RNA–Protein interactions for RNA: ENST00000558827.1

SMAD3-208, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 552 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-208ENST00000558827 K7ERS5 55 aa4.52□□□□□ -1.69
SMAD3-208ENST00000558827 KRTAP4-9Q9BYQ8 210 aa4.52□□□□□ -1.69
SMAD3-208ENST00000558827 LCE3AQ5TA76 89 aa4.5□□□□□ -1.69
SMAD3-208ENST00000558827 MT1GP13640 62 aa4.48□□□□□ -1.69
SMAD3-208ENST00000558827 TNP1P09430 55 aa4.47□□□□□ -1.69
SMAD3-208ENST00000558827 MT1LQ93083 61 aa4.45□□□□□ -1.7
SMAD3-208ENST00000558827 MT1MQ8N339 61 aa4.44□□□□□ -1.7
SMAD3-208ENST00000558827 KRTAP4-3Q9BYR4 195 aa4.43□□□□□ -1.7
SMAD3-208ENST00000558827 PP632Q6XCG6 107 aa4.42□□□□□ -1.7
SMAD3-208ENST00000558827 GPR98Q8WXG9 6306 aa4.42□□□□□ -1.7
SMAD3-208ENST00000558827 CDC42SE1Q9NRR8 79 aa4.37□□□□□ -1.71
SMAD3-208ENST00000558827 MT4P47944 62 aa4.35□□□□□ -1.71
SMAD3-208ENST00000558827 LCE1DQ5T752 114 aa4.34□□□□□ -1.71
SMAD3-208ENST00000558827 KRTAP4-7Q9BYR0 210 aa4.33□□□□□ -1.72
SMAD3-208ENST00000558827 KRTAP12-3P60328 96 aa4.3□□□□□ -1.72
SMAD3-208ENST00000558827 LCE4AQ5TA78 99 aa4.27□□□□□ -1.73
SMAD3-208ENST00000558827 HMCN1Q96RW7 5635 aa4.26□□□□□ -1.73
SMAD3-208ENST00000558827 KRTAP25-1Q3LHN0 102 aa4.26□□□□□ -1.73
SMAD3-208ENST00000558827 SVIPQ8NHG7 77 aa4.23□□□□□ -1.73
SMAD3-208ENST00000558827 BRK1Q8WUW1 75 aa4.22□□□□□ -1.73
SMAD3-208ENST00000558827 ROMO1P60602 79 aa4.2□□□□□ -1.74
SMAD3-208ENST00000558827 KRTAP4-6Q9BYQ5 205 aa4.2□□□□□ -1.74
SMAD3-208ENST00000558827 KRTAP5-4Q6L8H1 288 aa4.19□□□□□ -1.74
SMAD3-208ENST00000558827 AHNAK2Q8IVF2 5795 aa4.16□□□□□ -1.74
SMAD3-208ENST00000558827 LOC100996750A0A140TA64 210 aa4.1□□□□□ -1.75
SMAD3-208ENST00000558827 KRTAP23-1A1A580 65 aa4.09□□□□□ -1.75
SMAD3-208ENST00000558827 KRTAP5-5Q701N2 237 aaPredicted RBP4.03□□□□□ -1.76
SMAD3-208ENST00000558827 KRTAP20-2Q3LI61 65 aa4□□□□□ -1.77
SMAD3-208ENST00000558827 KRTAP15-1Q3LI76 137 aa4□□□□□ -1.77
SMAD3-208ENST00000558827 KRTAP5-10Q6L8G5 202 aa4□□□□□ -1.77
SMAD3-208ENST00000558827 SYNE1Q8NF91 8797 aaKnown RBP3.99□□□□□ -1.77
SMAD3-208ENST00000558827 PMAIP1Q13794 54 aa3.98□□□□□ -1.77
SMAD3-208ENST00000558827 KRTAP12-4P60329 112 aa3.95□□□□□ -1.78
SMAD3-208ENST00000558827 LCE3CQ5T5A8 94 aa3.95□□□□□ -1.78
SMAD3-208ENST00000558827 KRTAP5-3Q6L8H2 238 aa3.93□□□□□ -1.78
SMAD3-208ENST00000558827 PRO0628Q9UI54 55 aa3.92□□□□□ -1.78
SMAD3-208ENST00000558827 SPRR5A0A1B0GTR4 108 aa3.91□□□□□ -1.78
SMAD3-208ENST00000558827 KRTAP19-4Q3LI73 84 aa3.88□□□□□ -1.79
SMAD3-208ENST00000558827 KRTAP5-7Q6L8G8 165 aa3.83□□□□□ -1.8
SMAD3-208ENST00000558827 KRTAP6-1Q3LI64 71 aa3.8□□□□□ -1.8
SMAD3-208ENST00000558827 KRTAP9-6A8MVA2 160 aa3.77□□□□□ -1.81
SMAD3-208ENST00000558827 MT1AP04731 61 aa3.77□□□□□ -1.81
SMAD3-208ENST00000558827 PRAC1Q96KF2 57 aa3.73□□□□□ -1.81
SMAD3-208ENST00000558827 KTN1-AS1Q86SY8 53 aa3.69□□□□□ -1.82
SMAD3-208ENST00000558827 KRTAP5-2Q701N4 177 aa3.66□□□□□ -1.82
SMAD3-208ENST00000558827 KRTAP9-4Q9BYQ2 154 aa3.66□□□□□ -1.82
SMAD3-208ENST00000558827 KRTAP4-11Q9BYQ6 195 aa3.65□□□□□ -1.83
SMAD3-208ENST00000558827 KRTAP6-2Q3LI66 62 aa3.63□□□□□ -1.83
SMAD3-208ENST00000558827 OBSCNQ5VST9 7968 aa3.56□□□□□ -1.84
SMAD3-208ENST00000558827 KRTAP5-8O75690 187 aa3.52□□□□□ -1.85
SMAD3-208ENST00000558827 MT3P25713 68 aa3.44□□□□□ -1.86
SMAD3-208ENST00000558827 AHNAKQ09666 5890 aaKnown RBP3.44□□□□□ -1.86
SMAD3-208ENST00000558827 MUC5BQ9HC84 5762 aaPredicted RBP3.41□□□□□ -1.86
SMAD3-208ENST00000558827 MUC5ACP98088 5654 aa3.35□□□□□ -1.87
SMAD3-208ENST00000558827 KRTAP9-9Q9BYP9 154 aa3.35□□□□□ -1.87
SMAD3-208ENST00000558827 KRTAP5-1Q6L8H4 278 aa3.31□□□□□ -1.88
SMAD3-208ENST00000558827 LUZP6Q538Z0 58 aa3.19□□□□□ -1.9
SMAD3-208ENST00000558827 LCE1EQ5T753 118 aa3.11□□□□□ -1.91
SMAD3-208ENST00000558827 H3BS24 57 aa3.08□□□□□ -1.92
SMAD3-208ENST00000558827 LCE1BQ5T7P3 118 aa3.07□□□□□ -1.92
SMAD3-208ENST00000558827 KRTAP4-2Q9BYR5 136 aa3.01□□□□□ -1.93
SMAD3-208ENST00000558827 A0A0A0MQY5 61 aa2.98□□□□□ -1.93
SMAD3-208ENST00000558827 LCE1CQ5T751 118 aa2.89□□□□□ -1.95
SMAD3-208ENST00000558827 LCE3DQ9BYE3 92 aa2.84□□□□□ -1.95
SMAD3-208ENST00000558827 KRTAP4-12Q9BQ66 201 aa2.83□□□□□ -1.96
SMAD3-208ENST00000558827 NDUFAF8A1L188 74 aa2.79□□□□□ -1.96
SMAD3-208ENST00000558827 LCE3EQ5T5B0 92 aa2.67□□□□□ -1.98
SMAD3-208ENST00000558827 KRTAP5-11Q6L8G4 156 aa2.62□□□□□ -1.99
SMAD3-208ENST00000558827 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.61□□□□□ -1.99
SMAD3-208ENST00000558827 LCE1FQ5T754 118 aa2.52□□□□□ -2.01
SMAD3-208ENST00000558827 KRTAP21-2Q3LI59 83 aa2.47□□□□□ -2.01
SMAD3-208ENST00000558827 KRTAP4-4Q9BYR3 166 aa2.38□□□□□ -2.03
SMAD3-208ENST00000558827 PHGR1C9JFL3 82 aa2.37□□□□□ -2.03
SMAD3-208ENST00000558827 INE1O15225 51 aa2.31□□□□□ -2.04
SMAD3-208ENST00000558827 MUC19Q7Z5P9 8384 aa2.22□□□□□ -2.05
SMAD3-208ENST00000558827 PRM1P04553 51 aa2.16□□□□□ -2.06
SMAD3-208ENST00000558827 KRTAP21-1Q3LI58 79 aa1.75□□□□□ -2.13
SMAD3-208ENST00000558827 MUC16Q8WXI7 14507 aa1.51□□□□□ -2.17
Retrieved 78 of 20,778 RNA–protein pairs in 80.5 ms