RNA–Protein interactions for RNA: ENST00000559996.1

HERC1-206, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 2

Gene HERC1, Length 443 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-206ENST00000559996 MACF1Q9UPN3 7388 aaKnown RBP3.66□□□□□ -1.82
HERC1-206ENST00000559996 KMT2DO14686 5537 aa3.66□□□□□ -1.82
HERC1-206ENST00000559996 MT3P25713 68 aa3.62□□□□□ -1.83
HERC1-206ENST00000559996 KRTAP5-1Q6L8H4 278 aa3.62□□□□□ -1.83
HERC1-206ENST00000559996 TNP1P09430 55 aa3.6□□□□□ -1.83
HERC1-206ENST00000559996 SYNE2Q8WXH0 6885 aaKnown RBP3.59□□□□□ -1.83
HERC1-206ENST00000559996 KRTAP5-9P26371 169 aa3.58□□□□□ -1.84
HERC1-206ENST00000559996 ROMO1P60602 79 aa3.58□□□□□ -1.84
HERC1-206ENST00000559996 KRTAP6-3Q3LI67 103 aa3.58□□□□□ -1.84
HERC1-206ENST00000559996 KRTAP25-1Q3LHN0 102 aa3.56□□□□□ -1.84
HERC1-206ENST00000559996 LCE3AQ5TA76 89 aa3.56□□□□□ -1.84
HERC1-206ENST00000559996 KRTAP8-1Q8IUC2 63 aa3.55□□□□□ -1.84
HERC1-206ENST00000559996 KRTAP19-7Q3SYF9 63 aa3.53□□□□□ -1.84
HERC1-206ENST00000559996 PRO0628Q9UI54 55 aa3.52□□□□□ -1.85
HERC1-206ENST00000559996 KRTAP19-5Q3LI72 72 aa3.49□□□□□ -1.85
HERC1-206ENST00000559996 KRTAP4-4Q9BYR3 166 aa3.49□□□□□ -1.85
HERC1-206ENST00000559996 PMAIP1Q13794 54 aa3.48□□□□□ -1.85
HERC1-206ENST00000559996 SPRR2FQ96RM1 72 aa3.48□□□□□ -1.85
HERC1-206ENST00000559996 KRTAP5-4Q6L8H1 288 aa3.47□□□□□ -1.85
HERC1-206ENST00000559996 MT1EP04732 61 aa3.46□□□□□ -1.86
HERC1-206ENST00000559996 MUC12Q9UKN1 5478 aa3.42□□□□□ -1.86
HERC1-206ENST00000559996 KRTAP9-6A8MVA2 160 aa3.41□□□□□ -1.86
HERC1-206ENST00000559996 KRTAP12-3P60328 96 aa3.39□□□□□ -1.87
HERC1-206ENST00000559996 PP632Q6XCG6 107 aa3.37□□□□□ -1.87
HERC1-206ENST00000559996 MDN1Q9NU22 5596 aa3.36□□□□□ -1.87
HERC1-206ENST00000559996 MT1LQ93083 61 aa3.36□□□□□ -1.87
HERC1-206ENST00000559996 SPRR2EP22531 72 aa3.35□□□□□ -1.87
HERC1-206ENST00000559996 SPRR2BP35325 72 aa3.35□□□□□ -1.87
HERC1-206ENST00000559996 SPRR2AP35326 72 aa3.35□□□□□ -1.87
HERC1-206ENST00000559996 KRTAP19-3Q7Z4W3 81 aa3.35□□□□□ -1.87
HERC1-206ENST00000559996 PRAC1Q96KF2 57 aa3.33□□□□□ -1.88
HERC1-206ENST00000559996 A0A0A0MQY5 61 aa3.32□□□□□ -1.88
HERC1-206ENST00000559996 NEBP20929 6669 aa3.3□□□□□ -1.88
HERC1-206ENST00000559996 MT1GP13640 62 aa3.3□□□□□ -1.88
HERC1-206ENST00000559996 LCE1FQ5T754 118 aa3.27□□□□□ -1.89
HERC1-206ENST00000559996 KTN1-AS1Q86SY8 53 aa3.27□□□□□ -1.89
HERC1-206ENST00000559996 MT1MQ8N339 61 aa3.26□□□□□ -1.89
HERC1-206ENST00000559996 SPRR2DP22532 72 aa3.22□□□□□ -1.89
HERC1-206ENST00000559996 KRTAP4-3Q9BYR4 195 aa3.22□□□□□ -1.89
HERC1-206ENST00000559996 OBSCNQ5VST9 7968 aa3.19□□□□□ -1.9
HERC1-206ENST00000559996 LCE3CQ5T5A8 94 aa3.18□□□□□ -1.9
HERC1-206ENST00000559996 KRTAP2-3P0C7H8 128 aa3.15□□□□□ -1.91
HERC1-206ENST00000559996 KRTAP2-4Q9BYR9 128 aa3.15□□□□□ -1.91
HERC1-206ENST00000559996 KRTAP20-1Q3LI63 56 aa3.12□□□□□ -1.91
HERC1-206ENST00000559996 DSTQ03001 7570 aaKnown RBP3.12□□□□□ -1.91
HERC1-206ENST00000559996 KRTAP2-1Q9BYU5 128 aa3.08□□□□□ -1.92
HERC1-206ENST00000559996 SPRR5A0A1B0GTR4 108 aa3.01□□□□□ -1.93
HERC1-206ENST00000559996 KRTAP5-5Q701N2 237 aaPredicted RBP3□□□□□ -1.93
HERC1-206ENST00000559996 KRTAP5-2Q701N4 177 aa2.9□□□□□ -1.95
HERC1-206ENST00000559996 MT1AP04731 61 aa2.85□□□□□ -1.95
HERC1-206ENST00000559996 LCE3EQ5T5B0 92 aa2.85□□□□□ -1.95
HERC1-206ENST00000559996 KRTAP6-1Q3LI64 71 aa2.84□□□□□ -1.95
HERC1-206ENST00000559996 SYNE1Q8NF91 8797 aaKnown RBP2.81□□□□□ -1.96
HERC1-206ENST00000559996 MT4P47944 62 aa2.81□□□□□ -1.96
HERC1-206ENST00000559996 KRTAP20-2Q3LI61 65 aa2.75□□□□□ -1.97
HERC1-206ENST00000559996 KRTAP12-4P60329 112 aa2.74□□□□□ -1.97
HERC1-206ENST00000559996 HMCN1Q96RW7 5635 aa2.71□□□□□ -1.98
HERC1-206ENST00000559996 NDUFAF8A1L188 74 aa2.64□□□□□ -1.99
HERC1-206ENST00000559996 KRTAP6-2Q3LI66 62 aa2.63□□□□□ -1.99
HERC1-206ENST00000559996 LUZP6Q538Z0 58 aa2.63□□□□□ -1.99
HERC1-206ENST00000559996 LCE1CQ5T751 118 aa2.53□□□□□ -2
HERC1-206ENST00000559996 LCE1BQ5T7P3 118 aa2.53□□□□□ -2
HERC1-206ENST00000559996 KRTAP5-10Q6L8G5 202 aa2.49□□□□□ -2.01
HERC1-206ENST00000559996 AHNAK2Q8IVF2 5795 aa2.49□□□□□ -2.01
HERC1-206ENST00000559996 KRTAP5-8O75690 187 aa2.41□□□□□ -2.02
HERC1-206ENST00000559996 KRTAP5-7Q6L8G8 165 aa2.33□□□□□ -2.04
HERC1-206ENST00000559996 LCE3DQ9BYE3 92 aa2.33□□□□□ -2.04
HERC1-206ENST00000559996 GPR98Q8WXG9 6306 aa2.31□□□□□ -2.04
HERC1-206ENST00000559996 MUC5ACP98088 5654 aa2.14□□□□□ -2.07
HERC1-206ENST00000559996 MUC19Q7Z5P9 8384 aa2.14□□□□□ -2.07
HERC1-206ENST00000559996 INE1O15225 51 aa2.03□□□□□ -2.08
HERC1-206ENST00000559996 MUC5BQ9HC84 5762 aaPredicted RBP2□□□□□ -2.09
HERC1-206ENST00000559996 KRTAP21-2Q3LI59 83 aa1.89□□□□□ -2.11
HERC1-206ENST00000559996 AHNAKQ09666 5890 aaKnown RBP1.89□□□□□ -2.11
HERC1-206ENST00000559996 PRM1P04553 51 aa1.86□□□□□ -2.11
HERC1-206ENST00000559996 PHGR1C9JFL3 82 aa1.64□□□□□ -2.15
HERC1-206ENST00000559996 KRTAP21-1Q3LI58 79 aa1.14□□□□□ -2.23
HERC1-206ENST00000559996 MUC16Q8WXI7 14507 aa1.07□□□□□ -2.24
Retrieved 78 of 20,778 RNA–protein pairs in 84.2 ms