RNA–Protein interactions for RNA: ENST00000523541.1

CCNC-213, Transcript of cyclin C, humanhuman

TSL 1 (best)

Gene CCNC, Length 1,123 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNC-213ENST00000523541 TMEM258P61165 79 aa6.32□□□□□ -1.4
CCNC-213ENST00000523541 TNP1P09430 55 aa6.3□□□□□ -1.4
CCNC-213ENST00000523541 KRTAP19-5Q3LI72 72 aa6.29□□□□□ -1.4
CCNC-213ENST00000523541 MT1GP13640 62 aa6.28□□□□□ -1.4
CCNC-213ENST00000523541 DSTQ03001 7570 aaKnown RBP6.26□□□□□ -1.41
CCNC-213ENST00000523541 PP632Q6XCG6 107 aa6.24□□□□□ -1.41
CCNC-213ENST00000523541 C10orf95Q9H7T3 257 aa6.24□□□□□ -1.41
CCNC-213ENST00000523541 UQCR11O14957 56 aa6.23□□□□□ -1.41
CCNC-213ENST00000523541 LCE3AQ5TA76 89 aa6.16□□□□□ -1.42
CCNC-213ENST00000523541 MT1LQ93083 61 aa6.13□□□□□ -1.43
CCNC-213ENST00000523541 PCP4P48539 62 aa6.12□□□□□ -1.43
CCNC-213ENST00000523541 MT1MQ8N339 61 aa6.1□□□□□ -1.43
CCNC-213ENST00000523541 KRTAP19-4Q3LI73 84 aa6.07□□□□□ -1.44
CCNC-213ENST00000523541 MIR22HGQ0VDD5 57 aa6.05□□□□□ -1.44
CCNC-213ENST00000523541 V9GYY9 64 aa6.05□□□□□ -1.44
CCNC-213ENST00000523541 K7ERS5 55 aa6□□□□□ -1.45
CCNC-213ENST00000523541 GPR98Q8WXG9 6306 aa6□□□□□ -1.45
CCNC-213ENST00000523541 KRTAP12-3P60328 96 aa5.98□□□□□ -1.45
CCNC-213ENST00000523541 KRTAP25-1Q3LHN0 102 aa5.97□□□□□ -1.45
CCNC-213ENST00000523541 MT4P47944 62 aa5.96□□□□□ -1.46
CCNC-213ENST00000523541 Q1T7F1 81 aa5.96□□□□□ -1.46
CCNC-213ENST00000523541 KRTAP4-3Q9BYR4 195 aa5.95□□□□□ -1.46
CCNC-213ENST00000523541 PSPHP1O15172 72 aa5.88□□□□□ -1.47
CCNC-213ENST00000523541 RPS28P62857 69 aaKnown RBP5.86□□□□□ -1.47
CCNC-213ENST00000523541 HMCN1Q96RW7 5635 aa5.86□□□□□ -1.47
CCNC-213ENST00000523541 KRTAP5-4Q6L8H1 288 aa5.84□□□□□ -1.47
CCNC-213ENST00000523541 KRTAP23-1A1A580 65 aa5.82□□□□□ -1.48
CCNC-213ENST00000523541 A6NED7 52 aa5.73□□□□□ -1.49
CCNC-213ENST00000523541 AHNAK2Q8IVF2 5795 aa5.68□□□□□ -1.5
CCNC-213ENST00000523541 CDC42SE1Q9NRR8 79 aa5.64□□□□□ -1.51
CCNC-213ENST00000523541 KRTAP15-1Q3LI76 137 aa5.61□□□□□ -1.51
CCNC-213ENST00000523541 KRTAP5-5Q701N2 237 aaPredicted RBP5.61□□□□□ -1.51
CCNC-213ENST00000523541 ROMO1P60602 79 aa5.54□□□□□ -1.52
CCNC-213ENST00000523541 SPRR5A0A1B0GTR4 108 aa5.53□□□□□ -1.52
CCNC-213ENST00000523541 KRTAP5-10Q6L8G5 202 aa5.53□□□□□ -1.52
CCNC-213ENST00000523541 KRTAP12-4P60329 112 aa5.51□□□□□ -1.53
CCNC-213ENST00000523541 LCE3CQ5T5A8 94 aa5.51□□□□□ -1.53
CCNC-213ENST00000523541 KRTAP20-2Q3LI61 65 aa5.5□□□□□ -1.53
CCNC-213ENST00000523541 SYNE1Q8NF91 8797 aaKnown RBP5.38□□□□□ -1.55
CCNC-213ENST00000523541 KRTAP5-7Q6L8G8 165 aa5.32□□□□□ -1.56
CCNC-213ENST00000523541 MT1AP04731 61 aa5.24□□□□□ -1.57
CCNC-213ENST00000523541 BRK1Q8WUW1 75 aa5.21□□□□□ -1.58
CCNC-213ENST00000523541 H3BS24 57 aa5.17□□□□□ -1.58
CCNC-213ENST00000523541 KRTAP6-1Q3LI64 71 aa5.16□□□□□ -1.58
CCNC-213ENST00000523541 KRTAP9-6A8MVA2 160 aa5.12□□□□□ -1.59
CCNC-213ENST00000523541 KRTAP5-2Q701N4 177 aa5.12□□□□□ -1.59
CCNC-213ENST00000523541 KRTAP6-2Q3LI66 62 aa4.95□□□□□ -1.62
CCNC-213ENST00000523541 PMAIP1Q13794 54 aa4.9□□□□□ -1.63
CCNC-213ENST00000523541 KRTAP5-8O75690 187 aa4.84□□□□□ -1.63
CCNC-213ENST00000523541 MT3P25713 68 aa4.83□□□□□ -1.64
CCNC-213ENST00000523541 PRO0628Q9UI54 55 aa4.81□□□□□ -1.64
CCNC-213ENST00000523541 OBSCNQ5VST9 7968 aa4.79□□□□□ -1.64
CCNC-213ENST00000523541 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.77□□□□□ -1.65
CCNC-213ENST00000523541 AHNAKQ09666 5890 aaKnown RBP4.69□□□□□ -1.66
CCNC-213ENST00000523541 MUC5ACP98088 5654 aa4.67□□□□□ -1.66
CCNC-213ENST00000523541 PRAC1Q96KF2 57 aa4.66□□□□□ -1.66
CCNC-213ENST00000523541 MUC5BQ9HC84 5762 aaPredicted RBP4.65□□□□□ -1.66
CCNC-213ENST00000523541 KRTAP5-1Q6L8H4 278 aa4.57□□□□□ -1.68
CCNC-213ENST00000523541 KRTAP5-11Q6L8G4 156 aa4.55□□□□□ -1.68
CCNC-213ENST00000523541 KTN1-AS1Q86SY8 53 aa4.54□□□□□ -1.68
CCNC-213ENST00000523541 LCE1EQ5T753 118 aa4.47□□□□□ -1.69
CCNC-213ENST00000523541 SVIPQ8NHG7 77 aa4.31□□□□□ -1.72
CCNC-213ENST00000523541 LCE1BQ5T7P3 118 aa4.2□□□□□ -1.74
CCNC-213ENST00000523541 LCE1CQ5T751 118 aa4.13□□□□□ -1.75
CCNC-213ENST00000523541 LCE3DQ9BYE3 92 aa4□□□□□ -1.77
CCNC-213ENST00000523541 KRTAP4-4Q9BYR3 166 aa3.99□□□□□ -1.77
CCNC-213ENST00000523541 LUZP6Q538Z0 58 aa3.86□□□□□ -1.79
CCNC-213ENST00000523541 LCE3EQ5T5B0 92 aa3.76□□□□□ -1.81
CCNC-213ENST00000523541 LCE1FQ5T754 118 aa3.68□□□□□ -1.82
CCNC-213ENST00000523541 KRTAP21-2Q3LI59 83 aa3.43□□□□□ -1.86
CCNC-213ENST00000523541 NDUFAF8A1L188 74 aa3.42□□□□□ -1.86
CCNC-213ENST00000523541 PHGR1C9JFL3 82 aa3.29□□□□□ -1.88
CCNC-213ENST00000523541 A0A0A0MQY5 61 aa3.27□□□□□ -1.89
CCNC-213ENST00000523541 MUC19Q7Z5P9 8384 aa2.97□□□□□ -1.93
CCNC-213ENST00000523541 INE1O15225 51 aa2.79□□□□□ -1.96
CCNC-213ENST00000523541 PRM1P04553 51 aa2.78□□□□□ -1.96
CCNC-213ENST00000523541 KRTAP21-1Q3LI58 79 aa2.48□□□□□ -2.01
CCNC-213ENST00000523541 MUC16Q8WXI7 14507 aa2.1□□□□□ -2.07
Retrieved 78 of 20,778 RNA–protein pairs in 77.7 ms