RNA–Protein interactions for RNA: ENST00000553529.5

SHMT2-206, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-206ENST00000553529 K7ERS5 55 aa6.67□□□□□ -1.34
SHMT2-206ENST00000553529 DSTQ03001 7570 aaKnown RBP6.67□□□□□ -1.34
SHMT2-206ENST00000553529 KRTAP4-9Q9BYQ8 210 aa6.6□□□□□ -1.35
SHMT2-206ENST00000553529 C10orf95Q9H7T3 257 aa6.56□□□□□ -1.36
SHMT2-206ENST00000553529 LCE3AQ5TA76 89 aa6.54□□□□□ -1.36
SHMT2-206ENST00000553529 MT1LQ93083 61 aa6.5□□□□□ -1.37
SHMT2-206ENST00000553529 KRTAP4-3Q9BYR4 195 aa6.5□□□□□ -1.37
SHMT2-206ENST00000553529 MT1MQ8N339 61 aa6.49□□□□□ -1.37
SHMT2-206ENST00000553529 MT1GP13640 62 aa6.48□□□□□ -1.37
SHMT2-206ENST00000553529 PRO0628Q9UI54 55 aa6.4□□□□□ -1.38
SHMT2-206ENST00000553529 TNP1P09430 55 aa6.37□□□□□ -1.39
SHMT2-206ENST00000553529 LCE1DQ5T752 114 aa6.37□□□□□ -1.39
SHMT2-206ENST00000553529 PP632Q6XCG6 107 aa6.36□□□□□ -1.39
SHMT2-206ENST00000553529 GPR98Q8WXG9 6306 aa6.34□□□□□ -1.39
SHMT2-206ENST00000553529 MT4P47944 62 aa6.33□□□□□ -1.4
SHMT2-206ENST00000553529 KRTAP4-7Q9BYR0 210 aa6.33□□□□□ -1.4
SHMT2-206ENST00000553529 PMAIP1Q13794 54 aa6.31□□□□□ -1.4
SHMT2-206ENST00000553529 ROMO1P60602 79 aa6.25□□□□□ -1.41
SHMT2-206ENST00000553529 LCE4AQ5TA78 99 aa6.22□□□□□ -1.41
SHMT2-206ENST00000553529 KRTAP12-3P60328 96 aa6.19□□□□□ -1.42
SHMT2-206ENST00000553529 HMCN1Q96RW7 5635 aa6.18□□□□□ -1.42
SHMT2-206ENST00000553529 KRTAP5-4Q6L8H1 288 aa6.17□□□□□ -1.42
SHMT2-206ENST00000553529 KRTAP4-6Q9BYQ5 205 aa6.17□□□□□ -1.42
SHMT2-206ENST00000553529 KRTAP25-1Q3LHN0 102 aa6.1□□□□□ -1.43
SHMT2-206ENST00000553529 AHNAK2Q8IVF2 5795 aa6.02□□□□□ -1.45
SHMT2-206ENST00000553529 LOC100996750A0A140TA64 210 aa6□□□□□ -1.45
SHMT2-206ENST00000553529 KTN1-AS1Q86SY8 53 aa5.98□□□□□ -1.45
SHMT2-206ENST00000553529 KRTAP5-5Q701N2 237 aaPredicted RBP5.96□□□□□ -1.46
SHMT2-206ENST00000553529 KRTAP5-10Q6L8G5 202 aa5.92□□□□□ -1.46
SHMT2-206ENST00000553529 PRAC1Q96KF2 57 aa5.87□□□□□ -1.47
SHMT2-206ENST00000553529 KRTAP20-2Q3LI61 65 aa5.86□□□□□ -1.47
SHMT2-206ENST00000553529 KRTAP23-1A1A580 65 aa5.84□□□□□ -1.47
SHMT2-206ENST00000553529 KRTAP5-3Q6L8H2 238 aa5.77□□□□□ -1.49
SHMT2-206ENST00000553529 SYNE1Q8NF91 8797 aaKnown RBP5.76□□□□□ -1.49
SHMT2-206ENST00000553529 KRTAP15-1Q3LI76 137 aa5.75□□□□□ -1.49
SHMT2-206ENST00000553529 SVIPQ8NHG7 77 aa5.75□□□□□ -1.49
SHMT2-206ENST00000553529 SPRR5A0A1B0GTR4 108 aa5.71□□□□□ -1.5
SHMT2-206ENST00000553529 LCE3CQ5T5A8 94 aa5.7□□□□□ -1.5
SHMT2-206ENST00000553529 KRTAP12-4P60329 112 aa5.67□□□□□ -1.5
SHMT2-206ENST00000553529 KRTAP5-7Q6L8G8 165 aa5.64□□□□□ -1.51
SHMT2-206ENST00000553529 KRTAP6-1Q3LI64 71 aa5.55□□□□□ -1.52
SHMT2-206ENST00000553529 KRTAP9-6A8MVA2 160 aa5.54□□□□□ -1.52
SHMT2-206ENST00000553529 KRTAP19-4Q3LI73 84 aa5.54□□□□□ -1.52
SHMT2-206ENST00000553529 MT1AP04731 61 aa5.49□□□□□ -1.53
SHMT2-206ENST00000553529 KRTAP5-2Q701N4 177 aa5.41□□□□□ -1.54
SHMT2-206ENST00000553529 KRTAP4-11Q9BYQ6 195 aa5.33□□□□□ -1.56
SHMT2-206ENST00000553529 KRTAP9-4Q9BYQ2 154 aa5.31□□□□□ -1.56
SHMT2-206ENST00000553529 KRTAP6-2Q3LI66 62 aa5.29□□□□□ -1.56
SHMT2-206ENST00000553529 KRTAP5-8O75690 187 aa5.2□□□□□ -1.58
SHMT2-206ENST00000553529 OBSCNQ5VST9 7968 aa5.06□□□□□ -1.6
SHMT2-206ENST00000553529 MT3P25713 68 aa4.96□□□□□ -1.62
SHMT2-206ENST00000553529 LUZP6Q538Z0 58 aa4.96□□□□□ -1.62
SHMT2-206ENST00000553529 MUC5ACP98088 5654 aa4.91□□□□□ -1.62
SHMT2-206ENST00000553529 KRTAP5-1Q6L8H4 278 aa4.89□□□□□ -1.63
SHMT2-206ENST00000553529 AHNAKQ09666 5890 aaKnown RBP4.88□□□□□ -1.63
SHMT2-206ENST00000553529 MUC5BQ9HC84 5762 aaPredicted RBP4.87□□□□□ -1.63
SHMT2-206ENST00000553529 KRTAP9-9Q9BYP9 154 aa4.84□□□□□ -1.63
SHMT2-206ENST00000553529 NDUFAF8A1L188 74 aa4.61□□□□□ -1.67
SHMT2-206ENST00000553529 LCE1EQ5T753 118 aa4.51□□□□□ -1.69
SHMT2-206ENST00000553529 KRTAP4-2Q9BYR5 136 aa4.44□□□□□ -1.7
SHMT2-206ENST00000553529 LCE1BQ5T7P3 118 aa4.43□□□□□ -1.7
SHMT2-206ENST00000553529 LCE1CQ5T751 118 aa4.23□□□□□ -1.73
SHMT2-206ENST00000553529 KRTAP4-12Q9BQ66 201 aa4.12□□□□□ -1.75
SHMT2-206ENST00000553529 A0A0A0MQY5 61 aa4.11□□□□□ -1.75
SHMT2-206ENST00000553529 LCE3DQ9BYE3 92 aa4.06□□□□□ -1.76
SHMT2-206ENST00000553529 KRTAP5-11Q6L8G4 156 aa3.85□□□□□ -1.79
SHMT2-206ENST00000553529 INE1O15225 51 aa3.84□□□□□ -1.79
SHMT2-206ENST00000553529 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.83□□□□□ -1.8
SHMT2-206ENST00000553529 LCE3EQ5T5B0 92 aa3.81□□□□□ -1.8
SHMT2-206ENST00000553529 H3BS24 57 aa3.74□□□□□ -1.81
SHMT2-206ENST00000553529 LCE1FQ5T754 118 aa3.66□□□□□ -1.82
SHMT2-206ENST00000553529 KRTAP21-2Q3LI59 83 aa3.64□□□□□ -1.83
SHMT2-206ENST00000553529 KRTAP4-4Q9BYR3 166 aa3.45□□□□□ -1.86
SHMT2-206ENST00000553529 PHGR1C9JFL3 82 aa3.44□□□□□ -1.86
SHMT2-206ENST00000553529 PRM1P04553 51 aa3.23□□□□□ -1.89
SHMT2-206ENST00000553529 MUC19Q7Z5P9 8384 aa3.12□□□□□ -1.91
SHMT2-206ENST00000553529 KRTAP21-1Q3LI58 79 aa2.53□□□□□ -2
SHMT2-206ENST00000553529 MUC16Q8WXI7 14507 aa2.21□□□□□ -2.05
Retrieved 78 of 20,778 RNA–protein pairs in 143.1 ms