RNA–Protein interactions for RNA: ENST00000541169.1

VPS33A-205, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-205ENST00000541169 KRTAP2-3P0C7H8 128 aa6.87□□□□□ -1.31
VPS33A-205ENST00000541169 KRTAP2-4Q9BYR9 128 aa6.87□□□□□ -1.31
VPS33A-205ENST00000541169 ROMO1P60602 79 aa6.85□□□□□ -1.31
VPS33A-205ENST00000541169 KRTAP19-3Q7Z4W3 81 aa6.84□□□□□ -1.31
VPS33A-205ENST00000541169 LCE5AQ5TCM9 118 aa6.8□□□□□ -1.32
VPS33A-205ENST00000541169 MT1GP13640 62 aa6.77□□□□□ -1.33
VPS33A-205ENST00000541169 PP632Q6XCG6 107 aa6.77□□□□□ -1.33
VPS33A-205ENST00000541169 KRTAP12-3P60328 96 aa6.76□□□□□ -1.33
VPS33A-205ENST00000541169 MT1LQ93083 61 aa6.7□□□□□ -1.34
VPS33A-205ENST00000541169 BRK1Q8WUW1 75 aa6.68□□□□□ -1.34
VPS33A-205ENST00000541169 KRTAP2-2Q9BYT5 123 aa6.67□□□□□ -1.34
VPS33A-205ENST00000541169 KRTAP2-1Q9BYU5 128 aa6.67□□□□□ -1.34
VPS33A-205ENST00000541169 LCE3BQ5TA77 95 aa6.66□□□□□ -1.34
VPS33A-205ENST00000541169 KRTAP19-4Q3LI73 84 aa6.62□□□□□ -1.35
VPS33A-205ENST00000541169 MT1MQ8N339 61 aa6.57□□□□□ -1.36
VPS33A-205ENST00000541169 KRTAP4-12Q9BQ66 201 aa6.53□□□□□ -1.36
VPS33A-205ENST00000541169 KRTAP15-1Q3LI76 137 aa6.47□□□□□ -1.37
VPS33A-205ENST00000541169 DSTQ03001 7570 aaKnown RBP6.38□□□□□ -1.39
VPS33A-205ENST00000541169 PMAIP1Q13794 54 aa6.34□□□□□ -1.39
VPS33A-205ENST00000541169 KRTAP9-9Q9BYP9 154 aa6.34□□□□□ -1.39
VPS33A-205ENST00000541169 KRTAP9-4Q9BYQ2 154 aa6.34□□□□□ -1.39
VPS33A-205ENST00000541169 KRTAP4-3Q9BYR4 195 aa6.3□□□□□ -1.4
VPS33A-205ENST00000541169 KRTAP4-7Q9BYR0 210 aa6.28□□□□□ -1.4
VPS33A-205ENST00000541169 LCE3CQ5T5A8 94 aa6.27□□□□□ -1.41
VPS33A-205ENST00000541169 PRO0628Q9UI54 55 aa6.22□□□□□ -1.41
VPS33A-205ENST00000541169 LCE4AQ5TA78 99 aa6.17□□□□□ -1.42
VPS33A-205ENST00000541169 KRTAP5-4Q6L8H1 288 aa6.09□□□□□ -1.43
VPS33A-205ENST00000541169 LCE1DQ5T752 114 aa6.06□□□□□ -1.44
VPS33A-205ENST00000541169 KRTAP5-5Q701N2 237 aaPredicted RBP6.01□□□□□ -1.45
VPS33A-205ENST00000541169 KRTAP4-9Q9BYQ8 210 aa6□□□□□ -1.45
VPS33A-205ENST00000541169 MT4P47944 62 aa5.93□□□□□ -1.46
VPS33A-205ENST00000541169 PRAC1Q96KF2 57 aa5.87□□□□□ -1.47
VPS33A-205ENST00000541169 KRTAP12-4P60329 112 aa5.85□□□□□ -1.47
VPS33A-205ENST00000541169 KTN1-AS1Q86SY8 53 aa5.85□□□□□ -1.47
VPS33A-205ENST00000541169 SPRR5A0A1B0GTR4 108 aa5.8□□□□□ -1.48
VPS33A-205ENST00000541169 KRTAP9-6A8MVA2 160 aa5.79□□□□□ -1.48
VPS33A-205ENST00000541169 KRTAP4-2Q9BYR5 136 aa5.76□□□□□ -1.49
VPS33A-205ENST00000541169 HMCN1Q96RW7 5635 aa5.74□□□□□ -1.49
VPS33A-205ENST00000541169 MT1AP04731 61 aa5.73□□□□□ -1.49
VPS33A-205ENST00000541169 KRTAP20-2Q3LI61 65 aa5.69□□□□□ -1.5
VPS33A-205ENST00000541169 H3BS24 57 aa5.68□□□□□ -1.5
VPS33A-205ENST00000541169 KRTAP4-11Q9BYQ6 195 aa5.68□□□□□ -1.5
VPS33A-205ENST00000541169 KRTAP6-1Q3LI64 71 aa5.61□□□□□ -1.51
VPS33A-205ENST00000541169 SVIPQ8NHG7 77 aa5.52□□□□□ -1.53
VPS33A-205ENST00000541169 KRTAP5-3Q6L8H2 238 aa5.5□□□□□ -1.53
VPS33A-205ENST00000541169 SYNE1Q8NF91 8797 aaKnown RBP5.49□□□□□ -1.53
VPS33A-205ENST00000541169 GPR98Q8WXG9 6306 aa5.46□□□□□ -1.54
VPS33A-205ENST00000541169 KRTAP5-2Q701N4 177 aa5.39□□□□□ -1.55
VPS33A-205ENST00000541169 KRTAP5-10Q6L8G5 202 aa5.37□□□□□ -1.55
VPS33A-205ENST00000541169 AHNAK2Q8IVF2 5795 aa5.34□□□□□ -1.55
VPS33A-205ENST00000541169 KRTAP6-2Q3LI66 62 aa5.31□□□□□ -1.56
VPS33A-205ENST00000541169 MT3P25713 68 aa5.27□□□□□ -1.57
VPS33A-205ENST00000541169 KRTAP5-7Q6L8G8 165 aa5.14□□□□□ -1.59
VPS33A-205ENST00000541169 LUZP6Q538Z0 58 aa5.12□□□□□ -1.59
VPS33A-205ENST00000541169 KRTAP5-8O75690 187 aa4.91□□□□□ -1.62
VPS33A-205ENST00000541169 OBSCNQ5VST9 7968 aa4.84□□□□□ -1.63
VPS33A-205ENST00000541169 LCE1EQ5T753 118 aa4.79□□□□□ -1.64
VPS33A-205ENST00000541169 KRTAP5-1Q6L8H4 278 aa4.74□□□□□ -1.65
VPS33A-205ENST00000541169 LCE3DQ9BYE3 92 aa4.62□□□□□ -1.67
VPS33A-205ENST00000541169 MUC5ACP98088 5654 aa4.43□□□□□ -1.7
VPS33A-205ENST00000541169 LCE1CQ5T751 118 aa4.42□□□□□ -1.7
VPS33A-205ENST00000541169 LCE1BQ5T7P3 118 aa4.42□□□□□ -1.7
VPS33A-205ENST00000541169 LCE3EQ5T5B0 92 aa4.41□□□□□ -1.7
VPS33A-205ENST00000541169 NDUFAF8A1L188 74 aa4.34□□□□□ -1.71
VPS33A-205ENST00000541169 MUC5BQ9HC84 5762 aaPredicted RBP4.32□□□□□ -1.72
VPS33A-205ENST00000541169 AHNAKQ09666 5890 aaKnown RBP4.29□□□□□ -1.72
VPS33A-205ENST00000541169 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.08□□□□□ -1.76
VPS33A-205ENST00000541169 KRTAP5-11Q6L8G4 156 aa3.95□□□□□ -1.78
VPS33A-205ENST00000541169 LCE1FQ5T754 118 aa3.82□□□□□ -1.8
VPS33A-205ENST00000541169 A0A0A0MQY5 61 aa3.76□□□□□ -1.81
VPS33A-205ENST00000541169 KRTAP21-2Q3LI59 83 aa3.71□□□□□ -1.82
VPS33A-205ENST00000541169 INE1O15225 51 aa3.7□□□□□ -1.82
VPS33A-205ENST00000541169 PRM1P04553 51 aa3.46□□□□□ -1.86
VPS33A-205ENST00000541169 PHGR1C9JFL3 82 aa3.39□□□□□ -1.87
VPS33A-205ENST00000541169 KRTAP4-4Q9BYR3 166 aa3.25□□□□□ -1.89
VPS33A-205ENST00000541169 MUC19Q7Z5P9 8384 aa2.94□□□□□ -1.94
VPS33A-205ENST00000541169 KRTAP21-1Q3LI58 79 aa2.41□□□□□ -2.02
VPS33A-205ENST00000541169 MUC16Q8WXI7 14507 aa2.11□□□□□ -2.07
Retrieved 78 of 20,778 RNA–protein pairs in 115.3 ms