RNA–Protein interactions for RNA: ENST00000562298.1

VPS9D1-AS1-201, VPS9D1 antisense RNA 1, humanhuman

TSL 1 (best)

Gene VPS9D1-AS1, Length 931 nt, Biotype antisense RNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-AS1-201ENST00000562298 TNP1P09430 55 aa5.67□□□□□ -1.5
VPS9D1-AS1-201ENST00000562298 KRTAP4-7Q9BYR0 210 aa5.65□□□□□ -1.5
VPS9D1-AS1-201ENST00000562298 A0A1B0GU69 56 aa5.64□□□□□ -1.51
VPS9D1-AS1-201ENST00000562298 H7BZZ5 65 aa5.64□□□□□ -1.51
VPS9D1-AS1-201ENST00000562298 COX7CP15954 63 aa5.63□□□□□ -1.51
VPS9D1-AS1-201ENST00000562298 KRTAP5-7Q6L8G8 165 aa5.59□□□□□ -1.51
VPS9D1-AS1-201ENST00000562298 KRTAP5-3Q6L8H2 238 aa5.59□□□□□ -1.51
VPS9D1-AS1-201ENST00000562298 KRTAP12-3P60328 96 aa5.54□□□□□ -1.52
VPS9D1-AS1-201ENST00000562298 KRTAP20-2Q3LI61 65 aa5.54□□□□□ -1.52
VPS9D1-AS1-201ENST00000562298 ANAPC13Q9BS18 74 aa5.53□□□□□ -1.52
VPS9D1-AS1-201ENST00000562298 KRTAP5-5Q701N2 237 aaPredicted RBP5.52□□□□□ -1.53
VPS9D1-AS1-201ENST00000562298 SPRR5A0A1B0GTR4 108 aa5.46□□□□□ -1.54
VPS9D1-AS1-201ENST00000562298 SYNE1Q8NF91 8797 aaKnown RBP5.41□□□□□ -1.54
VPS9D1-AS1-201ENST00000562298 KRTAP12-4P60329 112 aa5.38□□□□□ -1.55
VPS9D1-AS1-201ENST00000562298 LOC100996750A0A140TA64 210 aa5.36□□□□□ -1.55
VPS9D1-AS1-201ENST00000562298 PRR15LQ9BU68 103 aa5.36□□□□□ -1.55
VPS9D1-AS1-201ENST00000562298 CCDC179H3BU77 68 aa5.34□□□□□ -1.55
VPS9D1-AS1-201ENST00000562298 LINC01558Q9Y6Z2 57 aa5.28□□□□□ -1.56
VPS9D1-AS1-201ENST00000562298 TMEM258P61165 79 aa5.27□□□□□ -1.57
VPS9D1-AS1-201ENST00000562298 KRTAP25-1Q3LHN0 102 aa5.22□□□□□ -1.57
VPS9D1-AS1-201ENST00000562298 ATP5EP56381 51 aaPredicted RBP5.21□□□□□ -1.58
VPS9D1-AS1-201ENST00000562298 UQCR11O14957 56 aa5.19□□□□□ -1.58
VPS9D1-AS1-201ENST00000562298 RPS28P62857 69 aaKnown RBP5.17□□□□□ -1.58
VPS9D1-AS1-201ENST00000562298 KRTAP19-4Q3LI73 84 aa5.16□□□□□ -1.58
VPS9D1-AS1-201ENST00000562298 KRTAP4-11Q9BYQ6 195 aa5.11□□□□□ -1.59
VPS9D1-AS1-201ENST00000562298 KRTAP5-2Q701N4 177 aa5.09□□□□□ -1.59
VPS9D1-AS1-201ENST00000562298 KRTAP15-1Q3LI76 137 aa5.08□□□□□ -1.6
VPS9D1-AS1-201ENST00000562298 LCE3CQ5T5A8 94 aa5.08□□□□□ -1.6
VPS9D1-AS1-201ENST00000562298 MIR22HGQ0VDD5 57 aa5.06□□□□□ -1.6
VPS9D1-AS1-201ENST00000562298 KRTAP6-1Q3LI64 71 aa5.03□□□□□ -1.6
VPS9D1-AS1-201ENST00000562298 MT1AP04731 61 aa5.02□□□□□ -1.61
VPS9D1-AS1-201ENST00000562298 KRTAP23-1A1A580 65 aa5□□□□□ -1.61
VPS9D1-AS1-201ENST00000562298 K7ERS5 55 aa4.97□□□□□ -1.61
VPS9D1-AS1-201ENST00000562298 KRTAP5-8O75690 187 aa4.97□□□□□ -1.61
VPS9D1-AS1-201ENST00000562298 OBSCNQ5VST9 7968 aa4.9□□□□□ -1.62
VPS9D1-AS1-201ENST00000562298 MUC5ACP98088 5654 aa4.9□□□□□ -1.63
VPS9D1-AS1-201ENST00000562298 KRTAP9-4Q9BYQ2 154 aa4.89□□□□□ -1.63
VPS9D1-AS1-201ENST00000562298 V9GYY9 64 aa4.89□□□□□ -1.63
VPS9D1-AS1-201ENST00000562298 MUC5BQ9HC84 5762 aaPredicted RBP4.88□□□□□ -1.63
VPS9D1-AS1-201ENST00000562298 AHNAKQ09666 5890 aaKnown RBP4.88□□□□□ -1.63
VPS9D1-AS1-201ENST00000562298 KRTAP9-6A8MVA2 160 aa4.85□□□□□ -1.63
VPS9D1-AS1-201ENST00000562298 Q1T7F1 81 aa4.85□□□□□ -1.63
VPS9D1-AS1-201ENST00000562298 KRTAP6-2Q3LI66 62 aa4.85□□□□□ -1.63
VPS9D1-AS1-201ENST00000562298 PSPHP1O15172 72 aa4.81□□□□□ -1.64
VPS9D1-AS1-201ENST00000562298 KRTAP9-9Q9BYP9 154 aa4.71□□□□□ -1.66
VPS9D1-AS1-201ENST00000562298 CDC42SE1Q9NRR8 79 aa4.7□□□□□ -1.66
VPS9D1-AS1-201ENST00000562298 PRO0628Q9UI54 55 aa4.64□□□□□ -1.67
VPS9D1-AS1-201ENST00000562298 ROMO1P60602 79 aa4.62□□□□□ -1.67
VPS9D1-AS1-201ENST00000562298 A6NED7 52 aa4.61□□□□□ -1.67
VPS9D1-AS1-201ENST00000562298 KRTAP5-1Q6L8H4 278 aa4.61□□□□□ -1.67
VPS9D1-AS1-201ENST00000562298 MT3P25713 68 aa4.59□□□□□ -1.67
VPS9D1-AS1-201ENST00000562298 BRK1Q8WUW1 75 aa4.59□□□□□ -1.67
VPS9D1-AS1-201ENST00000562298 SVIPQ8NHG7 77 aa4.58□□□□□ -1.68
VPS9D1-AS1-201ENST00000562298 PMAIP1Q13794 54 aa4.37□□□□□ -1.71
VPS9D1-AS1-201ENST00000562298 LCE1EQ5T753 118 aa4.28□□□□□ -1.72
VPS9D1-AS1-201ENST00000562298 KTN1-AS1Q86SY8 53 aa4.27□□□□□ -1.73
VPS9D1-AS1-201ENST00000562298 KRTAP4-2Q9BYR5 136 aa4.11□□□□□ -1.75
VPS9D1-AS1-201ENST00000562298 LCE1BQ5T7P3 118 aa4.07□□□□□ -1.76
VPS9D1-AS1-201ENST00000562298 LCE1CQ5T751 118 aa3.99□□□□□ -1.77
VPS9D1-AS1-201ENST00000562298 PRAC1Q96KF2 57 aa3.99□□□□□ -1.77
VPS9D1-AS1-201ENST00000562298 KRTAP4-12Q9BQ66 201 aa3.81□□□□□ -1.8
VPS9D1-AS1-201ENST00000562298 KRTAP5-11Q6L8G4 156 aa3.64□□□□□ -1.83
VPS9D1-AS1-201ENST00000562298 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.6□□□□□ -1.83
VPS9D1-AS1-201ENST00000562298 LCE3DQ9BYE3 92 aa3.6□□□□□ -1.83
VPS9D1-AS1-201ENST00000562298 LCE1FQ5T754 118 aa3.58□□□□□ -1.84
VPS9D1-AS1-201ENST00000562298 PHGR1C9JFL3 82 aa3.37□□□□□ -1.87
VPS9D1-AS1-201ENST00000562298 LUZP6Q538Z0 58 aa3.37□□□□□ -1.87
VPS9D1-AS1-201ENST00000562298 KRTAP21-2Q3LI59 83 aa3.33□□□□□ -1.88
VPS9D1-AS1-201ENST00000562298 LCE3EQ5T5B0 92 aa3.33□□□□□ -1.88
VPS9D1-AS1-201ENST00000562298 NDUFAF8A1L188 74 aa3.28□□□□□ -1.88
VPS9D1-AS1-201ENST00000562298 H3BS24 57 aa3.1□□□□□ -1.91
VPS9D1-AS1-201ENST00000562298 KRTAP4-4Q9BYR3 166 aa3.09□□□□□ -1.91
VPS9D1-AS1-201ENST00000562298 A0A0A0MQY5 61 aa3.03□□□□□ -1.92
VPS9D1-AS1-201ENST00000562298 MUC19Q7Z5P9 8384 aa3.01□□□□□ -1.93
VPS9D1-AS1-201ENST00000562298 INE1O15225 51 aa2.84□□□□□ -1.95
VPS9D1-AS1-201ENST00000562298 KRTAP21-1Q3LI58 79 aa2.55□□□□□ -2
VPS9D1-AS1-201ENST00000562298 PRM1P04553 51 aa2.36□□□□□ -2.03
VPS9D1-AS1-201ENST00000562298 MUC16Q8WXI7 14507 aa2.13□□□□□ -2.07
Retrieved 78 of 20,778 RNA–protein pairs in 156.3 ms