RNA–Protein interactions for RNA: ENST00000546304.1

PRKDC-211, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 2

Gene PRKDC, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-211ENST00000546304 KRTAP13-4Q3LI77 160 aa2.72□□□□□ -1.97
PRKDC-211ENST00000546304 LCE3AQ5TA76 89 aa2.71□□□□□ -1.98
PRKDC-211ENST00000546304 SPINT4Q6UDR6 99 aa2.71□□□□□ -1.98
PRKDC-211ENST00000546304 A0A1B0GU33 70 aa2.7□□□□□ -1.98
PRKDC-211ENST00000546304 PRR15LQ9BU68 103 aa2.7□□□□□ -1.98
PRKDC-211ENST00000546304 LINC01558Q9Y6Z2 57 aa2.7□□□□□ -1.98
PRKDC-211ENST00000546304 A6NN06 94 aa2.69□□□□□ -1.98
PRKDC-211ENST00000546304 PLAC4Q8WY50 150 aa2.69□□□□□ -1.98
PRKDC-211ENST00000546304 MACF1Q9UPN3 7388 aaKnown RBP2.68□□□□□ -1.98
PRKDC-211ENST00000546304 SPATA8Q6RVD6 105 aa2.67□□□□□ -1.98
PRKDC-211ENST00000546304 A0A0D9SG42 100 aa2.66□□□□□ -1.98
PRKDC-211ENST00000546304 KRTAP4-3Q9BYR4 195 aa2.66□□□□□ -1.98
PRKDC-211ENST00000546304 ROMO1P60602 79 aa2.65□□□□□ -1.99
PRKDC-211ENST00000546304 MT1XP80297 61 aa2.65□□□□□ -1.99
PRKDC-211ENST00000546304 PRO2289Q9P1D8 64 aa2.65□□□□□ -1.99
PRKDC-211ENST00000546304 SYNE2Q8WXH0 6885 aaKnown RBP2.65□□□□□ -1.99
PRKDC-211ENST00000546304 KRTAP25-1Q3LHN0 102 aa2.64□□□□□ -1.99
PRKDC-211ENST00000546304 KMT2DO14686 5537 aa2.63□□□□□ -1.99
PRKDC-211ENST00000546304 Q1T7F1 81 aa2.63□□□□□ -1.99
PRKDC-211ENST00000546304 UQCR11O14957 56 aa2.61□□□□□ -1.99
PRKDC-211ENST00000546304 KRTAP12-1P59990 96 aa2.61□□□□□ -1.99
PRKDC-211ENST00000546304 KRTAP5-2Q701N4 177 aa2.58□□□□□ -2
PRKDC-211ENST00000546304 MUC12Q9UKN1 5478 aa2.57□□□□□ -2
PRKDC-211ENST00000546304 MIR22HGQ0VDD5 57 aa2.56□□□□□ -2
PRKDC-211ENST00000546304 MDN1Q9NU22 5596 aa2.54□□□□□ -2
PRKDC-211ENST00000546304 KRTAP5-5Q701N2 237 aaPredicted RBP2.52□□□□□ -2.01
PRKDC-211ENST00000546304 KRTAP6-3Q3LI67 103 aa2.5□□□□□ -2.01
PRKDC-211ENST00000546304 NEBP20929 6669 aa2.48□□□□□ -2.01
PRKDC-211ENST00000546304 KRTAP8-1Q8IUC2 63 aa2.48□□□□□ -2.01
PRKDC-211ENST00000546304 CDC42SE1Q9NRR8 79 aa2.47□□□□□ -2.01
PRKDC-211ENST00000546304 C10orf95Q9H7T3 257 aa2.46□□□□□ -2.02
PRKDC-211ENST00000546304 SPRR2FQ96RM1 72 aa2.44□□□□□ -2.02
PRKDC-211ENST00000546304 TNP1P09430 55 aa2.43□□□□□ -2.02
PRKDC-211ENST00000546304 LCE1CQ5T751 118 aa2.38□□□□□ -2.03
PRKDC-211ENST00000546304 LCE1BQ5T7P3 118 aa2.38□□□□□ -2.03
PRKDC-211ENST00000546304 SPRR2EP22531 72 aa2.36□□□□□ -2.03
PRKDC-211ENST00000546304 SPRR2BP35325 72 aa2.36□□□□□ -2.03
PRKDC-211ENST00000546304 SPRR2AP35326 72 aa2.36□□□□□ -2.03
PRKDC-211ENST00000546304 KRTAP19-7Q3SYF9 63 aa2.36□□□□□ -2.03
PRKDC-211ENST00000546304 MT1EP04732 61 aa2.34□□□□□ -2.03
PRKDC-211ENST00000546304 KRTAP19-5Q3LI72 72 aa2.34□□□□□ -2.03
PRKDC-211ENST00000546304 KRTAP5-8O75690 187 aa2.29□□□□□ -2.04
PRKDC-211ENST00000546304 KRTAP19-3Q7Z4W3 81 aa2.29□□□□□ -2.04
PRKDC-211ENST00000546304 LCE3DQ9BYE3 92 aa2.29□□□□□ -2.04
PRKDC-211ENST00000546304 SPRR2DP22532 72 aa2.28□□□□□ -2.04
PRKDC-211ENST00000546304 KRTAP12-3P60328 96 aa2.28□□□□□ -2.04
PRKDC-211ENST00000546304 INE1O15225 51 aa2.27□□□□□ -2.05
PRKDC-211ENST00000546304 KRTAP20-1Q3LI63 56 aa2.26□□□□□ -2.05
PRKDC-211ENST00000546304 PP632Q6XCG6 107 aa2.26□□□□□ -2.05
PRKDC-211ENST00000546304 MT1LQ93083 61 aa2.26□□□□□ -2.05
PRKDC-211ENST00000546304 MT1GP13640 62 aa2.23□□□□□ -2.05
PRKDC-211ENST00000546304 MT1MQ8N339 61 aa2.22□□□□□ -2.05
PRKDC-211ENST00000546304 KRTAP2-3P0C7H8 128 aa2.21□□□□□ -2.06
PRKDC-211ENST00000546304 KRTAP2-4Q9BYR9 128 aa2.21□□□□□ -2.06
PRKDC-211ENST00000546304 DSTQ03001 7570 aaKnown RBP2.21□□□□□ -2.06
PRKDC-211ENST00000546304 KRTAP2-1Q9BYU5 128 aa2.15□□□□□ -2.07
PRKDC-211ENST00000546304 SPRR5A0A1B0GTR4 108 aa2.07□□□□□ -2.08
PRKDC-211ENST00000546304 HMCN1Q96RW7 5635 aa2.06□□□□□ -2.08
PRKDC-211ENST00000546304 SYNE1Q8NF91 8797 aaKnown RBP1.98□□□□□ -2.09
PRKDC-211ENST00000546304 MT4P47944 62 aa1.98□□□□□ -2.09
PRKDC-211ENST00000546304 KRTAP5-7Q6L8G8 165 aa1.97□□□□□ -2.09
PRKDC-211ENST00000546304 GPR98Q8WXG9 6306 aa1.95□□□□□ -2.1
PRKDC-211ENST00000546304 MUC19Q7Z5P9 8384 aa1.95□□□□□ -2.1
PRKDC-211ENST00000546304 AHNAK2Q8IVF2 5795 aa1.94□□□□□ -2.1
PRKDC-211ENST00000546304 MT1AP04731 61 aa1.93□□□□□ -2.1
PRKDC-211ENST00000546304 KRTAP12-4P60329 112 aa1.91□□□□□ -2.1
PRKDC-211ENST00000546304 KRTAP6-1Q3LI64 71 aa1.9□□□□□ -2.11
PRKDC-211ENST00000546304 KRTAP20-2Q3LI61 65 aa1.89□□□□□ -2.11
PRKDC-211ENST00000546304 KRTAP6-2Q3LI66 62 aa1.79□□□□□ -2.12
PRKDC-211ENST00000546304 KRTAP5-10Q6L8G5 202 aa1.76□□□□□ -2.13
PRKDC-211ENST00000546304 KRTAP21-2Q3LI59 83 aa1.69□□□□□ -2.14
PRKDC-211ENST00000546304 MUC5ACP98088 5654 aa1.65□□□□□ -2.14
PRKDC-211ENST00000546304 MUC5BQ9HC84 5762 aaPredicted RBP1.59□□□□□ -2.16
PRKDC-211ENST00000546304 AHNAKQ09666 5890 aaKnown RBP1.58□□□□□ -2.16
PRKDC-211ENST00000546304 PRM1P04553 51 aa1.22□□□□□ -2.21
PRKDC-211ENST00000546304 PHGR1C9JFL3 82 aa1.13□□□□□ -2.23
PRKDC-211ENST00000546304 MUC16Q8WXI7 14507 aa0.81□□□□□ -2.28
PRKDC-211ENST00000546304 KRTAP21-1Q3LI58 79 aa0.77□□□□□ -2.29
Retrieved 78 of 20,778 RNA–protein pairs in 10.7 ms