RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 KRTAP5-10Q6L8G5 202 aa5.88□□□□□ -1.47
CLN3-216ENST00000565316 KRTAP4-6Q9BYQ5 205 aa5.88□□□□□ -1.47
CLN3-216ENST00000565316 A0A1B0GU69 56 aa5.87□□□□□ -1.47
CLN3-216ENST00000565316 KRTAP4-7Q9BYR0 210 aa5.74□□□□□ -1.49
CLN3-216ENST00000565316 ANAPC13Q9BS18 74 aa5.74□□□□□ -1.49
CLN3-216ENST00000565316 CCDC179H3BU77 68 aa5.73□□□□□ -1.49
CLN3-216ENST00000565316 KRTAP12-3P60328 96 aa5.73□□□□□ -1.49
CLN3-216ENST00000565316 KRTAP5-7Q6L8G8 165 aa5.69□□□□□ -1.5
CLN3-216ENST00000565316 KRTAP5-3Q6L8H2 238 aa5.68□□□□□ -1.5
CLN3-216ENST00000565316 KRTAP20-2Q3LI61 65 aa5.65□□□□□ -1.51
CLN3-216ENST00000565316 KRTAP5-5Q701N2 237 aaPredicted RBP5.65□□□□□ -1.51
CLN3-216ENST00000565316 PRR15LQ9BU68 103 aa5.63□□□□□ -1.51
CLN3-216ENST00000565316 LINC01558Q9Y6Z2 57 aa5.63□□□□□ -1.51
CLN3-216ENST00000565316 SPRR5A0A1B0GTR4 108 aa5.61□□□□□ -1.51
CLN3-216ENST00000565316 ATP5EP56381 51 aaPredicted RBP5.56□□□□□ -1.52
CLN3-216ENST00000565316 KRTAP12-4P60329 112 aa5.52□□□□□ -1.53
CLN3-216ENST00000565316 SYNE1Q8NF91 8797 aaKnown RBP5.49□□□□□ -1.53
CLN3-216ENST00000565316 LOC100996750A0A140TA64 210 aa5.46□□□□□ -1.54
CLN3-216ENST00000565316 PCP4P48539 62 aa5.46□□□□□ -1.54
CLN3-216ENST00000565316 UQCR11O14957 56 aa5.45□□□□□ -1.54
CLN3-216ENST00000565316 KRTAP25-1Q3LHN0 102 aa5.45□□□□□ -1.54
CLN3-216ENST00000565316 KRTAP19-4Q3LI73 84 aa5.44□□□□□ -1.54
CLN3-216ENST00000565316 TMEM258P61165 79 aa5.41□□□□□ -1.54
CLN3-216ENST00000565316 MIR22HGQ0VDD5 57 aa5.31□□□□□ -1.56
CLN3-216ENST00000565316 KRTAP15-1Q3LI76 137 aa5.27□□□□□ -1.57
CLN3-216ENST00000565316 KRTAP23-1A1A580 65 aa5.26□□□□□ -1.57
CLN3-216ENST00000565316 LCE3CQ5T5A8 94 aa5.25□□□□□ -1.57
CLN3-216ENST00000565316 K7ERS5 55 aa5.23□□□□□ -1.57
CLN3-216ENST00000565316 KRTAP5-2Q701N4 177 aa5.22□□□□□ -1.57
CLN3-216ENST00000565316 KRTAP4-11Q9BYQ6 195 aa5.22□□□□□ -1.57
CLN3-216ENST00000565316 PSPHP1O15172 72 aa5.18□□□□□ -1.58
CLN3-216ENST00000565316 MT1AP04731 61 aa5.17□□□□□ -1.58
CLN3-216ENST00000565316 Q1T7F1 81 aa5.17□□□□□ -1.58
CLN3-216ENST00000565316 KRTAP6-1Q3LI64 71 aa5.15□□□□□ -1.59
CLN3-216ENST00000565316 V9GYY9 64 aa5.1□□□□□ -1.59
CLN3-216ENST00000565316 KRTAP5-8O75690 187 aa5.05□□□□□ -1.6
CLN3-216ENST00000565316 AHNAKQ09666 5890 aaKnown RBP5.05□□□□□ -1.6
CLN3-216ENST00000565316 MUC5BQ9HC84 5762 aaPredicted RBP5.03□□□□□ -1.6
CLN3-216ENST00000565316 KRTAP9-4Q9BYQ2 154 aa5.02□□□□□ -1.61
CLN3-216ENST00000565316 MUC5ACP98088 5654 aa4.99□□□□□ -1.61
CLN3-216ENST00000565316 KRTAP9-6A8MVA2 160 aa4.98□□□□□ -1.61
CLN3-216ENST00000565316 KRTAP6-2Q3LI66 62 aa4.97□□□□□ -1.61
CLN3-216ENST00000565316 A6NED7 52 aa4.93□□□□□ -1.62
CLN3-216ENST00000565316 CDC42SE1Q9NRR8 79 aa4.92□□□□□ -1.62
CLN3-216ENST00000565316 RPS28P62857 69 aaKnown RBP4.87□□□□□ -1.63
CLN3-216ENST00000565316 OBSCNQ5VST9 7968 aa4.87□□□□□ -1.63
CLN3-216ENST00000565316 ROMO1P60602 79 aa4.86□□□□□ -1.63
CLN3-216ENST00000565316 KRTAP9-9Q9BYP9 154 aa4.81□□□□□ -1.64
CLN3-216ENST00000565316 H3BS24 57 aa4.77□□□□□ -1.65
CLN3-216ENST00000565316 MT3P25713 68 aa4.73□□□□□ -1.65
CLN3-216ENST00000565316 KRTAP5-1Q6L8H4 278 aa4.72□□□□□ -1.65
CLN3-216ENST00000565316 PRO0628Q9UI54 55 aa4.51□□□□□ -1.69
CLN3-216ENST00000565316 LCE1EQ5T753 118 aa4.44□□□□□ -1.7
CLN3-216ENST00000565316 A0A0A0MQY5 61 aa4.41□□□□□ -1.7
CLN3-216ENST00000565316 PMAIP1Q13794 54 aa4.27□□□□□ -1.73
CLN3-216ENST00000565316 KRTAP4-2Q9BYR5 136 aa4.21□□□□□ -1.74
CLN3-216ENST00000565316 LCE1BQ5T7P3 118 aa4.14□□□□□ -1.75
CLN3-216ENST00000565316 BRK1Q8WUW1 75 aa4.14□□□□□ -1.75
CLN3-216ENST00000565316 LCE1CQ5T751 118 aa4.11□□□□□ -1.75
CLN3-216ENST00000565316 KTN1-AS1Q86SY8 53 aa4.07□□□□□ -1.76
CLN3-216ENST00000565316 KRTAP4-12Q9BQ66 201 aa3.86□□□□□ -1.79
CLN3-216ENST00000565316 PRAC1Q96KF2 57 aa3.81□□□□□ -1.8
CLN3-216ENST00000565316 KRTAP5-11Q6L8G4 156 aa3.74□□□□□ -1.81
CLN3-216ENST00000565316 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.72□□□□□ -1.81
CLN3-216ENST00000565316 LCE3DQ9BYE3 92 aa3.72□□□□□ -1.81
CLN3-216ENST00000565316 LCE1FQ5T754 118 aa3.7□□□□□ -1.82
CLN3-216ENST00000565316 LCE3EQ5T5B0 92 aa3.46□□□□□ -1.85
CLN3-216ENST00000565316 KRTAP21-2Q3LI59 83 aa3.42□□□□□ -1.86
CLN3-216ENST00000565316 PHGR1C9JFL3 82 aa3.41□□□□□ -1.86
CLN3-216ENST00000565316 LUZP6Q538Z0 58 aa3.36□□□□□ -1.87
CLN3-216ENST00000565316 NDUFAF8A1L188 74 aa3.28□□□□□ -1.88
CLN3-216ENST00000565316 KRTAP4-4Q9BYR3 166 aa3.13□□□□□ -1.91
CLN3-216ENST00000565316 MUC19Q7Z5P9 8384 aa3.04□□□□□ -1.92
CLN3-216ENST00000565316 INE1O15225 51 aa2.82□□□□□ -1.96
CLN3-216ENST00000565316 KRTAP21-1Q3LI58 79 aa2.61□□□□□ -1.99
CLN3-216ENST00000565316 PRM1P04553 51 aa2.49□□□□□ -2.01
CLN3-216ENST00000565316 MUC16Q8WXI7 14507 aa2.17□□□□□ -2.06
Retrieved 77 of 20,778 RNA–protein pairs in 244.3 ms