ93083 61 aa6.13□□□□□ -1.43
CLN3-217ENST00000565354 KRTAP23-1A1A580 65 aa6.11□□□□□ -1.43
CLN3-217ENST00000565354 MT1MQ8N339 61 aa6.04□□□□□ -1.44
CLN3-217ENST00000565354 PMAIP1Q13794 54 aa5.97□□□□□ -1.45
CLN3-217ENST00000565354 KRTAP5-7Q6L8G8 165 aa5.97□□□□□ -1.45
CLN3-217ENST00000565354 KRTAP5-4Q6L8H1 288 aa5.94□□□□□ -1.46
CLN3-217ENST00000565354 KRTAP4-6Q9BYQ5 205 aa5.93□□□□□ -1.46
CLN3-217ENST00000565354 KRTAP15-1Q3LI76 137 aa5.88□□□□□ -1.47
CLN3-217ENST00000565354 KRTAP4-3Q9BYR4 195 aa5.87□□□□□ -1.47
CLN3-217ENST00000565354 KRTAP5-3Q6L8H2 238 aa5.86□□□□□ -1.47
CLN3-217ENST00000565354 KRTAP4-7Q9BYR0 210 aa5.85□□□□□ -1.47
CLN3-217ENST00000565354 KRTAP19-4Q3LI73 84 aa5.83□□□□□ -1.48
CLN3-217ENST00000565354 KTN1-AS1Q86SY8 53 aa5.82□□□□□ -1.48
CLN3-217ENST00000565354 SPRR5A0A1B0GTR4 108 aa5.72□□□□□ -1.49
CLN3-217ENST00000565354 LCE3CQ5T5A8 94 aa5.69□□□□□ -1.5
CLN3-217ENST00000565354 KRTAP20-2Q3LI61 65 aa5.64□□□□□ -1.51
CLN3-217ENST00000565354 LOC100996750A0A140TA64 210 aa5.53□□□□□ -1.52
CLN3-217ENST00000565354 PRAC1Q96KF2 57 aa5.48□□□□□ -1.53
CLN3-217ENST00000565354 KRTAP5-5Q701N2 237 aaPredicted RBP5.46□□□□□ -1.54
CLN3-217ENST00000565354 KRTAP12-4P60329 112 aa5.45□□□□□ -1.54
CLN3-217ENST00000565354 SYNE1Q8NF91 8797 aaKnown RBP5.36□□□□□ -1.55
CLN3-217ENST00000565354 KRTAP9-6A8MVA2 160 aa5.31□□□□□ -1.56
CLN3-217ENST00000565354 KRTAP4-11Q9BYQ6 195 aa5.29□□□□□ -1.56
CLN3-217ENST00000565354 AHNAKQ09666 5890 aaKnown RBP5.28□□□□□ -1.56
CLN3-217ENST00000565354 MT1AP04731 61 aa5.24□□□□□ -1.57
CLN3-217ENST00000565354 MUC5ACP98088 5654 aa5.22□□□□□ -1.57
CLN3-217ENST00000565354 MUC5BQ9HC84 5762 aaPredicted RBP5.19□□□□□ -1.58
CLN3-217ENST00000565354 KRTAP6-1Q3LI64 71 aa5.17□□□□□ -1.58
CLN3-217ENST00000565354 KRTAP5-8O75690 187 aa5.12□□□□□ -1.59
CLN3-217ENST00000565354 KRTAP5-2Q701N4 177 aa5.11□□□□□ -1.59
CLN3-217ENST00000565354 KRTAP9-4Q9BYQ2 154 aa5.02□□□□□ -1.61
CLN3-217ENST00000565354 KRTAP9-9Q9BYP9 154 aa4.95□□□□□ -1.62
CLN3-217ENST00000565354 OBSCNQ5VST9 7968 aa4.95□□□□□ -1.62
CLN3-217ENST00000565354 KRTAP6-2Q3LI66 62 aa4.89□□□□□ -1.63
CLN3-217ENST00000565354 MT3P25713 68 aa4.8□□□□□ -1.64
CLN3-217ENST00000565354 KRTAP5-1Q6L8H4 278 aa4.68□□□□□ -1.66
CLN3-217ENST00000565354 LUZP6Q538Z0 58 aa4.6□□□□□ -1.67
CLN3-217ENST00000565354 NDUFAF8A1L188 74 aa4.51□□□□□ -1.69
CLN3-217ENST00000565354 H3BS24 57 aa4.39□□□□□ -1.71
CLN3-217ENST00000565354 LCE1EQ5T753 118 aa4.29□□□□□ -1.72
CLN3-217ENST00000565354 LCE3DQ9BYE3 92 aa4.19□□□□□ -1.74
CLN3-217ENST00000565354 A0A0A0MQY5 61 aa4.15□□□□□ -1.75
CLN3-217ENST00000565354 KRTAP4-2Q9BYR5 136 aa4.1□□□□□ -1.75
CLN3-217ENST00000565354 LCE1BQ5T7P3 118 aa4.08□□□□□ -1.76
CLN3-217ENST00000565354 LCE3EQ5T5B0 92 aa4.01□□□□□ -1.77
CLN3-217ENST00000565354 LCE1CQ5T751 118 aa3.98□□□□□ -1.77
CLN3-217ENST00000565354 KRTAP4-12Q9BQ66 201 aa3.91□□□□□ -1.78
CLN3-217ENST00000565354 INE1O15225 51 aa3.84□□□□□ -1.79
CLN3-217ENST00000565354 KRTAP5-11Q6L8G4 156 aa3.73□□□□□ -1.81
CLN3-217ENST00000565354 LCE1FQ5T754 118 aa3.68□□□□□ -1.82
CLN3-217ENST00000565354 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.63□□□□□ -1.83
CLN3-217ENST00000565354 PHGR1C9JFL3 82 aa3.59□□□□□ -1.83
CLN3-217ENST00000565354 KRTAP21-2Q3LI59 83 aa3.38□□□□□ -1.87
CLN3-217ENST00000565354 PRM1P04553 51 aa3.2□□□□□ -1.9
CLN3-217ENST00000565354 MUC19Q7Z5P9 8384 aa3.12□□□□□ -1.91
CLN3-217ENST00000565354 KRTAP4-4Q9BYR3 166 aa3.09□□□□□ -1.91
CLN3-217ENST00000565354 KRTAP21-1Q3LI58 79 aa2.74□□□□□ -1.97
CLN3-217ENST00000565354 MUC16Q8WXI7 14507 aa2.16□□□□□ -2.06
Retrieved 78 of 20,778 RNA–protein pairs in 69.4 ms