RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 LCE1DQ5T752 114 aa5.41□□□□□ -1.54
CPSF1-211ENST00000533492 LCE4AQ5TA78 99 aa5.4□□□□□ -1.54
CPSF1-211ENST00000533492 LINC01558Q9Y6Z2 57 aa5.4□□□□□ -1.54
CPSF1-211ENST00000533492 MT4P47944 62 aa5.36□□□□□ -1.55
CPSF1-211ENST00000533492 KRTAP4-3Q9BYR4 195 aa5.35□□□□□ -1.55
CPSF1-211ENST00000533492 UQCR11O14957 56 aa5.31□□□□□ -1.56
CPSF1-211ENST00000533492 V9GYY9 64 aa5.29□□□□□ -1.56
CPSF1-211ENST00000533492 KRTAP12-3P60328 96 aa5.28□□□□□ -1.56
CPSF1-211ENST00000533492 KRTAP5-4Q6L8H1 288 aa5.25□□□□□ -1.57
CPSF1-211ENST00000533492 HMCN1Q96RW7 5635 aa5.25□□□□□ -1.57
CPSF1-211ENST00000533492 RPS28P62857 69 aaKnown RBP5.22□□□□□ -1.57
CPSF1-211ENST00000533492 KRTAP4-7Q9BYR0 210 aa5.21□□□□□ -1.58
CPSF1-211ENST00000533492 Q1T7F1 81 aa5.19□□□□□ -1.58
CPSF1-211ENST00000533492 MIR22HGQ0VDD5 57 aa5.18□□□□□ -1.58
CPSF1-211ENST00000533492 KRTAP4-6Q9BYQ5 205 aa5.18□□□□□ -1.58
CPSF1-211ENST00000533492 KRTAP25-1Q3LHN0 102 aa5.15□□□□□ -1.59
CPSF1-211ENST00000533492 K7ERS5 55 aa5.14□□□□□ -1.59
CPSF1-211ENST00000533492 PSPHP1O15172 72 aa5.07□□□□□ -1.6
CPSF1-211ENST00000533492 AHNAK2Q8IVF2 5795 aa5.05□□□□□ -1.6
CPSF1-211ENST00000533492 KRTAP5-10Q6L8G5 202 aa5.04□□□□□ -1.6
CPSF1-211ENST00000533492 KRTAP5-5Q701N2 237 aaPredicted RBP5□□□□□ -1.61
CPSF1-211ENST00000533492 KRTAP19-4Q3LI73 84 aa4.99□□□□□ -1.61
CPSF1-211ENST00000533492 KRTAP20-2Q3LI61 65 aa4.98□□□□□ -1.61
CPSF1-211ENST00000533492 A6NED7 52 aa4.97□□□□□ -1.61
CPSF1-211ENST00000533492 KRTAP12-4P60329 112 aa4.97□□□□□ -1.61
CPSF1-211ENST00000533492 SPRR5A0A1B0GTR4 108 aa4.95□□□□□ -1.62
CPSF1-211ENST00000533492 LOC100996750A0A140TA64 210 aa4.94□□□□□ -1.62
CPSF1-211ENST00000533492 KRTAP23-1A1A580 65 aa4.94□□□□□ -1.62
CPSF1-211ENST00000533492 KRTAP5-3Q6L8H2 238 aa4.93□□□□□ -1.62
CPSF1-211ENST00000533492 KRTAP15-1Q3LI76 137 aa4.92□□□□□ -1.62
CPSF1-211ENST00000533492 KRTAP5-7Q6L8G8 165 aa4.86□□□□□ -1.63
CPSF1-211ENST00000533492 LCE3CQ5T5A8 94 aa4.85□□□□□ -1.63
CPSF1-211ENST00000533492 SYNE1Q8NF91 8797 aaKnown RBP4.82□□□□□ -1.64
CPSF1-211ENST00000533492 CDC42SE1Q9NRR8 79 aa4.82□□□□□ -1.64
CPSF1-211ENST00000533492 SVIPQ8NHG7 77 aa4.78□□□□□ -1.64
CPSF1-211ENST00000533492 ROMO1P60602 79 aa4.73□□□□□ -1.65
CPSF1-211ENST00000533492 MT1AP04731 61 aa4.67□□□□□ -1.66
CPSF1-211ENST00000533492 KRTAP6-1Q3LI64 71 aa4.64□□□□□ -1.67
CPSF1-211ENST00000533492 KRTAP5-2Q701N4 177 aa4.58□□□□□ -1.68
CPSF1-211ENST00000533492 KRTAP4-11Q9BYQ6 195 aa4.58□□□□□ -1.68
CPSF1-211ENST00000533492 BRK1Q8WUW1 75 aa4.57□□□□□ -1.68
CPSF1-211ENST00000533492 KRTAP9-6A8MVA2 160 aa4.54□□□□□ -1.68
CPSF1-211ENST00000533492 KRTAP9-4Q9BYQ2 154 aa4.53□□□□□ -1.68
CPSF1-211ENST00000533492 KRTAP6-2Q3LI66 62 aa4.46□□□□□ -1.7
CPSF1-211ENST00000533492 PRO0628Q9UI54 55 aa4.45□□□□□ -1.7
CPSF1-211ENST00000533492 KRTAP5-8O75690 187 aa4.4□□□□□ -1.71
CPSF1-211ENST00000533492 PMAIP1Q13794 54 aa4.35□□□□□ -1.71
CPSF1-211ENST00000533492 OBSCNQ5VST9 7968 aa4.34□□□□□ -1.72
CPSF1-211ENST00000533492 MT3P25713 68 aa4.3□□□□□ -1.72
CPSF1-211ENST00000533492 KRTAP9-9Q9BYP9 154 aa4.23□□□□□ -1.73
CPSF1-211ENST00000533492 AHNAKQ09666 5890 aaKnown RBP4.19□□□□□ -1.74
CPSF1-211ENST00000533492 MUC5BQ9HC84 5762 aaPredicted RBP4.18□□□□□ -1.74
CPSF1-211ENST00000533492 MUC5ACP98088 5654 aa4.17□□□□□ -1.74
CPSF1-211ENST00000533492 KRTAP5-1Q6L8H4 278 aa4.13□□□□□ -1.75
CPSF1-211ENST00000533492 KTN1-AS1Q86SY8 53 aa4.07□□□□□ -1.76
CPSF1-211ENST00000533492 PRAC1Q96KF2 57 aa4.01□□□□□ -1.77
CPSF1-211ENST00000533492 LCE1EQ5T753 118 aa3.94□□□□□ -1.78
CPSF1-211ENST00000533492 LCE1BQ5T7P3 118 aa3.76□□□□□ -1.81
CPSF1-211ENST00000533492 KRTAP4-2Q9BYR5 136 aa3.71□□□□□ -1.82
CPSF1-211ENST00000533492 LCE1CQ5T751 118 aa3.66□□□□□ -1.82
CPSF1-211ENST00000533492 LUZP6Q538Z0 58 aa3.51□□□□□ -1.85
CPSF1-211ENST00000533492 LCE3DQ9BYE3 92 aa3.5□□□□□ -1.85
CPSF1-211ENST00000533492 KRTAP4-12Q9BQ66 201 aa3.43□□□□□ -1.86
CPSF1-211ENST00000533492 KRTAP5-11Q6L8G4 156 aa3.31□□□□□ -1.88
CPSF1-211ENST00000533492 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.3□□□□□ -1.88
CPSF1-211ENST00000533492 LCE3EQ5T5B0 92 aa3.28□□□□□ -1.88
CPSF1-211ENST00000533492 H3BS24 57 aa3.27□□□□□ -1.89
CPSF1-211ENST00000533492 LCE1FQ5T754 118 aa3.26□□□□□ -1.89
CPSF1-211ENST00000533492 NDUFAF8A1L188 74 aa3.18□□□□□ -1.9
CPSF1-211ENST00000533492 KRTAP21-2Q3LI59 83 aa3.05□□□□□ -1.92
CPSF1-211ENST00000533492 PHGR1C9JFL3 82 aa2.97□□□□□ -1.93
CPSF1-211ENST00000533492 A0A0A0MQY5 61 aa2.94□□□□□ -1.94
CPSF1-211ENST00000533492 KRTAP4-4Q9BYR3 166 aa2.83□□□□□ -1.96
CPSF1-211ENST00000533492 INE1O15225 51 aa2.73□□□□□ -1.97
CPSF1-211ENST00000533492 MUC19Q7Z5P9 8384 aa2.67□□□□□ -1.98
CPSF1-211ENST00000533492 PRM1P04553 51 aa2.41□□□□□ -2.02
CPSF1-211ENST00000533492 KRTAP21-1Q3LI58 79 aa2.25□□□□□ -2.05
CPSF1-211ENST00000533492 MUC16Q8WXI7 14507 aa1.88□□□□□ -2.11
Retrieved 78 of 20,778 RNA–protein pairs in 77.5 ms