RNA–Protein interactions for RNA: ENST00000564409.1

SPG7-210, Transcript of SPG7, paraplegin matrix AAA peptidase subunit, humanhuman

TSL 3

Gene SPG7, Length 717 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG7-210ENST00000564409 A8MU10 97 aa5.28□□□□□ -1.56
SPG7-210ENST00000564409 C10orf95Q9H7T3 257 aa5.26□□□□□ -1.57
SPG7-210ENST00000564409 LCE3AQ5TA76 89 aa5.25□□□□□ -1.57
SPG7-210ENST00000564409 MT4P47944 62 aa5.21□□□□□ -1.58
SPG7-210ENST00000564409 UQCR11O14957 56 aa5.19□□□□□ -1.58
SPG7-210ENST00000564409 KRTAP5-4Q6L8H1 288 aa5.19□□□□□ -1.58
SPG7-210ENST00000564409 HMCN1Q96RW7 5635 aa5.19□□□□□ -1.58
SPG7-210ENST00000564409 V9GYY9 64 aa5.17□□□□□ -1.58
SPG7-210ENST00000564409 KRTAP4-3Q9BYR4 195 aa5.14□□□□□ -1.59
SPG7-210ENST00000564409 KRTAP12-3P60328 96 aa5.1□□□□□ -1.59
SPG7-210ENST00000564409 KRTAP5-10Q6L8G5 202 aa5.1□□□□□ -1.59
SPG7-210ENST00000564409 Q1T7F1 81 aa5.08□□□□□ -1.6
SPG7-210ENST00000564409 AHNAK2Q8IVF2 5795 aa5.07□□□□□ -1.6
SPG7-210ENST00000564409 MIR22HGQ0VDD5 57 aa5.07□□□□□ -1.6
SPG7-210ENST00000564409 PCP4P48539 62 aa5.06□□□□□ -1.6
SPG7-210ENST00000564409 KRTAP4-6Q9BYQ5 205 aa5.05□□□□□ -1.6
SPG7-210ENST00000564409 PSPHP1O15172 72 aa5.04□□□□□ -1.6
SPG7-210ENST00000564409 K7ERS5 55 aa5.01□□□□□ -1.61
SPG7-210ENST00000564409 RPS28P62857 69 aaKnown RBP5□□□□□ -1.61
SPG7-210ENST00000564409 KRTAP4-7Q9BYR0 210 aa4.99□□□□□ -1.61
SPG7-210ENST00000564409 KRTAP25-1Q3LHN0 102 aa4.97□□□□□ -1.61
SPG7-210ENST00000564409 KRTAP19-4Q3LI73 84 aa4.94□□□□□ -1.62
SPG7-210ENST00000564409 KRTAP5-7Q6L8G8 165 aa4.94□□□□□ -1.62
SPG7-210ENST00000564409 A6NED7 52 aa4.92□□□□□ -1.62
SPG7-210ENST00000564409 SPRR5A0A1B0GTR4 108 aa4.91□□□□□ -1.62
SPG7-210ENST00000564409 KRTAP5-5Q701N2 237 aaPredicted RBP4.91□□□□□ -1.62
SPG7-210ENST00000564409 KRTAP5-3Q6L8H2 238 aa4.9□□□□□ -1.63
SPG7-210ENST00000564409 KRTAP20-2Q3LI61 65 aa4.88□□□□□ -1.63
SPG7-210ENST00000564409 KRTAP12-4P60329 112 aa4.87□□□□□ -1.63
SPG7-210ENST00000564409 KRTAP23-1A1A580 65 aa4.82□□□□□ -1.64
SPG7-210ENST00000564409 LOC100996750A0A140TA64 210 aa4.74□□□□□ -1.65
SPG7-210ENST00000564409 KRTAP15-1Q3LI76 137 aa4.73□□□□□ -1.65
SPG7-210ENST00000564409 CDC42SE1Q9NRR8 79 aa4.72□□□□□ -1.65
SPG7-210ENST00000564409 LCE3CQ5T5A8 94 aa4.68□□□□□ -1.66
SPG7-210ENST00000564409 ROMO1P60602 79 aa4.65□□□□□ -1.67
SPG7-210ENST00000564409 SYNE1Q8NF91 8797 aaKnown RBP4.64□□□□□ -1.67
SPG7-210ENST00000564409 MT1AP04731 61 aa4.55□□□□□ -1.68
SPG7-210ENST00000564409 KRTAP5-2Q701N4 177 aa4.52□□□□□ -1.69
SPG7-210ENST00000564409 KRTAP4-11Q9BYQ6 195 aa4.5□□□□□ -1.69
SPG7-210ENST00000564409 KRTAP6-1Q3LI64 71 aa4.49□□□□□ -1.69
SPG7-210ENST00000564409 KRTAP9-4Q9BYQ2 154 aa4.41□□□□□ -1.7
SPG7-210ENST00000564409 BRK1Q8WUW1 75 aa4.4□□□□□ -1.71
SPG7-210ENST00000564409 KRTAP9-6A8MVA2 160 aa4.36□□□□□ -1.71
SPG7-210ENST00000564409 KRTAP5-8O75690 187 aa4.36□□□□□ -1.71
SPG7-210ENST00000564409 KRTAP6-2Q3LI66 62 aa4.32□□□□□ -1.72
SPG7-210ENST00000564409 MUC5ACP98088 5654 aa4.28□□□□□ -1.72
SPG7-210ENST00000564409 AHNAKQ09666 5890 aaKnown RBP4.24□□□□□ -1.73
SPG7-210ENST00000564409 MUC5BQ9HC84 5762 aaPredicted RBP4.21□□□□□ -1.74
SPG7-210ENST00000564409 OBSCNQ5VST9 7968 aa4.21□□□□□ -1.74
SPG7-210ENST00000564409 MT3P25713 68 aa4.19□□□□□ -1.74
SPG7-210ENST00000564409 PMAIP1Q13794 54 aa4.17□□□□□ -1.74
SPG7-210ENST00000564409 KRTAP9-9Q9BYP9 154 aa4.17□□□□□ -1.74
SPG7-210ENST00000564409 KRTAP5-1Q6L8H4 278 aa4.06□□□□□ -1.76
SPG7-210ENST00000564409 H3BS24 57 aa4.02□□□□□ -1.77
SPG7-210ENST00000564409 PRO0628Q9UI54 55 aa4□□□□□ -1.77
SPG7-210ENST00000564409 A0A0A0MQY5 61 aa3.98□□□□□ -1.77
SPG7-210ENST00000564409 PRAC1Q96KF2 57 aa3.92□□□□□ -1.78
SPG7-210ENST00000564409 LCE1EQ5T753 118 aa3.91□□□□□ -1.78
SPG7-210ENST00000564409 KTN1-AS1Q86SY8 53 aa3.77□□□□□ -1.81
SPG7-210ENST00000564409 KRTAP4-2Q9BYR5 136 aa3.64□□□□□ -1.83
SPG7-210ENST00000564409 LCE1CQ5T751 118 aa3.61□□□□□ -1.83
SPG7-210ENST00000564409 LCE1BQ5T7P3 118 aa3.61□□□□□ -1.83
SPG7-210ENST00000564409 LUZP6Q538Z0 58 aa3.39□□□□□ -1.87
SPG7-210ENST00000564409 LCE3DQ9BYE3 92 aa3.37□□□□□ -1.87
SPG7-210ENST00000564409 KRTAP4-12Q9BQ66 201 aa3.31□□□□□ -1.88
SPG7-210ENST00000564409 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.28□□□□□ -1.88
SPG7-210ENST00000564409 KRTAP5-11Q6L8G4 156 aa3.27□□□□□ -1.89
SPG7-210ENST00000564409 LCE1FQ5T754 118 aa3.26□□□□□ -1.89
SPG7-210ENST00000564409 LCE3EQ5T5B0 92 aa3.14□□□□□ -1.91
SPG7-210ENST00000564409 KRTAP21-2Q3LI59 83 aa2.97□□□□□ -1.93
SPG7-210ENST00000564409 NDUFAF8A1L188 74 aa2.94□□□□□ -1.94
SPG7-210ENST00000564409 PHGR1C9JFL3 82 aa2.93□□□□□ -1.94
SPG7-210ENST00000564409 KRTAP4-4Q9BYR3 166 aa2.7□□□□□ -1.98
SPG7-210ENST00000564409 MUC19Q7Z5P9 8384 aa2.61□□□□□ -1.99
SPG7-210ENST00000564409 INE1O15225 51 aa2.51□□□□□ -2.01
SPG7-210ENST00000564409 PRM1P04553 51 aa2.36□□□□□ -2.03
SPG7-210ENST00000564409 KRTAP21-1Q3LI58 79 aa2.25□□□□□ -2.05
SPG7-210ENST00000564409 MUC16Q8WXI7 14507 aa1.85□□□□□ -2.11
Retrieved 78 of 20,778 RNA–protein pairs in 116.1 ms