RNA–Protein interactions for RNA: ENST00000537824.2

CSMD1-215, Transcript of CUB and Sushi multiple domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CSMD1, Length 13,512 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-215ENST00000537824 RYR2Q92736 4967 aa1.59□□□□□ -2.15
CSMD1-215ENST00000537824 PCLOQ9Y6V0 5065 aa1.59□□□□□ -2.16
CSMD1-215ENST00000537824 KRTAP9-7A8MTY7 169 aa1.58□□□□□ -2.16
CSMD1-215ENST00000537824 KRTAP9-6A8MVA2 160 aa1.58□□□□□ -2.16
CSMD1-215ENST00000537824 LCE2DQ5TA82 110 aaPredicted RBP1.58□□□□□ -2.16
CSMD1-215ENST00000537824 EPPK1P58107 5090 aaKnown RBP1.57□□□□□ -2.16
CSMD1-215ENST00000537824 LRP2P98164 4655 aa1.56□□□□□ -2.16
CSMD1-215ENST00000537824 KRTAP19-2Q3LHN2 52 aa1.56□□□□□ -2.16
CSMD1-215ENST00000537824 MT1AP04731 61 aa1.56□□□□□ -2.16
CSMD1-215ENST00000537824 KRTAP9-2Q9BYQ4 174 aa1.56□□□□□ -2.16
CSMD1-215ENST00000537824 KMT2CQ8NEZ4 4911 aaKnown RBP1.56□□□□□ -2.16
CSMD1-215ENST00000537824 KRTAP19-7Q3SYF9 63 aa1.53□□□□□ -2.16
CSMD1-215ENST00000537824 KRTAP2-2Q9BYT5 123 aa1.52□□□□□ -2.17
CSMD1-215ENST00000537824 LCE1AQ5T7P2 110 aa1.51□□□□□ -2.17
CSMD1-215ENST00000537824 ABCA13Q86UQ4 5058 aa1.5□□□□□ -2.17
CSMD1-215ENST00000537824 LPAP08519 4548 aa1.5□□□□□ -2.17
CSMD1-215ENST00000537824 KRTAP6-1Q3LI64 71 aa1.49□□□□□ -2.17
CSMD1-215ENST00000537824 UBR4Q5T4S7 5183 aa1.48□□□□□ -2.17
CSMD1-215ENST00000537824 LCE5AQ5TCM9 118 aa1.48□□□□□ -2.17
CSMD1-215ENST00000537824 SYNE1Q8NF91 8797 aaKnown RBP1.46□□□□□ -2.18
CSMD1-215ENST00000537824 RNF213Q63HN8 5207 aa1.45□□□□□ -2.18
CSMD1-215ENST00000537824 KRTAP19-6Q3LI70 58 aa1.45□□□□□ -2.18
CSMD1-215ENST00000537824 HMCN2Q8NDA2 5059 aa1.44□□□□□ -2.18
CSMD1-215ENST00000537824 HERC1Q15751 4861 aa1.43□□□□□ -2.18
CSMD1-215ENST00000537824 KRTAP9-6A0A140TA67 174 aa1.42□□□□□ -2.18
CSMD1-215ENST00000537824 LCE1CQ5T751 118 aa1.42□□□□□ -2.18
CSMD1-215ENST00000537824 LCE1EQ5T753 118 aa1.42□□□□□ -2.18
CSMD1-215ENST00000537824 LCE1FQ5T754 118 aa1.42□□□□□ -2.18
CSMD1-215ENST00000537824 SYNE2Q8WXH0 6885 aaKnown RBP1.42□□□□□ -2.18
CSMD1-215ENST00000537824 LCE2AQ5TA79 106 aaPredicted RBP1.41□□□□□ -2.18
CSMD1-215ENST00000537824 KRTAP4-11Q9BYQ6 195 aa1.39□□□□□ -2.19
CSMD1-215ENST00000537824 KRTAP9-4Q9BYQ2 154 aa1.39□□□□□ -2.19
CSMD1-215ENST00000537824 GPR98Q8WXG9 6306 aa1.39□□□□□ -2.19
CSMD1-215ENST00000537824 LCE4AQ5TA78 99 aa1.38□□□□□ -2.19
CSMD1-215ENST00000537824 FSIP2Q5CZC0 6907 aa1.37□□□□□ -2.19
CSMD1-215ENST00000537824 MUC12Q9UKN1 5478 aa1.32□□□□□ -2.2
CSMD1-215ENST00000537824 MDN1Q9NU22 5596 aa1.32□□□□□ -2.2
CSMD1-215ENST00000537824 FAT4Q6V0I7 4981 aa1.31□□□□□ -2.2
CSMD1-215ENST00000537824 USH2AO75445 5202 aa1.28□□□□□ -2.2
CSMD1-215ENST00000537824 KRTAP6-3Q3LI67 103 aa1.28□□□□□ -2.2
CSMD1-215ENST00000537824 NEBP20929 6669 aa1.28□□□□□ -2.2
CSMD1-215ENST00000537824 KRTAP5-5Q701N2 237 aaPredicted RBP1.27□□□□□ -2.21
CSMD1-215ENST00000537824 KRTAP5-9P26371 169 aa1.26□□□□□ -2.21
CSMD1-215ENST00000537824 DSTQ03001 7570 aaKnown RBP1.24□□□□□ -2.21
CSMD1-215ENST00000537824 MUC2Q02817 5179 aa1.23□□□□□ -2.21
CSMD1-215ENST00000537824 KRTAP20-1Q3LI63 56 aa1.22□□□□□ -2.21
CSMD1-215ENST00000537824 KMT2DO14686 5537 aa1.22□□□□□ -2.21
CSMD1-215ENST00000537824 KRTAP4-4Q9BYR3 166 aa1.21□□□□□ -2.22
CSMD1-215ENST00000537824 KRTAP20-2Q3LI61 65 aa1.16□□□□□ -2.22
CSMD1-215ENST00000537824 FCGBPQ9Y6R7 5405 aaPredicted RBP1.15□□□□□ -2.22
CSMD1-215ENST00000537824 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.15□□□□□ -2.23
CSMD1-215ENST00000537824 MACF1Q9UPN3 7388 aaKnown RBP1.14□□□□□ -2.23
CSMD1-215ENST00000537824 AHNAK2Q8IVF2 5795 aa1.14□□□□□ -2.23
CSMD1-215ENST00000537824 KRTAP9-9Q9BYP9 154 aa1.13□□□□□ -2.23
CSMD1-215ENST00000537824 SSPOA2VEC9 5147 aa1.11□□□□□ -2.23
CSMD1-215ENST00000537824 KRTAP4-12Q9BQ66 201 aa1.1□□□□□ -2.23
CSMD1-215ENST00000537824 KRTAP4-2Q9BYR5 136 aa1.1□□□□□ -2.23
CSMD1-215ENST00000537824 OBSCNQ5VST9 7968 aa1.1□□□□□ -2.23
CSMD1-215ENST00000537824 KRTAP4-6Q9BYQ5 205 aa1.09□□□□□ -2.24
CSMD1-215ENST00000537824 KRTAP5-4Q6L8H1 288 aa1.07□□□□□ -2.24
CSMD1-215ENST00000537824 HMCN1Q96RW7 5635 aa1.03□□□□□ -2.24
CSMD1-215ENST00000537824 KRTAP5-6Q6L8G9 129 aaPredicted RBP0.99□□□□□ -2.25
CSMD1-215ENST00000537824 KRTAP5-2Q701N4 177 aa0.99□□□□□ -2.25
CSMD1-215ENST00000537824 AHNAKQ09666 5890 aaKnown RBP0.98□□□□□ -2.25
CSMD1-215ENST00000537824 KRTAP5-8O75690 187 aa0.97□□□□□ -2.25
CSMD1-215ENST00000537824 MUC19Q7Z5P9 8384 aa0.94□□□□□ -2.26
CSMD1-215ENST00000537824 KRTAP5-7Q6L8G8 165 aa0.94□□□□□ -2.26
CSMD1-215ENST00000537824 KRTAP5-3Q6L8H2 238 aa0.93□□□□□ -2.26
CSMD1-215ENST00000537824 MUC5ACP98088 5654 aa0.92□□□□□ -2.26
CSMD1-215ENST00000537824 MUC5BQ9HC84 5762 aaPredicted RBP0.92□□□□□ -2.26
CSMD1-215ENST00000537824 KRTAP5-10Q6L8G5 202 aa0.88□□□□□ -2.27
CSMD1-215ENST00000537824 KRTAP5-11Q6L8G4 156 aa0.87□□□□□ -2.27
CSMD1-215ENST00000537824 KRTAP5-1Q6L8H4 278 aa0.86□□□□□ -2.27
CSMD1-215ENST00000537824 KRTAP21-1Q3LI58 79 aa0.75□□□□□ -2.29
CSMD1-215ENST00000537824 KRTAP21-2Q3LI59 83 aa0.71□□□□□ -2.3
CSMD1-215ENST00000537824 PHGR1C9JFL3 82 aa0.7□□□□□ -2.3
CSMD1-215ENST00000537824 MUC16Q8WXI7 14507 aa0.62□□□□□ -2.31
Retrieved 77 of 20,778 RNA–protein pairs in 152.3 ms