RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 BRK1Q8WUW1 75 aa5.36□□□□□ -1.55
SHMT2-228ENST00000557302 PRO0628Q9UI54 55 aa5.32□□□□□ -1.56
SHMT2-228ENST00000557302 KRTAP23-1A1A580 65 aa5.31□□□□□ -1.56
SHMT2-228ENST00000557302 KRTAP15-1Q3LI76 137 aa5.3□□□□□ -1.56
SHMT2-228ENST00000557302 KRTAP2-3P0C7H8 128 aa5.27□□□□□ -1.57
SHMT2-228ENST00000557302 KRTAP2-4Q9BYR9 128 aa5.27□□□□□ -1.57
SHMT2-228ENST00000557302 SPRR2EP22531 72 aa5.23□□□□□ -1.57
SHMT2-228ENST00000557302 SPRR2BP35325 72 aa5.23□□□□□ -1.57
SHMT2-228ENST00000557302 SPRR2AP35326 72 aa5.23□□□□□ -1.57
SHMT2-228ENST00000557302 K7ERS5 55 aa5.22□□□□□ -1.57
SHMT2-228ENST00000557302 LCE1AQ5T7P2 110 aa5.18□□□□□ -1.58
SHMT2-228ENST00000557302 C10orf95Q9H7T3 257 aa5.17□□□□□ -1.58
SHMT2-228ENST00000557302 TNP1P09430 55 aa5.13□□□□□ -1.59
SHMT2-228ENST00000557302 PMAIP1Q13794 54 aa5.1□□□□□ -1.59
SHMT2-228ENST00000557302 KRTAP2-2Q9BYT5 123 aa5.09□□□□□ -1.59
SHMT2-228ENST00000557302 KRTAP2-1Q9BYU5 128 aa5.09□□□□□ -1.59
SHMT2-228ENST00000557302 KRTAP19-7Q3SYF9 63 aa5.08□□□□□ -1.6
SHMT2-228ENST00000557302 SPRR2DP22532 72 aa5.06□□□□□ -1.6
SHMT2-228ENST00000557302 MT1EP04732 61 aa5.04□□□□□ -1.6
SHMT2-228ENST00000557302 KRTAP19-5Q3LI72 72 aa5.02□□□□□ -1.61
SHMT2-228ENST00000557302 LCE3AQ5TA76 89 aa5.02□□□□□ -1.61
SHMT2-228ENST00000557302 ROMO1P60602 79 aa4.96□□□□□ -1.62
SHMT2-228ENST00000557302 KRTAP19-3Q7Z4W3 81 aa4.96□□□□□ -1.62
SHMT2-228ENST00000557302 KRTAP25-1Q3LHN0 102 aa4.95□□□□□ -1.62
SHMT2-228ENST00000557302 KTN1-AS1Q86SY8 53 aa4.92□□□□□ -1.62
SHMT2-228ENST00000557302 MT1GP13640 62 aa4.87□□□□□ -1.63
SHMT2-228ENST00000557302 MT1LQ93083 61 aa4.85□□□□□ -1.63
SHMT2-228ENST00000557302 PP632Q6XCG6 107 aa4.84□□□□□ -1.63
SHMT2-228ENST00000557302 KRTAP12-3P60328 96 aa4.83□□□□□ -1.64
SHMT2-228ENST00000557302 SVIPQ8NHG7 77 aa4.83□□□□□ -1.64
SHMT2-228ENST00000557302 MT1MQ8N339 61 aa4.79□□□□□ -1.64
SHMT2-228ENST00000557302 DSTQ03001 7570 aaKnown RBP4.76□□□□□ -1.65
SHMT2-228ENST00000557302 GPR98Q8WXG9 6306 aa4.75□□□□□ -1.65
SHMT2-228ENST00000557302 PRAC1Q96KF2 57 aa4.68□□□□□ -1.66
SHMT2-228ENST00000557302 KRTAP4-3Q9BYR4 195 aa4.65□□□□□ -1.67
SHMT2-228ENST00000557302 HMCN1Q96RW7 5635 aa4.57□□□□□ -1.68
SHMT2-228ENST00000557302 LCE3CQ5T5A8 94 aa4.47□□□□□ -1.69
SHMT2-228ENST00000557302 KRTAP5-4Q6L8H1 288 aa4.43□□□□□ -1.7
SHMT2-228ENST00000557302 MT4P47944 62 aa4.42□□□□□ -1.7
SHMT2-228ENST00000557302 AHNAK2Q8IVF2 5795 aa4.41□□□□□ -1.7
SHMT2-228ENST00000557302 KRTAP5-5Q701N2 237 aaPredicted RBP4.36□□□□□ -1.71
SHMT2-228ENST00000557302 KRTAP5-11Q6L8G4 156 aa4.3□□□□□ -1.72
SHMT2-228ENST00000557302 KRTAP5-10Q6L8G5 202 aa4.29□□□□□ -1.72
SHMT2-228ENST00000557302 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.27□□□□□ -1.73
SHMT2-228ENST00000557302 KRTAP12-4P60329 112 aa4.21□□□□□ -1.74
SHMT2-228ENST00000557302 KRTAP9-6A8MVA2 160 aa4.19□□□□□ -1.74
SHMT2-228ENST00000557302 SPRR5A0A1B0GTR4 108 aa4.18□□□□□ -1.74
SHMT2-228ENST00000557302 KRTAP20-2Q3LI61 65 aa4.17□□□□□ -1.74
SHMT2-228ENST00000557302 KRTAP5-7Q6L8G8 165 aa4.15□□□□□ -1.75
SHMT2-228ENST00000557302 SYNE1Q8NF91 8797 aaKnown RBP4.14□□□□□ -1.75
SHMT2-228ENST00000557302 MT1AP04731 61 aa4.14□□□□□ -1.75
SHMT2-228ENST00000557302 KRTAP6-1Q3LI64 71 aa4.09□□□□□ -1.75
SHMT2-228ENST00000557302 LCE1EQ5T753 118 aa4.09□□□□□ -1.75
SHMT2-228ENST00000557302 LUZP6Q538Z0 58 aa3.94□□□□□ -1.78
SHMT2-228ENST00000557302 KRTAP5-2Q701N4 177 aa3.92□□□□□ -1.78
SHMT2-228ENST00000557302 MT3P25713 68 aa3.91□□□□□ -1.78
SHMT2-228ENST00000557302 KRTAP6-2Q3LI66 62 aa3.87□□□□□ -1.79
SHMT2-228ENST00000557302 NDUFAF8A1L188 74 aa3.73□□□□□ -1.81
SHMT2-228ENST00000557302 KRTAP5-1Q6L8H4 278 aa3.72□□□□□ -1.81
SHMT2-228ENST00000557302 KRTAP5-8O75690 187 aa3.69□□□□□ -1.82
SHMT2-228ENST00000557302 AHNAKQ09666 5890 aaKnown RBP3.68□□□□□ -1.82
SHMT2-228ENST00000557302 MUC5BQ9HC84 5762 aaPredicted RBP3.68□□□□□ -1.82
SHMT2-228ENST00000557302 MUC5ACP98088 5654 aa3.68□□□□□ -1.82
SHMT2-228ENST00000557302 LCE1FQ5T754 118 aa3.67□□□□□ -1.82
SHMT2-228ENST00000557302 OBSCNQ5VST9 7968 aa3.65□□□□□ -1.82
SHMT2-228ENST00000557302 A0A0A0MQY5 61 aa3.59□□□□□ -1.83
SHMT2-228ENST00000557302 KRTAP4-4Q9BYR3 166 aa3.57□□□□□ -1.84
SHMT2-228ENST00000557302 LCE3DQ9BYE3 92 aa3.27□□□□□ -1.89
SHMT2-228ENST00000557302 INE1O15225 51 aa3.23□□□□□ -1.89
SHMT2-228ENST00000557302 LCE1BQ5T7P3 118 aa3.21□□□□□ -1.9
SHMT2-228ENST00000557302 LCE3EQ5T5B0 92 aa3.16□□□□□ -1.9
SHMT2-228ENST00000557302 LCE1CQ5T751 118 aa3.16□□□□□ -1.9
SHMT2-228ENST00000557302 KRTAP21-2Q3LI59 83 aa2.68□□□□□ -1.98
SHMT2-228ENST00000557302 PRM1P04553 51 aa2.53□□□□□ -2
SHMT2-228ENST00000557302 PHGR1C9JFL3 82 aa2.48□□□□□ -2.01
SHMT2-228ENST00000557302 MUC19Q7Z5P9 8384 aa2.25□□□□□ -2.05
SHMT2-228ENST00000557302 KRTAP21-1Q3LI58 79 aa1.91□□□□□ -2.1
SHMT2-228ENST00000557302 MUC16Q8WXI7 14507 aa1.58□□□□□ -2.16
Retrieved 78 of 20,778 RNA–protein pairs in 156.9 ms