RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 MT1EP04732 61 aa0.83□□□□□ -2.28
SCFD1-219ENST00000556413 KRTAP19-7Q3SYF9 63 aa0.83□□□□□ -2.28
SCFD1-219ENST00000556413 MUC5BQ9HC84 5762 aaPredicted RBP0.82□□□□□ -2.28
SCFD1-219ENST00000556413 TRAV22A0A0B4J277 110 aa0.82□□□□□ -2.28
SCFD1-219ENST00000556413 H3BT86 120 aa0.82□□□□□ -2.28
SCFD1-219ENST00000556413 M0R143 59 aa0.82□□□□□ -2.28
SCFD1-219ENST00000556413 MT-ATP8P03928 68 aa0.82□□□□□ -2.28
SCFD1-219ENST00000556413 KRTAP19-5Q3LI72 72 aa0.82□□□□□ -2.28
SCFD1-219ENST00000556413 KRTAP19-3Q7Z4W3 81 aa0.82□□□□□ -2.28
SCFD1-219ENST00000556413 UBL5Q9BZL1 73 aa0.82□□□□□ -2.28
SCFD1-219ENST00000556413 CYSTM1Q9H1C7 97 aa0.82□□□□□ -2.28
SCFD1-219ENST00000556413 LOC101927531A0A1B0GV80 90 aa0.81□□□□□ -2.28
SCFD1-219ENST00000556413 A0A1B0GW54 56 aa0.81□□□□□ -2.28
SCFD1-219ENST00000556413 MUC5ACP98088 5654 aa0.8□□□□□ -2.28
SCFD1-219ENST00000556413 ACYP1P07311 99 aa0.8□□□□□ -2.28
SCFD1-219ENST00000556413 HIST1H4AP62805 103 aaKnown RBP0.8□□□□□ -2.28
SCFD1-219ENST00000556413 MT1MQ8N339 61 aa0.8□□□□□ -2.28
SCFD1-219ENST00000556413 LINC00208Q96KT6 92 aa0.8□□□□□ -2.28
SCFD1-219ENST00000556413 TP53AIP1Q9HCN2 124 aa0.8□□□□□ -2.28
SCFD1-219ENST00000556413 A0A0D9SG42 100 aa0.79□□□□□ -2.28
SCFD1-219ENST00000556413 SYNE1Q8NF91 8797 aaKnown RBP0.78□□□□□ -2.28
SCFD1-219ENST00000556413 ETDBQ3ZM63 59 aa0.78□□□□□ -2.28
SCFD1-219ENST00000556413 MT1LQ93083 61 aa0.78□□□□□ -2.28
SCFD1-219ENST00000556413 UQCRQO14949 82 aa0.77□□□□□ -2.29
SCFD1-219ENST00000556413 MP68P56378 58 aa0.77□□□□□ -2.29
SCFD1-219ENST00000556413 C20orf197Q8N268 126 aa0.77□□□□□ -2.29
SCFD1-219ENST00000556413 SMIM6P0DI80 62 aa0.76□□□□□ -2.29
SCFD1-219ENST00000556413 KRTAP20-2Q3LI61 65 aa0.76□□□□□ -2.29
SCFD1-219ENST00000556413 DMAC1Q96GE9 116 aa0.76□□□□□ -2.29
SCFD1-219ENST00000556413 C10orf95Q9H7T3 257 aa0.76□□□□□ -2.29
SCFD1-219ENST00000556413 TRAV7A0A075B6U4 112 aa0.75□□□□□ -2.29
SCFD1-219ENST00000556413 ATOX1O00244 68 aa0.75□□□□□ -2.29
SCFD1-219ENST00000556413 MT1GP13640 62 aa0.75□□□□□ -2.29
SCFD1-219ENST00000556413 SPATA8Q6RVD6 105 aa0.75□□□□□ -2.29
SCFD1-219ENST00000556413 CHKB-CPT1BH3BT56 60 aa0.74□□□□□ -2.29
SCFD1-219ENST00000556413 LOC105371267A0A1B0GV96 52 aa0.73□□□□□ -2.29
SCFD1-219ENST00000556413 COL5A1-AS1Q5SY13 56 aa0.73□□□□□ -2.29
SCFD1-219ENST00000556413 GTF2H5Q6ZYL4 71 aa0.72□□□□□ -2.29
SCFD1-219ENST00000556413 SNURFQ9Y675 71 aa0.72□□□□□ -2.29
SCFD1-219ENST00000556413 ATP5EP2Q5VTU8 51 aa0.71□□□□□ -2.3
SCFD1-219ENST00000556413 F8W1H4 67 aa0.7□□□□□ -2.3
SCFD1-219ENST00000556413 H3BPC8 53 aa0.7□□□□□ -2.3
SCFD1-219ENST00000556413 SCGB1A1P11684 91 aa0.7□□□□□ -2.3
SCFD1-219ENST00000556413 ACYP2P14621 99 aa0.7□□□□□ -2.3
SCFD1-219ENST00000556413 COA5Q86WW8 74 aa0.7□□□□□ -2.3
SCFD1-219ENST00000556413 LINC00643Q86TS7 51 aa0.69□□□□□ -2.3
SCFD1-219ENST00000556413 A0A1B0GV90 55 aa0.68□□□□□ -2.3
SCFD1-219ENST00000556413 KRTAP6-1Q3LI64 71 aa0.68□□□□□ -2.3
SCFD1-219ENST00000556413 SPTSSBQ8NFR3 76 aa0.68□□□□□ -2.3
SCFD1-219ENST00000556413 TMEM258P61165 79 aa0.67□□□□□ -2.3
SCFD1-219ENST00000556413 KRTAP6-2Q3LI66 62 aa0.67□□□□□ -2.3
SCFD1-219ENST00000556413 TNP1P09430 55 aa0.66□□□□□ -2.3
SCFD1-219ENST00000556413 MT1AP04731 61 aa0.65□□□□□ -2.31
SCFD1-219ENST00000556413 SERP1Q9Y6X1 66 aa0.65□□□□□ -2.31
SCFD1-219ENST00000556413 A0A1B0GU69 56 aa0.62□□□□□ -2.31
SCFD1-219ENST00000556413 KTN1-AS1Q86SY8 53 aa0.62□□□□□ -2.31
SCFD1-219ENST00000556413 SERP2Q8N6R1 65 aa0.62□□□□□ -2.31
SCFD1-219ENST00000556413 J3QR89 54 aa0.59□□□□□ -2.31
SCFD1-219ENST00000556413 SMIM20Q8N5G0 67 aa0.59□□□□□ -2.31
SCFD1-219ENST00000556413 H7BZZ5 65 aa0.58□□□□□ -2.32
SCFD1-219ENST00000556413 COX7CP15954 63 aa0.55□□□□□ -2.32
SCFD1-219ENST00000556413 PRR15LQ9BU68 103 aa0.55□□□□□ -2.32
SCFD1-219ENST00000556413 CCDC179H3BU77 68 aa0.54□□□□□ -2.32
SCFD1-219ENST00000556413 K7ERU9 68 aa0.54□□□□□ -2.32
SCFD1-219ENST00000556413 MIR22HGQ0VDD5 57 aa0.54□□□□□ -2.32
SCFD1-219ENST00000556413 LINC01558Q9Y6Z2 57 aa0.53□□□□□ -2.32
SCFD1-219ENST00000556413 UQCR11O14957 56 aa0.52□□□□□ -2.33
SCFD1-219ENST00000556413 PHGR1C9JFL3 82 aa0.51□□□□□ -2.33
SCFD1-219ENST00000556413 RPS28P62857 69 aaKnown RBP0.5□□□□□ -2.33
SCFD1-219ENST00000556413 Q1T7F1 81 aa0.5□□□□□ -2.33
SCFD1-219ENST00000556413 CDC42SE1Q9NRR8 79 aa0.49□□□□□ -2.33
SCFD1-219ENST00000556413 ROMO1P60602 79 aa0.48□□□□□ -2.33
SCFD1-219ENST00000556413 ATP5EP56381 51 aaPredicted RBP0.45□□□□□ -2.34
SCFD1-219ENST00000556413 KRTAP21-1Q3LI58 79 aa0.35□□□□□ -2.35
SCFD1-219ENST00000556413 BRK1Q8WUW1 75 aa0.32□□□□□ -2.36
SCFD1-219ENST00000556413 PRM1P04553 51 aa0.28□□□□□ -2.36
SCFD1-219ENST00000556413 PMAIP1Q13794 54 aa0.28□□□□□ -2.36
SCFD1-219ENST00000556413 INE1O15225 51 aa0.26□□□□□ -2.37
Retrieved 78 of 20,778 RNA–protein pairs in 6.8 ms