RNA–Protein interactions for RNA: ENST00000539442.1

LEMD3-202, Transcript of LEM domain containing 3, humanhuman

TSL 2

Gene LEMD3, Length 932 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LEMD3-202ENST00000539442 CRCT1Q9UGL9 99 aa4.38□□□□□ -1.71
LEMD3-202ENST00000539442 C10orf95Q9H7T3 257 aa4.36□□□□□ -1.71
LEMD3-202ENST00000539442 KRTAP2-2Q9BYT5 123 aa4.34□□□□□ -1.71
LEMD3-202ENST00000539442 ROMO1P60602 79 aa4.33□□□□□ -1.72
LEMD3-202ENST00000539442 PMAIP1Q13794 54 aa4.33□□□□□ -1.72
LEMD3-202ENST00000539442 FCGBPQ9Y6R7 5405 aaPredicted RBP4.32□□□□□ -1.72
LEMD3-202ENST00000539442 TNP1P09430 55 aa4.28□□□□□ -1.72
LEMD3-202ENST00000539442 KRTAP25-1Q3LHN0 102 aa4.27□□□□□ -1.73
LEMD3-202ENST00000539442 KRTAP10-12P60413 245 aa4.22□□□□□ -1.73
LEMD3-202ENST00000539442 KTN1-AS1Q86SY8 53 aa4.12□□□□□ -1.75
LEMD3-202ENST00000539442 OBSCNQ5VST9 7968 aa4.11□□□□□ -1.75
LEMD3-202ENST00000539442 LCE3AQ5TA76 89 aa4.1□□□□□ -1.75
LEMD3-202ENST00000539442 PP632Q6XCG6 107 aa4.1□□□□□ -1.75
LEMD3-202ENST00000539442 MACF1Q9UPN3 7388 aaKnown RBP4.09□□□□□ -1.75
LEMD3-202ENST00000539442 A0A0A0MQY5 61 aa4.09□□□□□ -1.75
LEMD3-202ENST00000539442 KMT2DO14686 5537 aa4.08□□□□□ -1.76
LEMD3-202ENST00000539442 KRTAP4-3Q9BYR4 195 aa4.07□□□□□ -1.76
LEMD3-202ENST00000539442 KRTAP8-1Q8IUC2 63 aa4.05□□□□□ -1.76
LEMD3-202ENST00000539442 KRTAP5-2Q701N4 177 aa4.04□□□□□ -1.76
LEMD3-202ENST00000539442 PRAC1Q96KF2 57 aa4.04□□□□□ -1.76
LEMD3-202ENST00000539442 SYNE2Q8WXH0 6885 aaKnown RBP3.99□□□□□ -1.77
LEMD3-202ENST00000539442 KRTAP19-5Q3LI72 72 aa3.97□□□□□ -1.77
LEMD3-202ENST00000539442 KRTAP19-7Q3SYF9 63 aa3.96□□□□□ -1.78
LEMD3-202ENST00000539442 KRTAP12-3P60328 96 aa3.95□□□□□ -1.78
LEMD3-202ENST00000539442 KRTAP6-3Q3LI67 103 aa3.94□□□□□ -1.78
LEMD3-202ENST00000539442 SPRR2FQ96RM1 72 aa3.91□□□□□ -1.78
LEMD3-202ENST00000539442 KRTAP9-6A8MVA2 160 aa3.9□□□□□ -1.79
LEMD3-202ENST00000539442 MT1EP04732 61 aa3.9□□□□□ -1.79
LEMD3-202ENST00000539442 MT3P25713 68 aa3.9□□□□□ -1.79
LEMD3-202ENST00000539442 MUC12Q9UKN1 5478 aa3.85□□□□□ -1.79
LEMD3-202ENST00000539442 MDN1Q9NU22 5596 aa3.82□□□□□ -1.8
LEMD3-202ENST00000539442 MT1LQ93083 61 aa3.81□□□□□ -1.8
LEMD3-202ENST00000539442 KRTAP19-3Q7Z4W3 81 aa3.79□□□□□ -1.8
LEMD3-202ENST00000539442 SPRR2EP22531 72 aa3.76□□□□□ -1.81
LEMD3-202ENST00000539442 SPRR2BP35325 72 aa3.76□□□□□ -1.81
LEMD3-202ENST00000539442 SPRR2AP35326 72 aa3.76□□□□□ -1.81
LEMD3-202ENST00000539442 MT1GP13640 62 aa3.75□□□□□ -1.81
LEMD3-202ENST00000539442 NEBP20929 6669 aa3.72□□□□□ -1.81
LEMD3-202ENST00000539442 LCE3CQ5T5A8 94 aa3.68□□□□□ -1.82
LEMD3-202ENST00000539442 MT1MQ8N339 61 aa3.68□□□□□ -1.82
LEMD3-202ENST00000539442 SPRR2DP22532 72 aa3.63□□□□□ -1.83
LEMD3-202ENST00000539442 SPRR5A0A1B0GTR4 108 aa3.56□□□□□ -1.84
LEMD3-202ENST00000539442 KRTAP5-8O75690 187 aa3.51□□□□□ -1.85
LEMD3-202ENST00000539442 DSTQ03001 7570 aaKnown RBP3.51□□□□□ -1.85
LEMD3-202ENST00000539442 KRTAP2-3P0C7H8 128 aa3.47□□□□□ -1.85
LEMD3-202ENST00000539442 KRTAP2-4Q9BYR9 128 aa3.47□□□□□ -1.85
LEMD3-202ENST00000539442 LCE1FQ5T754 118 aa3.46□□□□□ -1.86
LEMD3-202ENST00000539442 KRTAP20-1Q3LI63 56 aa3.44□□□□□ -1.86
LEMD3-202ENST00000539442 KRTAP2-1Q9BYU5 128 aa3.39□□□□□ -1.87
LEMD3-202ENST00000539442 LUZP6Q538Z0 58 aa3.37□□□□□ -1.87
LEMD3-202ENST00000539442 NDUFAF8A1L188 74 aa3.35□□□□□ -1.87
LEMD3-202ENST00000539442 KRTAP5-5Q701N2 237 aaPredicted RBP3.35□□□□□ -1.87
LEMD3-202ENST00000539442 MT1AP04731 61 aa3.25□□□□□ -1.89
LEMD3-202ENST00000539442 KRTAP6-1Q3LI64 71 aa3.19□□□□□ -1.9
LEMD3-202ENST00000539442 SYNE1Q8NF91 8797 aaKnown RBP3.16□□□□□ -1.9
LEMD3-202ENST00000539442 KRTAP12-4P60329 112 aa3.15□□□□□ -1.91
LEMD3-202ENST00000539442 MT4P47944 62 aa3.12□□□□□ -1.91
LEMD3-202ENST00000539442 HMCN1Q96RW7 5635 aa3.09□□□□□ -1.91
LEMD3-202ENST00000539442 KRTAP20-2Q3LI61 65 aa3.05□□□□□ -1.92
LEMD3-202ENST00000539442 LCE1CQ5T751 118 aa3□□□□□ -1.93
LEMD3-202ENST00000539442 LCE1BQ5T7P3 118 aa3□□□□□ -1.93
LEMD3-202ENST00000539442 KRTAP6-2Q3LI66 62 aa2.96□□□□□ -1.94
LEMD3-202ENST00000539442 GPR98Q8WXG9 6306 aa2.92□□□□□ -1.94
LEMD3-202ENST00000539442 LCE3EQ5T5B0 92 aa2.92□□□□□ -1.94
LEMD3-202ENST00000539442 AHNAK2Q8IVF2 5795 aa2.82□□□□□ -1.96
LEMD3-202ENST00000539442 LCE3DQ9BYE3 92 aa2.74□□□□□ -1.97
LEMD3-202ENST00000539442 KRTAP5-10Q6L8G5 202 aa2.67□□□□□ -1.98
LEMD3-202ENST00000539442 INE1O15225 51 aa2.64□□□□□ -1.99
LEMD3-202ENST00000539442 KRTAP5-7Q6L8G8 165 aa2.57□□□□□ -2
LEMD3-202ENST00000539442 MUC19Q7Z5P9 8384 aa2.53□□□□□ -2
LEMD3-202ENST00000539442 MUC5ACP98088 5654 aa2.51□□□□□ -2.01
LEMD3-202ENST00000539442 MUC5BQ9HC84 5762 aaPredicted RBP2.28□□□□□ -2.04
LEMD3-202ENST00000539442 AHNAKQ09666 5890 aaKnown RBP2.25□□□□□ -2.05
LEMD3-202ENST00000539442 PRM1P04553 51 aa2.23□□□□□ -2.05
LEMD3-202ENST00000539442 KRTAP21-2Q3LI59 83 aa2.18□□□□□ -2.06
LEMD3-202ENST00000539442 PHGR1C9JFL3 82 aa1.84□□□□□ -2.11
LEMD3-202ENST00000539442 KRTAP21-1Q3LI58 79 aa1.35□□□□□ -2.19
LEMD3-202ENST00000539442 MUC16Q8WXI7 14507 aa1.23□□□□□ -2.21
Retrieved 78 of 20,778 RNA–protein pairs in 127.6 ms