RNA–Protein interactions for RNA: ENST00000545942.5

CHD4-214, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 1 (best)

Gene CHD4, Length 1,317 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-214ENST00000545942 CCDC179H3BU77 68 aa7.87□□□□□ -1.15
CHD4-214ENST00000545942 ATP5EP56381 51 aaPredicted RBP7.86□□□□□ -1.15
CHD4-214ENST00000545942 HMCN1Q96RW7 5635 aa7.86□□□□□ -1.15
CHD4-214ENST00000545942 PCP4P48539 62 aa7.84□□□□□ -1.15
CHD4-214ENST00000545942 KRTAP5-4Q6L8H1 288 aa7.8□□□□□ -1.16
CHD4-214ENST00000545942 LINC01558Q9Y6Z2 57 aa7.8□□□□□ -1.16
CHD4-214ENST00000545942 KRTAP12-3P60328 96 aa7.73□□□□□ -1.17
CHD4-214ENST00000545942 UQCR11O14957 56 aa7.67□□□□□ -1.18
CHD4-214ENST00000545942 KRTAP4-6Q9BYQ5 205 aa7.66□□□□□ -1.18
CHD4-214ENST00000545942 KRTAP4-7Q9BYR0 210 aa7.66□□□□□ -1.18
CHD4-214ENST00000545942 AHNAK2Q8IVF2 5795 aa7.6□□□□□ -1.19
CHD4-214ENST00000545942 TMEM258P61165 79 aa7.57□□□□□ -1.2
CHD4-214ENST00000545942 KRTAP5-10Q6L8G5 202 aa7.52□□□□□ -1.2
CHD4-214ENST00000545942 KRTAP25-1Q3LHN0 102 aa7.5□□□□□ -1.21
CHD4-214ENST00000545942 MIR22HGQ0VDD5 57 aa7.47□□□□□ -1.21
CHD4-214ENST00000545942 KRTAP5-5Q701N2 237 aaPredicted RBP7.43□□□□□ -1.22
CHD4-214ENST00000545942 K7ERS5 55 aa7.38□□□□□ -1.23
CHD4-214ENST00000545942 KRTAP20-2Q3LI61 65 aa7.37□□□□□ -1.23
CHD4-214ENST00000545942 SPRR5A0A1B0GTR4 108 aa7.33□□□□□ -1.24
CHD4-214ENST00000545942 KRTAP5-3Q6L8H2 238 aa7.32□□□□□ -1.24
CHD4-214ENST00000545942 KRTAP19-4Q3LI73 84 aa7.3□□□□□ -1.24
CHD4-214ENST00000545942 KRTAP12-4P60329 112 aa7.29□□□□□ -1.24
CHD4-214ENST00000545942 LOC100996750A0A140TA64 210 aa7.27□□□□□ -1.24
CHD4-214ENST00000545942 RPS28P62857 69 aaKnown RBP7.26□□□□□ -1.25
CHD4-214ENST00000545942 KRTAP5-7Q6L8G8 165 aa7.26□□□□□ -1.25
CHD4-214ENST00000545942 PSPHP1O15172 72 aa7.23□□□□□ -1.25
CHD4-214ENST00000545942 V9GYY9 64 aa7.23□□□□□ -1.25
CHD4-214ENST00000545942 KRTAP23-1A1A580 65 aa7.21□□□□□ -1.26
CHD4-214ENST00000545942 SYNE1Q8NF91 8797 aaKnown RBP7.19□□□□□ -1.26
CHD4-214ENST00000545942 KRTAP15-1Q3LI76 137 aa7.17□□□□□ -1.26
CHD4-214ENST00000545942 Q1T7F1 81 aa7.15□□□□□ -1.26
CHD4-214ENST00000545942 LCE3CQ5T5A8 94 aa7.1□□□□□ -1.27
CHD4-214ENST00000545942 A6NED7 52 aa6.98□□□□□ -1.29
CHD4-214ENST00000545942 CDC42SE1Q9NRR8 79 aa6.96□□□□□ -1.3
CHD4-214ENST00000545942 MT1AP04731 61 aa6.88□□□□□ -1.31
CHD4-214ENST00000545942 KRTAP6-1Q3LI64 71 aa6.83□□□□□ -1.32
CHD4-214ENST00000545942 ROMO1P60602 79 aa6.82□□□□□ -1.32
CHD4-214ENST00000545942 KRTAP5-2Q701N4 177 aa6.8□□□□□ -1.32
CHD4-214ENST00000545942 KRTAP4-11Q9BYQ6 195 aa6.77□□□□□ -1.32
CHD4-214ENST00000545942 KRTAP9-6A8MVA2 160 aa6.69□□□□□ -1.34
CHD4-214ENST00000545942 KRTAP9-4Q9BYQ2 154 aa6.66□□□□□ -1.34
CHD4-214ENST00000545942 KRTAP6-2Q3LI66 62 aa6.57□□□□□ -1.36
CHD4-214ENST00000545942 KRTAP5-8O75690 187 aa6.54□□□□□ -1.36
CHD4-214ENST00000545942 OBSCNQ5VST9 7968 aa6.5□□□□□ -1.37
CHD4-214ENST00000545942 BRK1Q8WUW1 75 aa6.5□□□□□ -1.37
CHD4-214ENST00000545942 MT3P25713 68 aa6.3□□□□□ -1.4
CHD4-214ENST00000545942 MUC5ACP98088 5654 aa6.3□□□□□ -1.4
CHD4-214ENST00000545942 MUC5BQ9HC84 5762 aaPredicted RBP6.27□□□□□ -1.41
CHD4-214ENST00000545942 AHNAKQ09666 5890 aaKnown RBP6.26□□□□□ -1.41
CHD4-214ENST00000545942 PRO0628Q9UI54 55 aa6.25□□□□□ -1.41
CHD4-214ENST00000545942 KRTAP9-9Q9BYP9 154 aa6.25□□□□□ -1.41
CHD4-214ENST00000545942 PMAIP1Q13794 54 aa6.16□□□□□ -1.42
CHD4-214ENST00000545942 KRTAP5-1Q6L8H4 278 aa6.13□□□□□ -1.43
CHD4-214ENST00000545942 LCE1EQ5T753 118 aa5.83□□□□□ -1.48
CHD4-214ENST00000545942 KTN1-AS1Q86SY8 53 aa5.81□□□□□ -1.48
CHD4-214ENST00000545942 PRAC1Q96KF2 57 aa5.74□□□□□ -1.49
CHD4-214ENST00000545942 SVIPQ8NHG7 77 aa5.6□□□□□ -1.51
CHD4-214ENST00000545942 KRTAP4-2Q9BYR5 136 aa5.5□□□□□ -1.53
CHD4-214ENST00000545942 LCE1BQ5T7P3 118 aa5.49□□□□□ -1.53
CHD4-214ENST00000545942 LCE1CQ5T751 118 aa5.41□□□□□ -1.54
CHD4-214ENST00000545942 LCE3DQ9BYE3 92 aa5.09□□□□□ -1.59
CHD4-214ENST00000545942 KRTAP4-12Q9BQ66 201 aa5.04□□□□□ -1.6
CHD4-214ENST00000545942 KRTAP5-11Q6L8G4 156 aa4.92□□□□□ -1.62
CHD4-214ENST00000545942 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.9□□□□□ -1.63
CHD4-214ENST00000545942 LCE1FQ5T754 118 aa4.82□□□□□ -1.64
CHD4-214ENST00000545942 LUZP6Q538Z0 58 aa4.78□□□□□ -1.64
CHD4-214ENST00000545942 LCE3EQ5T5B0 92 aa4.75□□□□□ -1.65
CHD4-214ENST00000545942 KRTAP21-2Q3LI59 83 aa4.5□□□□□ -1.69
CHD4-214ENST00000545942 NDUFAF8A1L188 74 aa4.47□□□□□ -1.69
CHD4-214ENST00000545942 PHGR1C9JFL3 82 aa4.39□□□□□ -1.71
CHD4-214ENST00000545942 KRTAP4-4Q9BYR3 166 aa4.14□□□□□ -1.75
CHD4-214ENST00000545942 MUC19Q7Z5P9 8384 aa4□□□□□ -1.77
CHD4-214ENST00000545942 A0A0A0MQY5 61 aa3.94□□□□□ -1.78
CHD4-214ENST00000545942 H3BS24 57 aa3.9□□□□□ -1.79
CHD4-214ENST00000545942 INE1O15225 51 aa3.72□□□□□ -1.81
CHD4-214ENST00000545942 PRM1P04553 51 aa3.47□□□□□ -1.85
CHD4-214ENST00000545942 KRTAP21-1Q3LI58 79 aa3.35□□□□□ -1.87
CHD4-214ENST00000545942 MUC16Q8WXI7 14507 aa2.79□□□□□ -1.96
Retrieved 78 of 20,778 RNA–protein pairs in 130.2 ms