RNA–Protein interactions for RNA: ENST00000544429.5

DDX55-211, Transcript of DEAD-box helicase 55, humanhuman

TSL 4

Gene DDX55, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-211ENST00000544429 KRTAP2-1Q9BYU5 128 aa6.9□□□□□ -1.3
DDX55-211ENST00000544429 KRTAP25-1Q3LHN0 102 aa6.89□□□□□ -1.31
DDX55-211ENST00000544429 LCE3BQ5TA77 95 aa6.87□□□□□ -1.31
DDX55-211ENST00000544429 MT1GP13640 62 aa6.85□□□□□ -1.31
DDX55-211ENST00000544429 MT1LQ93083 61 aa6.84□□□□□ -1.31
DDX55-211ENST00000544429 CDC42SE1Q9NRR8 79 aa6.77□□□□□ -1.33
DDX55-211ENST00000544429 KRTAP12-3P60328 96 aa6.76□□□□□ -1.33
DDX55-211ENST00000544429 PP632Q6XCG6 107 aa6.74□□□□□ -1.33
DDX55-211ENST00000544429 MT1MQ8N339 61 aa6.74□□□□□ -1.33
DDX55-211ENST00000544429 DSTQ03001 7570 aaKnown RBP6.7□□□□□ -1.34
DDX55-211ENST00000544429 KRTAP23-1A1A580 65 aa6.7□□□□□ -1.34
DDX55-211ENST00000544429 ROMO1P60602 79 aa6.62□□□□□ -1.35
DDX55-211ENST00000544429 KRTAP4-3Q9BYR4 195 aa6.56□□□□□ -1.36
DDX55-211ENST00000544429 KRTAP4-7Q9BYR0 210 aa6.5□□□□□ -1.37
DDX55-211ENST00000544429 KRTAP19-4Q3LI73 84 aa6.45□□□□□ -1.38
DDX55-211ENST00000544429 KRTAP15-1Q3LI76 137 aa6.42□□□□□ -1.38
DDX55-211ENST00000544429 LCE4AQ5TA78 99 aa6.32□□□□□ -1.4
DDX55-211ENST00000544429 KRTAP5-4Q6L8H1 288 aa6.32□□□□□ -1.4
DDX55-211ENST00000544429 KRTAP4-9Q9BYQ8 210 aa6.3□□□□□ -1.4
DDX55-211ENST00000544429 BRK1Q8WUW1 75 aa6.29□□□□□ -1.4
DDX55-211ENST00000544429 LCE3CQ5T5A8 94 aa6.27□□□□□ -1.41
DDX55-211ENST00000544429 LCE1DQ5T752 114 aa6.23□□□□□ -1.41
DDX55-211ENST00000544429 KRTAP5-5Q701N2 237 aaPredicted RBP6.22□□□□□ -1.41
DDX55-211ENST00000544429 MT4P47944 62 aa6.15□□□□□ -1.42
DDX55-211ENST00000544429 LOC100996750A0A140TA64 210 aa6.14□□□□□ -1.43
DDX55-211ENST00000544429 HMCN1Q96RW7 5635 aa6.07□□□□□ -1.44
DDX55-211ENST00000544429 KRTAP4-6Q9BYQ5 205 aa6.07□□□□□ -1.44
DDX55-211ENST00000544429 KRTAP9-6A8MVA2 160 aa5.95□□□□□ -1.46
DDX55-211ENST00000544429 PMAIP1Q13794 54 aa5.93□□□□□ -1.46
DDX55-211ENST00000544429 SPRR5A0A1B0GTR4 108 aa5.91□□□□□ -1.46
DDX55-211ENST00000544429 KRTAP20-2Q3LI61 65 aa5.89□□□□□ -1.47
DDX55-211ENST00000544429 KRTAP12-4P60329 112 aa5.88□□□□□ -1.47
DDX55-211ENST00000544429 MT1AP04731 61 aa5.82□□□□□ -1.48
DDX55-211ENST00000544429 SYNE1Q8NF91 8797 aaKnown RBP5.8□□□□□ -1.48
DDX55-211ENST00000544429 GPR98Q8WXG9 6306 aa5.8□□□□□ -1.48
DDX55-211ENST00000544429 KRTAP6-1Q3LI64 71 aa5.77□□□□□ -1.49
DDX55-211ENST00000544429 KRTAP5-3Q6L8H2 238 aa5.75□□□□□ -1.49
DDX55-211ENST00000544429 PRO0628Q9UI54 55 aa5.75□□□□□ -1.49
DDX55-211ENST00000544429 AHNAK2Q8IVF2 5795 aa5.73□□□□□ -1.49
DDX55-211ENST00000544429 KRTAP5-10Q6L8G5 202 aa5.68□□□□□ -1.5
DDX55-211ENST00000544429 PRAC1Q96KF2 57 aa5.66□□□□□ -1.5
DDX55-211ENST00000544429 KRTAP5-2Q701N4 177 aa5.59□□□□□ -1.51
DDX55-211ENST00000544429 KRTAP9-4Q9BYQ2 154 aa5.59□□□□□ -1.51
DDX55-211ENST00000544429 KRTAP6-2Q3LI66 62 aa5.44□□□□□ -1.54
DDX55-211ENST00000544429 KTN1-AS1Q86SY8 53 aa5.44□□□□□ -1.54
DDX55-211ENST00000544429 KRTAP5-7Q6L8G8 165 aa5.41□□□□□ -1.54
DDX55-211ENST00000544429 KRTAP4-11Q9BYQ6 195 aa5.3□□□□□ -1.56
DDX55-211ENST00000544429 MT3P25713 68 aa5.29□□□□□ -1.56
DDX55-211ENST00000544429 KRTAP5-8O75690 187 aa5.15□□□□□ -1.59
DDX55-211ENST00000544429 OBSCNQ5VST9 7968 aa5.09□□□□□ -1.6
DDX55-211ENST00000544429 SVIPQ8NHG7 77 aa5.08□□□□□ -1.6
DDX55-211ENST00000544429 KRTAP5-1Q6L8H4 278 aa4.95□□□□□ -1.62
DDX55-211ENST00000544429 LCE1EQ5T753 118 aa4.84□□□□□ -1.63
DDX55-211ENST00000544429 KRTAP9-9Q9BYP9 154 aa4.76□□□□□ -1.65
DDX55-211ENST00000544429 MUC5ACP98088 5654 aa4.72□□□□□ -1.65
DDX55-211ENST00000544429 LUZP6Q538Z0 58 aa4.69□□□□□ -1.66
DDX55-211ENST00000544429 MUC5BQ9HC84 5762 aaPredicted RBP4.63□□□□□ -1.67
DDX55-211ENST00000544429 AHNAKQ09666 5890 aaKnown RBP4.55□□□□□ -1.68
DDX55-211ENST00000544429 LCE3DQ9BYE3 92 aa4.55□□□□□ -1.68
DDX55-211ENST00000544429 KRTAP4-2Q9BYR5 136 aa4.55□□□□□ -1.68
DDX55-211ENST00000544429 LCE1CQ5T751 118 aa4.49□□□□□ -1.69
DDX55-211ENST00000544429 LCE1BQ5T7P3 118 aa4.49□□□□□ -1.69
DDX55-211ENST00000544429 LCE3EQ5T5B0 92 aa4.33□□□□□ -1.72
DDX55-211ENST00000544429 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.16□□□□□ -1.74
DDX55-211ENST00000544429 KRTAP5-11Q6L8G4 156 aa4.05□□□□□ -1.76
DDX55-211ENST00000544429 NDUFAF8A1L188 74 aa4.02□□□□□ -1.77
DDX55-211ENST00000544429 KRTAP4-12Q9BQ66 201 aa3.94□□□□□ -1.78
DDX55-211ENST00000544429 LCE1FQ5T754 118 aa3.87□□□□□ -1.79
DDX55-211ENST00000544429 KRTAP21-2Q3LI59 83 aa3.83□□□□□ -1.8
DDX55-211ENST00000544429 PHGR1C9JFL3 82 aa3.49□□□□□ -1.85
DDX55-211ENST00000544429 PRM1P04553 51 aa3.39□□□□□ -1.87
DDX55-211ENST00000544429 KRTAP4-4Q9BYR3 166 aa3.38□□□□□ -1.87
DDX55-211ENST00000544429 INE1O15225 51 aa3.29□□□□□ -1.88
DDX55-211ENST00000544429 A0A0A0MQY5 61 aa3.24□□□□□ -1.89
DDX55-211ENST00000544429 MUC19Q7Z5P9 8384 aa3.11□□□□□ -1.91
DDX55-211ENST00000544429 H3BS24 57 aa2.9□□□□□ -1.95
DDX55-211ENST00000544429 KRTAP21-1Q3LI58 79 aa2.46□□□□□ -2.02
DDX55-211ENST00000544429 MUC16Q8WXI7 14507 aa2.19□□□□□ -2.06
Retrieved 78 of 20,778 RNA–protein pairs in 91.1 ms