RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 KRTAP5-3Q6L8H2 238 aa5.07□□□□□ -1.6
CLK3-213ENST00000563842 DSTQ03001 7570 aaKnown RBP5.05□□□□□ -1.6
CLK3-213ENST00000563842 UQCR11O14957 56 aa5.04□□□□□ -1.6
CLK3-213ENST00000563842 KRTAP19-4Q3LI73 84 aa5.02□□□□□ -1.61
CLK3-213ENST00000563842 KRTAP19-7Q3SYF9 63 aa5□□□□□ -1.61
CLK3-213ENST00000563842 TNP1P09430 55 aa4.99□□□□□ -1.61
CLK3-213ENST00000563842 MT1EP04732 61 aa4.97□□□□□ -1.61
CLK3-213ENST00000563842 C10orf95Q9H7T3 257 aa4.95□□□□□ -1.62
CLK3-213ENST00000563842 V9GYY9 64 aa4.95□□□□□ -1.62
CLK3-213ENST00000563842 KRTAP19-3Q7Z4W3 81 aa4.93□□□□□ -1.62
CLK3-213ENST00000563842 MIR22HGQ0VDD5 57 aa4.91□□□□□ -1.62
CLK3-213ENST00000563842 KRTAP19-5Q3LI72 72 aa4.91□□□□□ -1.62
CLK3-213ENST00000563842 K7ERS5 55 aa4.87□□□□□ -1.63
CLK3-213ENST00000563842 Q1T7F1 81 aa4.87□□□□□ -1.63
CLK3-213ENST00000563842 MT1GP13640 62 aa4.85□□□□□ -1.63
CLK3-213ENST00000563842 LCE3AQ5TA76 89 aa4.85□□□□□ -1.63
CLK3-213ENST00000563842 PSPHP1O15172 72 aa4.84□□□□□ -1.63
CLK3-213ENST00000563842 PP632Q6XCG6 107 aa4.84□□□□□ -1.63
CLK3-213ENST00000563842 KRTAP5-10Q6L8G5 202 aa4.83□□□□□ -1.64
CLK3-213ENST00000563842 AHNAK2Q8IVF2 5795 aa4.82□□□□□ -1.64
CLK3-213ENST00000563842 KRTAP5-7Q6L8G8 165 aa4.79□□□□□ -1.64
CLK3-213ENST00000563842 HMCN1Q96RW7 5635 aa4.77□□□□□ -1.65
CLK3-213ENST00000563842 MT1LQ93083 61 aa4.76□□□□□ -1.65
CLK3-213ENST00000563842 KRTAP25-1Q3LHN0 102 aa4.75□□□□□ -1.65
CLK3-213ENST00000563842 MT1MQ8N339 61 aa4.73□□□□□ -1.65
CLK3-213ENST00000563842 A6NED7 52 aa4.71□□□□□ -1.66
CLK3-213ENST00000563842 RPS28P62857 69 aaKnown RBP4.71□□□□□ -1.66
CLK3-213ENST00000563842 KRTAP12-3P60328 96 aa4.7□□□□□ -1.66
CLK3-213ENST00000563842 SPRR5A0A1B0GTR4 108 aa4.69□□□□□ -1.66
CLK3-213ENST00000563842 PCP4P48539 62 aa4.68□□□□□ -1.66
CLK3-213ENST00000563842 KRTAP23-1A1A580 65 aa4.6□□□□□ -1.67
CLK3-213ENST00000563842 CDC42SE1Q9NRR8 79 aa4.58□□□□□ -1.68
CLK3-213ENST00000563842 KRTAP4-3Q9BYR4 195 aa4.56□□□□□ -1.68
CLK3-213ENST00000563842 MT4P47944 62 aa4.53□□□□□ -1.68
CLK3-213ENST00000563842 ROMO1P60602 79 aa4.49□□□□□ -1.69
CLK3-213ENST00000563842 KRTAP5-4Q6L8H1 288 aa4.45□□□□□ -1.7
CLK3-213ENST00000563842 KRTAP15-1Q3LI76 137 aa4.44□□□□□ -1.7
CLK3-213ENST00000563842 LCE3CQ5T5A8 94 aa4.34□□□□□ -1.71
CLK3-213ENST00000563842 AHNAKQ09666 5890 aaKnown RBP4.32□□□□□ -1.72
CLK3-213ENST00000563842 KRTAP5-5Q701N2 237 aaPredicted RBP4.31□□□□□ -1.72
CLK3-213ENST00000563842 KRTAP12-4P60329 112 aa4.25□□□□□ -1.73
CLK3-213ENST00000563842 KRTAP20-2Q3LI61 65 aa4.19□□□□□ -1.74
CLK3-213ENST00000563842 MUC5ACP98088 5654 aa4.17□□□□□ -1.74
CLK3-213ENST00000563842 BRK1Q8WUW1 75 aa4.13□□□□□ -1.75
CLK3-213ENST00000563842 MUC5BQ9HC84 5762 aaPredicted RBP4.09□□□□□ -1.76
CLK3-213ENST00000563842 MT1AP04731 61 aa4.07□□□□□ -1.76
CLK3-213ENST00000563842 SYNE1Q8NF91 8797 aaKnown RBP4.06□□□□□ -1.76
CLK3-213ENST00000563842 KRTAP9-6A8MVA2 160 aa4.02□□□□□ -1.77
CLK3-213ENST00000563842 KRTAP6-1Q3LI64 71 aa4.02□□□□□ -1.77
CLK3-213ENST00000563842 A0A0A0MQY5 61 aa3.98□□□□□ -1.77
CLK3-213ENST00000563842 KRTAP5-2Q701N4 177 aa3.91□□□□□ -1.78
CLK3-213ENST00000563842 PMAIP1Q13794 54 aa3.9□□□□□ -1.79
CLK3-213ENST00000563842 KRTAP5-8O75690 187 aa3.87□□□□□ -1.79
CLK3-213ENST00000563842 KRTAP6-2Q3LI66 62 aa3.82□□□□□ -1.8
CLK3-213ENST00000563842 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.76□□□□□ -1.81
CLK3-213ENST00000563842 MT3P25713 68 aa3.75□□□□□ -1.81
CLK3-213ENST00000563842 PRO0628Q9UI54 55 aa3.74□□□□□ -1.81
CLK3-213ENST00000563842 PRAC1Q96KF2 57 aa3.68□□□□□ -1.82
CLK3-213ENST00000563842 OBSCNQ5VST9 7968 aa3.61□□□□□ -1.83
CLK3-213ENST00000563842 KRTAP5-11Q6L8G4 156 aa3.56□□□□□ -1.84
CLK3-213ENST00000563842 KTN1-AS1Q86SY8 53 aa3.49□□□□□ -1.85
CLK3-213ENST00000563842 KRTAP5-1Q6L8H4 278 aa3.48□□□□□ -1.85
CLK3-213ENST00000563842 LCE1EQ5T753 118 aa3.42□□□□□ -1.86
CLK3-213ENST00000563842 LUZP6Q538Z0 58 aa3.21□□□□□ -1.9
CLK3-213ENST00000563842 LCE1BQ5T7P3 118 aa3.18□□□□□ -1.9
CLK3-213ENST00000563842 LCE1CQ5T751 118 aa3.16□□□□□ -1.9
CLK3-213ENST00000563842 LCE3DQ9BYE3 92 aa3.16□□□□□ -1.9
CLK3-213ENST00000563842 KRTAP4-4Q9BYR3 166 aa3.11□□□□□ -1.91
CLK3-213ENST00000563842 NDUFAF8A1L188 74 aa3.02□□□□□ -1.93
CLK3-213ENST00000563842 LCE3EQ5T5B0 92 aa3□□□□□ -1.93
CLK3-213ENST00000563842 LCE1FQ5T754 118 aa2.93□□□□□ -1.94
CLK3-213ENST00000563842 PHGR1C9JFL3 82 aa2.86□□□□□ -1.95
CLK3-213ENST00000563842 KRTAP21-2Q3LI59 83 aa2.64□□□□□ -1.99
CLK3-213ENST00000563842 INE1O15225 51 aa2.46□□□□□ -2.02
CLK3-213ENST00000563842 PRM1P04553 51 aa2.27□□□□□ -2.05
CLK3-213ENST00000563842 MUC19Q7Z5P9 8384 aa2.27□□□□□ -2.05
CLK3-213ENST00000563842 KRTAP21-1Q3LI58 79 aa2.24□□□□□ -2.05
CLK3-213ENST00000563842 MUC16Q8WXI7 14507 aa1.6□□□□□ -2.15
Retrieved 78 of 20,778 RNA–protein pairs in 160.8 ms