RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 SPINT4Q6UDR6 99 aa4.7□□□□□ -1.66
USP28-212ENST00000544750 TMEM258P61165 79 aa4.69□□□□□ -1.66
USP28-212ENST00000544750 MT1GP13640 62 aa4.68□□□□□ -1.66
USP28-212ENST00000544750 A8MU10 97 aa4.67□□□□□ -1.66
USP28-212ENST00000544750 KRTAP5-4Q6L8H1 288 aa4.67□□□□□ -1.66
USP28-212ENST00000544750 KRTAP5-7Q6L8G8 165 aa4.66□□□□□ -1.66
USP28-212ENST00000544750 LINC01558Q9Y6Z2 57 aa4.66□□□□□ -1.66
USP28-212ENST00000544750 SMIM26A0A096LP01 95 aa4.65□□□□□ -1.67
USP28-212ENST00000544750 MT1MQ8N339 61 aa4.61□□□□□ -1.67
USP28-212ENST00000544750 PRR15LQ9BU68 103 aa4.61□□□□□ -1.67
USP28-212ENST00000544750 PP632Q6XCG6 107 aa4.6□□□□□ -1.67
USP28-212ENST00000544750 KRTAP4-2Q9BYR5 136 aa4.59□□□□□ -1.67
USP28-212ENST00000544750 KRTAP19-5Q3LI72 72 aa4.58□□□□□ -1.68
USP28-212ENST00000544750 KRTAP5-3Q6L8H2 238 aa4.58□□□□□ -1.68
USP28-212ENST00000544750 KRTAP4-11Q9BYQ6 195 aa4.56□□□□□ -1.68
USP28-212ENST00000544750 MT1LQ93083 61 aa4.53□□□□□ -1.68
USP28-212ENST00000544750 C10orf95Q9H7T3 257 aa4.53□□□□□ -1.68
USP28-212ENST00000544750 KRTAP4-3Q9BYR4 195 aa4.52□□□□□ -1.69
USP28-212ENST00000544750 UQCR11O14957 56 aa4.48□□□□□ -1.69
USP28-212ENST00000544750 TNP1P09430 55 aa4.44□□□□□ -1.7
USP28-212ENST00000544750 LCE3AQ5TA76 89 aa4.44□□□□□ -1.7
USP28-212ENST00000544750 KRTAP20-2Q3LI61 65 aa4.41□□□□□ -1.7
USP28-212ENST00000544750 MIR22HGQ0VDD5 57 aa4.4□□□□□ -1.71
USP28-212ENST00000544750 Q1T7F1 81 aa4.4□□□□□ -1.71
USP28-212ENST00000544750 SPRR5A0A1B0GTR4 108 aa4.38□□□□□ -1.71
USP28-212ENST00000544750 PSPHP1O15172 72 aa4.38□□□□□ -1.71
USP28-212ENST00000544750 V9GYY9 64 aa4.38□□□□□ -1.71
USP28-212ENST00000544750 KRTAP5-5Q701N2 237 aaPredicted RBP4.3□□□□□ -1.72
USP28-212ENST00000544750 PCP4P48539 62 aa4.27□□□□□ -1.73
USP28-212ENST00000544750 KRTAP12-3P60328 96 aa4.24□□□□□ -1.73
USP28-212ENST00000544750 RPS28P62857 69 aaKnown RBP4.24□□□□□ -1.73
USP28-212ENST00000544750 KRTAP25-1Q3LHN0 102 aa4.24□□□□□ -1.73
USP28-212ENST00000544750 K7ERS5 55 aa4.23□□□□□ -1.73
USP28-212ENST00000544750 A6NED7 52 aa4.21□□□□□ -1.74
USP28-212ENST00000544750 KRTAP12-4P60329 112 aa4.21□□□□□ -1.74
USP28-212ENST00000544750 SYNE1Q8NF91 8797 aaKnown RBP4.19□□□□□ -1.74
USP28-212ENST00000544750 KRTAP23-1A1A580 65 aa4.13□□□□□ -1.75
USP28-212ENST00000544750 CDC42SE1Q9NRR8 79 aa4.07□□□□□ -1.76
USP28-212ENST00000544750 MUC5BQ9HC84 5762 aaPredicted RBP4.02□□□□□ -1.77
USP28-212ENST00000544750 KRTAP5-8O75690 187 aa4.02□□□□□ -1.77
USP28-212ENST00000544750 ROMO1P60602 79 aa4.02□□□□□ -1.77
USP28-212ENST00000544750 KRTAP5-2Q701N4 177 aa4.02□□□□□ -1.77
USP28-212ENST00000544750 AHNAKQ09666 5890 aaKnown RBP4□□□□□ -1.77
USP28-212ENST00000544750 KRTAP15-1Q3LI76 137 aa4□□□□□ -1.77
USP28-212ENST00000544750 MUC5ACP98088 5654 aa4□□□□□ -1.77
USP28-212ENST00000544750 LCE3CQ5T5A8 94 aa3.92□□□□□ -1.78
USP28-212ENST00000544750 KRTAP6-1Q3LI64 71 aa3.85□□□□□ -1.79
USP28-212ENST00000544750 MT1AP04731 61 aa3.84□□□□□ -1.79
USP28-212ENST00000544750 OBSCNQ5VST9 7968 aa3.79□□□□□ -1.8
USP28-212ENST00000544750 KRTAP9-6A8MVA2 160 aa3.76□□□□□ -1.81
USP28-212ENST00000544750 KRTAP6-2Q3LI66 62 aa3.74□□□□□ -1.81
USP28-212ENST00000544750 BRK1Q8WUW1 75 aa3.72□□□□□ -1.81
USP28-212ENST00000544750 KRTAP5-1Q6L8H4 278 aa3.68□□□□□ -1.82
USP28-212ENST00000544750 MT3P25713 68 aa3.51□□□□□ -1.85
USP28-212ENST00000544750 PMAIP1Q13794 54 aa3.48□□□□□ -1.85
USP28-212ENST00000544750 PRAC1Q96KF2 57 aa3.39□□□□□ -1.87
USP28-212ENST00000544750 LCE1EQ5T753 118 aa3.34□□□□□ -1.87
USP28-212ENST00000544750 PRO0628Q9UI54 55 aa3.31□□□□□ -1.88
USP28-212ENST00000544750 SVIPQ8NHG7 77 aa3.24□□□□□ -1.89
USP28-212ENST00000544750 KTN1-AS1Q86SY8 53 aa3.15□□□□□ -1.91
USP28-212ENST00000544750 LCE1BQ5T7P3 118 aa3.14□□□□□ -1.91
USP28-212ENST00000544750 A0A0A0MQY5 61 aa3.12□□□□□ -1.91
USP28-212ENST00000544750 LCE1CQ5T751 118 aa3.11□□□□□ -1.91
USP28-212ENST00000544750 KRTAP5-11Q6L8G4 156 aa3.09□□□□□ -1.91
USP28-212ENST00000544750 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.04□□□□□ -1.92
USP28-212ENST00000544750 LCE1FQ5T754 118 aa2.87□□□□□ -1.95
USP28-212ENST00000544750 LCE3DQ9BYE3 92 aa2.83□□□□□ -1.96
USP28-212ENST00000544750 PHGR1C9JFL3 82 aa2.77□□□□□ -1.97
USP28-212ENST00000544750 LUZP6Q538Z0 58 aa2.76□□□□□ -1.97
USP28-212ENST00000544750 LCE3EQ5T5B0 92 aa2.67□□□□□ -1.98
USP28-212ENST00000544750 NDUFAF8A1L188 74 aa2.65□□□□□ -1.99
USP28-212ENST00000544750 KRTAP21-2Q3LI59 83 aa2.57□□□□□ -2
USP28-212ENST00000544750 KRTAP4-4Q9BYR3 166 aa2.53□□□□□ -2
USP28-212ENST00000544750 MUC19Q7Z5P9 8384 aa2.38□□□□□ -2.03
USP28-212ENST00000544750 KRTAP21-1Q3LI58 79 aa2.11□□□□□ -2.07
USP28-212ENST00000544750 PRM1P04553 51 aa2.08□□□□□ -2.08
USP28-212ENST00000544750 INE1O15225 51 aa1.84□□□□□ -2.11
USP28-212ENST00000544750 MUC16Q8WXI7 14507 aa1.66□□□□□ -2.14
Retrieved 78 of 20,778 RNA–protein pairs in 95.6 ms