RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 DSTQ03001 7570 aaKnown RBP4.72□□□□□ -1.65
VPS28-216ENST00000533806 MT1GP13640 62 aa4.66□□□□□ -1.66
VPS28-216ENST00000533806 MT1LQ93083 61 aa4.64□□□□□ -1.67
VPS28-216ENST00000533806 MT1MQ8N339 61 aa4.59□□□□□ -1.67
VPS28-216ENST00000533806 K7ERS5 55 aa4.57□□□□□ -1.68
VPS28-216ENST00000533806 KRTAP25-1Q3LHN0 102 aa4.57□□□□□ -1.68
VPS28-216ENST00000533806 PP632Q6XCG6 107 aa4.57□□□□□ -1.68
VPS28-216ENST00000533806 BRK1Q8WUW1 75 aa4.56□□□□□ -1.68
VPS28-216ENST00000533806 A6NED7 52 aa4.55□□□□□ -1.68
VPS28-216ENST00000533806 KRTAP12-3P60328 96 aa4.54□□□□□ -1.68
VPS28-216ENST00000533806 PRO0628Q9UI54 55 aa4.48□□□□□ -1.69
VPS28-216ENST00000533806 KRTAP4-3Q9BYR4 195 aa4.47□□□□□ -1.69
VPS28-216ENST00000533806 CDC42SE1Q9NRR8 79 aa4.46□□□□□ -1.7
VPS28-216ENST00000533806 KRTAP23-1A1A580 65 aa4.45□□□□□ -1.7
VPS28-216ENST00000533806 SVIPQ8NHG7 77 aa4.43□□□□□ -1.7
VPS28-216ENST00000533806 KRTAP4-7Q9BYR0 210 aa4.42□□□□□ -1.7
VPS28-216ENST00000533806 KRTAP4-9Q9BYQ8 210 aa4.37□□□□□ -1.71
VPS28-216ENST00000533806 ROMO1P60602 79 aa4.34□□□□□ -1.71
VPS28-216ENST00000533806 LCE4AQ5TA78 99 aa4.34□□□□□ -1.71
VPS28-216ENST00000533806 KRTAP5-4Q6L8H1 288 aa4.34□□□□□ -1.71
VPS28-216ENST00000533806 KRTAP19-4Q3LI73 84 aa4.33□□□□□ -1.72
VPS28-216ENST00000533806 HMCN1Q96RW7 5635 aa4.33□□□□□ -1.72
VPS28-216ENST00000533806 PMAIP1Q13794 54 aa4.31□□□□□ -1.72
VPS28-216ENST00000533806 LCE1DQ5T752 114 aa4.31□□□□□ -1.72
VPS28-216ENST00000533806 KRTAP15-1Q3LI76 137 aa4.29□□□□□ -1.72
VPS28-216ENST00000533806 MT4P47944 62 aa4.24□□□□□ -1.73
VPS28-216ENST00000533806 KRTAP5-5Q701N2 237 aaPredicted RBP4.24□□□□□ -1.73
VPS28-216ENST00000533806 GPR98Q8WXG9 6306 aa4.22□□□□□ -1.73
VPS28-216ENST00000533806 LCE3CQ5T5A8 94 aa4.21□□□□□ -1.74
VPS28-216ENST00000533806 KRTAP4-6Q9BYQ5 205 aa4.19□□□□□ -1.74
VPS28-216ENST00000533806 LOC100996750A0A140TA64 210 aa4.17□□□□□ -1.74
VPS28-216ENST00000533806 KTN1-AS1Q86SY8 53 aa4.14□□□□□ -1.75
VPS28-216ENST00000533806 AHNAK2Q8IVF2 5795 aa4.1□□□□□ -1.75
VPS28-216ENST00000533806 SYNE1Q8NF91 8797 aaKnown RBP4.07□□□□□ -1.76
VPS28-216ENST00000533806 SPRR5A0A1B0GTR4 108 aa4.05□□□□□ -1.76
VPS28-216ENST00000533806 KRTAP20-2Q3LI61 65 aa4.05□□□□□ -1.76
VPS28-216ENST00000533806 PRAC1Q96KF2 57 aa4.05□□□□□ -1.76
VPS28-216ENST00000533806 KRTAP9-6A8MVA2 160 aa4.01□□□□□ -1.77
VPS28-216ENST00000533806 KRTAP12-4P60329 112 aa4.01□□□□□ -1.77
VPS28-216ENST00000533806 KRTAP5-3Q6L8H2 238 aa3.96□□□□□ -1.78
VPS28-216ENST00000533806 KRTAP5-10Q6L8G5 202 aa3.95□□□□□ -1.78
VPS28-216ENST00000533806 MT1AP04731 61 aa3.94□□□□□ -1.78
VPS28-216ENST00000533806 KRTAP6-1Q3LI64 71 aa3.91□□□□□ -1.78
VPS28-216ENST00000533806 KRTAP5-2Q701N4 177 aa3.82□□□□□ -1.8
VPS28-216ENST00000533806 KRTAP9-4Q9BYQ2 154 aa3.8□□□□□ -1.8
VPS28-216ENST00000533806 KRTAP5-7Q6L8G8 165 aa3.78□□□□□ -1.8
VPS28-216ENST00000533806 KRTAP6-2Q3LI66 62 aa3.71□□□□□ -1.82
VPS28-216ENST00000533806 KRTAP4-11Q9BYQ6 195 aa3.66□□□□□ -1.82
VPS28-216ENST00000533806 OBSCNQ5VST9 7968 aa3.61□□□□□ -1.83
VPS28-216ENST00000533806 H3BS24 57 aa3.6□□□□□ -1.83
VPS28-216ENST00000533806 MT3P25713 68 aa3.59□□□□□ -1.83
VPS28-216ENST00000533806 KRTAP5-8O75690 187 aa3.56□□□□□ -1.84
VPS28-216ENST00000533806 KRTAP5-1Q6L8H4 278 aa3.4□□□□□ -1.87
VPS28-216ENST00000533806 MUC5BQ9HC84 5762 aaPredicted RBP3.39□□□□□ -1.87
VPS28-216ENST00000533806 MUC5ACP98088 5654 aa3.38□□□□□ -1.87
VPS28-216ENST00000533806 AHNAKQ09666 5890 aaKnown RBP3.37□□□□□ -1.87
VPS28-216ENST00000533806 A0A0A0MQY5 61 aa3.35□□□□□ -1.87
VPS28-216ENST00000533806 LCE1EQ5T753 118 aa3.3□□□□□ -1.88
VPS28-216ENST00000533806 KRTAP9-9Q9BYP9 154 aa3.29□□□□□ -1.88
VPS28-216ENST00000533806 LUZP6Q538Z0 58 aa3.26□□□□□ -1.89
VPS28-216ENST00000533806 NDUFAF8A1L188 74 aa3.25□□□□□ -1.89
VPS28-216ENST00000533806 KRTAP4-2Q9BYR5 136 aa3.11□□□□□ -1.91
VPS28-216ENST00000533806 LCE1CQ5T751 118 aa3.07□□□□□ -1.92
VPS28-216ENST00000533806 LCE1BQ5T7P3 118 aa3.07□□□□□ -1.92
VPS28-216ENST00000533806 LCE3DQ9BYE3 92 aa3.05□□□□□ -1.92
VPS28-216ENST00000533806 LCE3EQ5T5B0 92 aa2.88□□□□□ -1.95
VPS28-216ENST00000533806 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.82□□□□□ -1.96
VPS28-216ENST00000533806 KRTAP5-11Q6L8G4 156 aa2.76□□□□□ -1.97
VPS28-216ENST00000533806 KRTAP4-12Q9BQ66 201 aa2.72□□□□□ -1.97
VPS28-216ENST00000533806 INE1O15225 51 aa2.67□□□□□ -1.98
VPS28-216ENST00000533806 LCE1FQ5T754 118 aa2.65□□□□□ -1.99
VPS28-216ENST00000533806 KRTAP21-2Q3LI59 83 aa2.6□□□□□ -1.99
VPS28-216ENST00000533806 PHGR1C9JFL3 82 aa2.39□□□□□ -2.03
VPS28-216ENST00000533806 KRTAP4-4Q9BYR3 166 aa2.32□□□□□ -2.04
VPS28-216ENST00000533806 PRM1P04553 51 aa2.22□□□□□ -2.05
VPS28-216ENST00000533806 MUC19Q7Z5P9 8384 aa2.2□□□□□ -2.06
VPS28-216ENST00000533806 KRTAP21-1Q3LI58 79 aa1.72□□□□□ -2.13
VPS28-216ENST00000533806 MUC16Q8WXI7 14507 aa1.55□□□□□ -2.16
Retrieved 78 of 20,778 RNA–protein pairs in 11.4 ms