RNA–Protein interactions for RNA: ENST00000531042.5

CPSF1-205, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-205ENST00000531042 K7ERS5 55 aa5.83□□□□□ -1.48
CPSF1-205ENST00000531042 A0A0D9SG42 100 aa5.82□□□□□ -1.48
CPSF1-205ENST00000531042 KRTAP4-9Q9BYQ8 210 aa5.8□□□□□ -1.48
CPSF1-205ENST00000531042 KTN1-AS1Q86SY8 53 aa5.78□□□□□ -1.48
CPSF1-205ENST00000531042 GPR98Q8WXG9 6306 aa5.78□□□□□ -1.48
CPSF1-205ENST00000531042 SPINT4Q6UDR6 99 aa5.76□□□□□ -1.49
CPSF1-205ENST00000531042 KRTAP19-5Q3LI72 72 aa5.74□□□□□ -1.49
CPSF1-205ENST00000531042 MT1GP13640 62 aa5.73□□□□□ -1.49
CPSF1-205ENST00000531042 KRTAP12-1P59990 96 aa5.72□□□□□ -1.49
CPSF1-205ENST00000531042 PP632Q6XCG6 107 aa5.67□□□□□ -1.5
CPSF1-205ENST00000531042 LCE1DQ5T752 114 aa5.65□□□□□ -1.5
CPSF1-205ENST00000531042 MT1MQ8N339 61 aa5.63□□□□□ -1.51
CPSF1-205ENST00000531042 MT1LQ93083 61 aa5.6□□□□□ -1.51
CPSF1-205ENST00000531042 LCE4AQ5TA78 99 aa5.59□□□□□ -1.51
CPSF1-205ENST00000531042 ROMO1P60602 79 aa5.58□□□□□ -1.52
CPSF1-205ENST00000531042 HMCN1Q96RW7 5635 aa5.57□□□□□ -1.52
CPSF1-205ENST00000531042 MT4P47944 62 aa5.55□□□□□ -1.52
CPSF1-205ENST00000531042 LCE3AQ5TA76 89 aa5.52□□□□□ -1.53
CPSF1-205ENST00000531042 C10orf95Q9H7T3 257 aa5.52□□□□□ -1.53
CPSF1-205ENST00000531042 PRAC1Q96KF2 57 aa5.51□□□□□ -1.53
CPSF1-205ENST00000531042 KRTAP4-3Q9BYR4 195 aa5.5□□□□□ -1.53
CPSF1-205ENST00000531042 TNP1P09430 55 aa5.49□□□□□ -1.53
CPSF1-205ENST00000531042 KRTAP5-4Q6L8H1 288 aa5.47□□□□□ -1.53
CPSF1-205ENST00000531042 AHNAK2Q8IVF2 5795 aa5.41□□□□□ -1.54
CPSF1-205ENST00000531042 KRTAP25-1Q3LHN0 102 aa5.41□□□□□ -1.54
CPSF1-205ENST00000531042 KRTAP4-6Q9BYQ5 205 aa5.39□□□□□ -1.55
CPSF1-205ENST00000531042 KRTAP5-10Q6L8G5 202 aa5.33□□□□□ -1.56
CPSF1-205ENST00000531042 KRTAP4-7Q9BYR0 210 aa5.33□□□□□ -1.56
CPSF1-205ENST00000531042 KRTAP12-3P60328 96 aa5.31□□□□□ -1.56
CPSF1-205ENST00000531042 KRTAP5-5Q701N2 237 aaPredicted RBP5.18□□□□□ -1.58
CPSF1-205ENST00000531042 KRTAP20-2Q3LI61 65 aa5.17□□□□□ -1.58
CPSF1-205ENST00000531042 KRTAP5-3Q6L8H2 238 aa5.17□□□□□ -1.58
CPSF1-205ENST00000531042 KRTAP23-1A1A580 65 aa5.15□□□□□ -1.59
CPSF1-205ENST00000531042 KRTAP5-7Q6L8G8 165 aa5.15□□□□□ -1.59
CPSF1-205ENST00000531042 SPRR5A0A1B0GTR4 108 aa5.12□□□□□ -1.59
CPSF1-205ENST00000531042 KRTAP12-4P60329 112 aa5.08□□□□□ -1.6
CPSF1-205ENST00000531042 LOC100996750A0A140TA64 210 aa5.05□□□□□ -1.6
CPSF1-205ENST00000531042 SYNE1Q8NF91 8797 aaKnown RBP5.04□□□□□ -1.6
CPSF1-205ENST00000531042 KRTAP19-4Q3LI73 84 aa5.01□□□□□ -1.61
CPSF1-205ENST00000531042 KRTAP15-1Q3LI76 137 aa4.91□□□□□ -1.62
CPSF1-205ENST00000531042 LCE3CQ5T5A8 94 aa4.88□□□□□ -1.63
CPSF1-205ENST00000531042 MT1AP04731 61 aa4.76□□□□□ -1.65
CPSF1-205ENST00000531042 KRTAP5-2Q701N4 177 aa4.76□□□□□ -1.65
CPSF1-205ENST00000531042 KRTAP4-11Q9BYQ6 195 aa4.76□□□□□ -1.65
CPSF1-205ENST00000531042 KRTAP6-1Q3LI64 71 aa4.75□□□□□ -1.65
CPSF1-205ENST00000531042 KRTAP9-4Q9BYQ2 154 aa4.63□□□□□ -1.67
CPSF1-205ENST00000531042 KRTAP9-6A8MVA2 160 aa4.62□□□□□ -1.67
CPSF1-205ENST00000531042 KRTAP5-8O75690 187 aa4.61□□□□□ -1.67
CPSF1-205ENST00000531042 KRTAP6-2Q3LI66 62 aa4.57□□□□□ -1.68
CPSF1-205ENST00000531042 LUZP6Q538Z0 58 aa4.53□□□□□ -1.68
CPSF1-205ENST00000531042 OBSCNQ5VST9 7968 aa4.51□□□□□ -1.69
CPSF1-205ENST00000531042 MUC5BQ9HC84 5762 aaPredicted RBP4.49□□□□□ -1.69
CPSF1-205ENST00000531042 MUC5ACP98088 5654 aa4.48□□□□□ -1.69
CPSF1-205ENST00000531042 AHNAKQ09666 5890 aaKnown RBP4.48□□□□□ -1.69
CPSF1-205ENST00000531042 NDUFAF8A1L188 74 aa4.47□□□□□ -1.69
CPSF1-205ENST00000531042 KRTAP9-9Q9BYP9 154 aa4.39□□□□□ -1.71
CPSF1-205ENST00000531042 MT3P25713 68 aa4.37□□□□□ -1.71
CPSF1-205ENST00000531042 KRTAP5-1Q6L8H4 278 aa4.3□□□□□ -1.72
CPSF1-205ENST00000531042 H3BS24 57 aa4.15□□□□□ -1.75
CPSF1-205ENST00000531042 LCE1EQ5T753 118 aa4.06□□□□□ -1.76
CPSF1-205ENST00000531042 A0A0A0MQY5 61 aa4.02□□□□□ -1.77
CPSF1-205ENST00000531042 KRTAP4-2Q9BYR5 136 aa3.85□□□□□ -1.79
CPSF1-205ENST00000531042 LCE1BQ5T7P3 118 aa3.82□□□□□ -1.8
CPSF1-205ENST00000531042 INE1O15225 51 aa3.78□□□□□ -1.8
CPSF1-205ENST00000531042 LCE1CQ5T751 118 aa3.77□□□□□ -1.81
CPSF1-205ENST00000531042 KRTAP4-12Q9BQ66 201 aa3.54□□□□□ -1.84
CPSF1-205ENST00000531042 LCE3DQ9BYE3 92 aa3.48□□□□□ -1.85
CPSF1-205ENST00000531042 KRTAP5-11Q6L8G4 156 aa3.42□□□□□ -1.86
CPSF1-205ENST00000531042 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.41□□□□□ -1.86
CPSF1-205ENST00000531042 LCE1FQ5T754 118 aa3.37□□□□□ -1.87
CPSF1-205ENST00000531042 LCE3EQ5T5B0 92 aa3.28□□□□□ -1.88
CPSF1-205ENST00000531042 KRTAP21-2Q3LI59 83 aa3.14□□□□□ -1.91
CPSF1-205ENST00000531042 PHGR1C9JFL3 82 aa3.1□□□□□ -1.91
CPSF1-205ENST00000531042 PRM1P04553 51 aa2.9□□□□□ -1.95
CPSF1-205ENST00000531042 KRTAP4-4Q9BYR3 166 aa2.89□□□□□ -1.95
CPSF1-205ENST00000531042 MUC19Q7Z5P9 8384 aa2.78□□□□□ -1.96
CPSF1-205ENST00000531042 KRTAP21-1Q3LI58 79 aa2.36□□□□□ -2.03
CPSF1-205ENST00000531042 MUC16Q8WXI7 14507 aa2.01□□□□□ -2.09
Retrieved 78 of 20,778 RNA–protein pairs in 56.6 ms