RNA–Protein interactions for RNA: ENST00000540090.5

LPCAT3-210, Transcript of lysophosphatidylcholine acyltransferase 3, humanhuman

TSL 1 (best)

Gene LPCAT3, Length 974 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LPCAT3-210ENST00000540090 COA5Q86WW8 74 aa6.65□□□□□ -1.34
LPCAT3-210ENST00000540090 TNP1P09430 55 aa6.62□□□□□ -1.35
LPCAT3-210ENST00000540090 KRTAP5-5Q701N2 237 aaPredicted RBP6.61□□□□□ -1.35
LPCAT3-210ENST00000540090 SERP2Q8N6R1 65 aa6.6□□□□□ -1.35
LPCAT3-210ENST00000540090 KRTAP12-4P60329 112 aa6.56□□□□□ -1.36
LPCAT3-210ENST00000540090 SYNE1Q8NF91 8797 aaKnown RBP6.52□□□□□ -1.37
LPCAT3-210ENST00000540090 SMIM26A0A096LP01 95 aa6.5□□□□□ -1.37
LPCAT3-210ENST00000540090 KRTAP12-3P60328 96 aa6.5□□□□□ -1.37
LPCAT3-210ENST00000540090 A8MU10 97 aa6.45□□□□□ -1.38
LPCAT3-210ENST00000540090 COX7CP15954 63 aa6.43□□□□□ -1.38
LPCAT3-210ENST00000540090 LOC100996750A0A140TA64 210 aa6.35□□□□□ -1.39
LPCAT3-210ENST00000540090 A0A1B0GU69 56 aa6.32□□□□□ -1.4
LPCAT3-210ENST00000540090 KRTAP4-11Q9BYQ6 195 aa6.29□□□□□ -1.4
LPCAT3-210ENST00000540090 H7BZZ5 65 aa6.28□□□□□ -1.4
LPCAT3-210ENST00000540090 ANAPC13Q9BS18 74 aa6.28□□□□□ -1.4
LPCAT3-210ENST00000540090 KRTAP5-2Q701N4 177 aa6.16□□□□□ -1.42
LPCAT3-210ENST00000540090 CCDC179H3BU77 68 aa6.13□□□□□ -1.43
LPCAT3-210ENST00000540090 KRTAP19-4Q3LI73 84 aa6.13□□□□□ -1.43
LPCAT3-210ENST00000540090 KRTAP5-8O75690 187 aa6.1□□□□□ -1.43
LPCAT3-210ENST00000540090 AHNAKQ09666 5890 aaKnown RBP6.09□□□□□ -1.43
LPCAT3-210ENST00000540090 MUC5BQ9HC84 5762 aaPredicted RBP6.08□□□□□ -1.44
LPCAT3-210ENST00000540090 MUC5ACP98088 5654 aa6.06□□□□□ -1.44
LPCAT3-210ENST00000540090 ATP5EP56381 51 aaPredicted RBP6.05□□□□□ -1.44
LPCAT3-210ENST00000540090 KRTAP6-1Q3LI64 71 aa5.99□□□□□ -1.45
LPCAT3-210ENST00000540090 MT1AP04731 61 aa5.98□□□□□ -1.45
LPCAT3-210ENST00000540090 KRTAP25-1Q3LHN0 102 aa5.98□□□□□ -1.45
LPCAT3-210ENST00000540090 PRR15LQ9BU68 103 aa5.97□□□□□ -1.45
LPCAT3-210ENST00000540090 TMEM258P61165 79 aa5.94□□□□□ -1.46
LPCAT3-210ENST00000540090 LCE3CQ5T5A8 94 aa5.93□□□□□ -1.46
LPCAT3-210ENST00000540090 KRTAP15-1Q3LI76 137 aa5.9□□□□□ -1.46
LPCAT3-210ENST00000540090 OBSCNQ5VST9 7968 aa5.88□□□□□ -1.47
LPCAT3-210ENST00000540090 KRTAP9-9Q9BYP9 154 aa5.86□□□□□ -1.47
LPCAT3-210ENST00000540090 KRTAP9-4Q9BYQ2 154 aa5.86□□□□□ -1.47
LPCAT3-210ENST00000540090 LINC01558Q9Y6Z2 57 aa5.83□□□□□ -1.48
LPCAT3-210ENST00000540090 KRTAP6-2Q3LI66 62 aa5.82□□□□□ -1.48
LPCAT3-210ENST00000540090 SVIPQ8NHG7 77 aa5.78□□□□□ -1.48
LPCAT3-210ENST00000540090 UQCR11O14957 56 aa5.77□□□□□ -1.49
LPCAT3-210ENST00000540090 KRTAP23-1A1A580 65 aa5.76□□□□□ -1.49
LPCAT3-210ENST00000540090 KRTAP9-6A8MVA2 160 aa5.63□□□□□ -1.51
LPCAT3-210ENST00000540090 V9GYY9 64 aa5.63□□□□□ -1.51
LPCAT3-210ENST00000540090 KRTAP5-1Q6L8H4 278 aa5.61□□□□□ -1.51
LPCAT3-210ENST00000540090 MIR22HGQ0VDD5 57 aa5.59□□□□□ -1.51
LPCAT3-210ENST00000540090 K7ERS5 55 aa5.57□□□□□ -1.52
LPCAT3-210ENST00000540090 Q1T7F1 81 aa5.57□□□□□ -1.52
LPCAT3-210ENST00000540090 PSPHP1O15172 72 aa5.52□□□□□ -1.53
LPCAT3-210ENST00000540090 MT3P25713 68 aa5.51□□□□□ -1.53
LPCAT3-210ENST00000540090 PCP4P48539 62 aa5.49□□□□□ -1.53
LPCAT3-210ENST00000540090 RPS28P62857 69 aaKnown RBP5.45□□□□□ -1.54
LPCAT3-210ENST00000540090 A6NED7 52 aa5.37□□□□□ -1.55
LPCAT3-210ENST00000540090 CDC42SE1Q9NRR8 79 aa5.21□□□□□ -1.58
LPCAT3-210ENST00000540090 LCE1EQ5T753 118 aa5.2□□□□□ -1.58
LPCAT3-210ENST00000540090 H3BS24 57 aa5.17□□□□□ -1.58
LPCAT3-210ENST00000540090 ROMO1P60602 79 aa5.11□□□□□ -1.59
LPCAT3-210ENST00000540090 KRTAP4-2Q9BYR5 136 aa4.95□□□□□ -1.62
LPCAT3-210ENST00000540090 LCE1BQ5T7P3 118 aa4.9□□□□□ -1.63
LPCAT3-210ENST00000540090 LCE1CQ5T751 118 aa4.82□□□□□ -1.64
LPCAT3-210ENST00000540090 BRK1Q8WUW1 75 aa4.77□□□□□ -1.65
LPCAT3-210ENST00000540090 KRTAP4-12Q9BQ66 201 aa4.66□□□□□ -1.66
LPCAT3-210ENST00000540090 PMAIP1Q13794 54 aa4.52□□□□□ -1.69
LPCAT3-210ENST00000540090 A0A0A0MQY5 61 aa4.49□□□□□ -1.69
LPCAT3-210ENST00000540090 KRTAP5-11Q6L8G4 156 aa4.45□□□□□ -1.7
LPCAT3-210ENST00000540090 LCE1FQ5T754 118 aa4.42□□□□□ -1.7
LPCAT3-210ENST00000540090 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.33□□□□□ -1.72
LPCAT3-210ENST00000540090 PRO0628Q9UI54 55 aa4.3□□□□□ -1.72
LPCAT3-210ENST00000540090 PRAC1Q96KF2 57 aa4.26□□□□□ -1.73
LPCAT3-210ENST00000540090 PHGR1C9JFL3 82 aa4.21□□□□□ -1.74
LPCAT3-210ENST00000540090 LCE3DQ9BYE3 92 aa4.17□□□□□ -1.74
LPCAT3-210ENST00000540090 KTN1-AS1Q86SY8 53 aa4.07□□□□□ -1.76
LPCAT3-210ENST00000540090 KRTAP21-2Q3LI59 83 aa3.97□□□□□ -1.77
LPCAT3-210ENST00000540090 LCE3EQ5T5B0 92 aa3.84□□□□□ -1.79
LPCAT3-210ENST00000540090 KRTAP4-4Q9BYR3 166 aa3.69□□□□□ -1.82
LPCAT3-210ENST00000540090 MUC19Q7Z5P9 8384 aa3.67□□□□□ -1.82
LPCAT3-210ENST00000540090 LUZP6Q538Z0 58 aa3.66□□□□□ -1.82
LPCAT3-210ENST00000540090 NDUFAF8A1L188 74 aa3.37□□□□□ -1.87
LPCAT3-210ENST00000540090 KRTAP21-1Q3LI58 79 aa3.21□□□□□ -1.9
LPCAT3-210ENST00000540090 MUC16Q8WXI7 14507 aa2.62□□□□□ -1.99
LPCAT3-210ENST00000540090 PRM1P04553 51 aa2.58□□□□□ -2
LPCAT3-210ENST00000540090 INE1O15225 51 aa2.49□□□□□ -2.01
Retrieved 78 of 20,778 RNA–protein pairs in 45.6 ms