RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 SPATA45Q537H7 98 aa1.43□□□□□ -2.18
SNHG1-220ENST00000544550 TRAV22A0A0B4J277 110 aa1.42□□□□□ -2.18
SNHG1-220ENST00000544550 KRTAP12-4P60329 112 aa1.42□□□□□ -2.18
SNHG1-220ENST00000544550 K7EP34 96 aa1.41□□□□□ -2.18
SNHG1-220ENST00000544550 A0A1W2PPM0 123 aa1.4□□□□□ -2.19
SNHG1-220ENST00000544550 MT1LQ93083 61 aa1.4□□□□□ -2.19
SNHG1-220ENST00000544550 MUC19Q7Z5P9 8384 aa1.4□□□□□ -2.19
SNHG1-220ENST00000544550 KRTAP19-5Q3LI72 72 aa1.39□□□□□ -2.19
SNHG1-220ENST00000544550 PYY3Q5JQD4 70 aa1.39□□□□□ -2.19
SNHG1-220ENST00000544550 UBL5Q9BZL1 73 aa1.37□□□□□ -2.19
SNHG1-220ENST00000544550 MUC5ACP98088 5654 aa1.37□□□□□ -2.19
SNHG1-220ENST00000544550 A0A0D9SG42 100 aa1.36□□□□□ -2.19
SNHG1-220ENST00000544550 TSTD3H0UI37 97 aa1.36□□□□□ -2.19
SNHG1-220ENST00000544550 ATOX1O00244 68 aa1.36□□□□□ -2.19
SNHG1-220ENST00000544550 UQCR10Q9UDW1 63 aa1.36□□□□□ -2.19
SNHG1-220ENST00000544550 AHNAKQ09666 5890 aaKnown RBP1.36□□□□□ -2.19
SNHG1-220ENST00000544550 TRAV7A0A075B6U4 112 aa1.35□□□□□ -2.19
SNHG1-220ENST00000544550 LOC105371267A0A1B0GV96 52 aa1.35□□□□□ -2.19
SNHG1-220ENST00000544550 H3BT86 120 aa1.35□□□□□ -2.19
SNHG1-220ENST00000544550 TMEM258P61165 79 aa1.35□□□□□ -2.19
SNHG1-220ENST00000544550 MUC5BQ9HC84 5762 aaPredicted RBP1.34□□□□□ -2.19
SNHG1-220ENST00000544550 SMIM6P0DI80 62 aa1.34□□□□□ -2.19
SNHG1-220ENST00000544550 KTN1-AS1Q86SY8 53 aa1.33□□□□□ -2.2
SNHG1-220ENST00000544550 SPCS1Q9Y6A9 102 aa1.33□□□□□ -2.2
SNHG1-220ENST00000544550 H0Y9P7 68 aa1.32□□□□□ -2.2
SNHG1-220ENST00000544550 UQCRQO14949 82 aa1.32□□□□□ -2.2
SNHG1-220ENST00000544550 M0R143 59 aa1.31□□□□□ -2.2
SNHG1-220ENST00000544550 TAX1BP3O14907 124 aa1.3□□□□□ -2.2
SNHG1-220ENST00000544550 SPTSSBQ8NFR3 76 aa1.29□□□□□ -2.2
SNHG1-220ENST00000544550 DMAC1Q96GE9 116 aa1.28□□□□□ -2.2
SNHG1-220ENST00000544550 C10orf95Q9H7T3 257 aa1.28□□□□□ -2.2
SNHG1-220ENST00000544550 SYNE1Q8NF91 8797 aaKnown RBP1.27□□□□□ -2.21
SNHG1-220ENST00000544550 COL5A1-AS1Q5SY13 56 aa1.27□□□□□ -2.21
SNHG1-220ENST00000544550 LINC00208Q96KT6 92 aa1.27□□□□□ -2.21
SNHG1-220ENST00000544550 KRTAP12-3P60328 96 aa1.24□□□□□ -2.21
SNHG1-220ENST00000544550 SMIM20Q8N5G0 67 aa1.24□□□□□ -2.21
SNHG1-220ENST00000544550 KRTAP13-4Q3LI77 160 aa1.23□□□□□ -2.21
SNHG1-220ENST00000544550 GTF2H5Q6ZYL4 71 aa1.23□□□□□ -2.21
SNHG1-220ENST00000544550 F8W1H4 67 aa1.22□□□□□ -2.21
SNHG1-220ENST00000544550 ACYP2P14621 99 aa1.22□□□□□ -2.21
SNHG1-220ENST00000544550 ETDBQ3ZM63 59 aa1.22□□□□□ -2.21
SNHG1-220ENST00000544550 A0A1B0GV90 55 aa1.21□□□□□ -2.22
SNHG1-220ENST00000544550 CHKB-CPT1BH3BT56 60 aa1.21□□□□□ -2.22
SNHG1-220ENST00000544550 TNP1P09430 55 aa1.21□□□□□ -2.22
SNHG1-220ENST00000544550 ATP5EP2Q5VTU8 51 aa1.21□□□□□ -2.22
SNHG1-220ENST00000544550 COA5Q86WW8 74 aa1.21□□□□□ -2.22
SNHG1-220ENST00000544550 KRTAP21-2Q3LI59 83 aa1.2□□□□□ -2.22
SNHG1-220ENST00000544550 MT1AP04731 61 aa1.19□□□□□ -2.22
SNHG1-220ENST00000544550 Q1T7F1 81 aa1.19□□□□□ -2.22
SNHG1-220ENST00000544550 KRTAP6-1Q3LI64 71 aa1.18□□□□□ -2.22
SNHG1-220ENST00000544550 KRTAP6-2Q3LI66 62 aa1.18□□□□□ -2.22
SNHG1-220ENST00000544550 SCGB1A1P11684 91 aa1.17□□□□□ -2.22
SNHG1-220ENST00000544550 KRTAP12-1P59990 96 aa1.15□□□□□ -2.23
SNHG1-220ENST00000544550 LINC00643Q86TS7 51 aa1.15□□□□□ -2.23
SNHG1-220ENST00000544550 SNURFQ9Y675 71 aa1.14□□□□□ -2.23
SNHG1-220ENST00000544550 J3QR89 54 aa1.13□□□□□ -2.23
SNHG1-220ENST00000544550 SPATA8Q6RVD6 105 aa1.13□□□□□ -2.23
SNHG1-220ENST00000544550 SERP1Q9Y6X1 66 aa1.13□□□□□ -2.23
SNHG1-220ENST00000544550 K7ERU9 68 aa1.12□□□□□ -2.23
SNHG1-220ENST00000544550 ROMO1P60602 79 aa1.12□□□□□ -2.23
SNHG1-220ENST00000544550 RPS28P62857 69 aaKnown RBP1.1□□□□□ -2.23
SNHG1-220ENST00000544550 COX7CP15954 63 aa1.07□□□□□ -2.24
SNHG1-220ENST00000544550 INE1O15225 51 aa1.06□□□□□ -2.24
SNHG1-220ENST00000544550 SERP2Q8N6R1 65 aa1.05□□□□□ -2.24
SNHG1-220ENST00000544550 CDC42SE1Q9NRR8 79 aa1.05□□□□□ -2.24
SNHG1-220ENST00000544550 BRK1Q8WUW1 75 aa1.03□□□□□ -2.24
SNHG1-220ENST00000544550 CCDC179H3BU77 68 aa1.01□□□□□ -2.25
SNHG1-220ENST00000544550 H7BZZ5 65 aa1.01□□□□□ -2.25
SNHG1-220ENST00000544550 PHGR1C9JFL3 82 aa1□□□□□ -2.25
SNHG1-220ENST00000544550 A0A1B0GU69 56 aa0.98□□□□□ -2.25
SNHG1-220ENST00000544550 MIR22HGQ0VDD5 57 aa0.98□□□□□ -2.25
SNHG1-220ENST00000544550 PRR15LQ9BU68 103 aa0.97□□□□□ -2.25
SNHG1-220ENST00000544550 ATP5EP56381 51 aaPredicted RBP0.96□□□□□ -2.26
SNHG1-220ENST00000544550 LINC01558Q9Y6Z2 57 aa0.94□□□□□ -2.26
SNHG1-220ENST00000544550 UQCR11O14957 56 aa0.9□□□□□ -2.27
SNHG1-220ENST00000544550 KRTAP21-1Q3LI58 79 aa0.79□□□□□ -2.28
SNHG1-220ENST00000544550 MUC16Q8WXI7 14507 aa0.55□□□□□ -2.32
SNHG1-220ENST00000544550 PRM1P04553 51 aa0.43□□□□□ -2.34
Retrieved 78 of 20,778 RNA–protein pairs in 12.2 ms