RNA–Protein interactions for RNA: ENST00000521260.1

NPM1-207, Transcript of nucleophosmin 1, humanhuman

TSL 2

Gene NPM1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPM1-207ENST00000521260 VPS13BQ7Z7G8 4022 aa1.81□□□□□ -2.12
NPM1-207ENST00000521260 FLGP20930 4061 aaPredicted RBP1.8□□□□□ -2.12
NPM1-207ENST00000521260 LRP1Q07954 4544 aaKnown RBP1.79□□□□□ -2.12
NPM1-207ENST00000521260 MT1HL1P0DM35 61 aa1.78□□□□□ -2.12
NPM1-207ENST00000521260 KRTAP12-4P60329 112 aa1.77□□□□□ -2.13
NPM1-207ENST00000521260 TNXBP22105 4242 aa1.76□□□□□ -2.13
NPM1-207ENST00000521260 HMCN2Q8NDA2 5059 aa1.75□□□□□ -2.13
NPM1-207ENST00000521260 FAT3Q8TDW7 4589 aa1.75□□□□□ -2.13
NPM1-207ENST00000521260 KRTAP5-2Q701N4 177 aa1.74□□□□□ -2.13
NPM1-207ENST00000521260 UBR4Q5T4S7 5183 aa1.72□□□□□ -2.13
NPM1-207ENST00000521260 KRTAP19-2Q3LHN2 52 aa1.72□□□□□ -2.13
NPM1-207ENST00000521260 KRTAP19-8Q3LI54 63 aa1.72□□□□□ -2.13
NPM1-207ENST00000521260 LRP2P98164 4655 aa1.69□□□□□ -2.14
NPM1-207ENST00000521260 KRTAP6-3Q3LI67 103 aa1.69□□□□□ -2.14
NPM1-207ENST00000521260 KRTAP19-5Q3LI72 72 aa1.69□□□□□ -2.14
NPM1-207ENST00000521260 LCE3DQ9BYE3 92 aa1.67□□□□□ -2.14
NPM1-207ENST00000521260 MT1XP80297 61 aa1.66□□□□□ -2.14
NPM1-207ENST00000521260 OBSCNQ5VST9 7968 aa1.65□□□□□ -2.15
NPM1-207ENST00000521260 KRTAP4-1Q9BYQ7 146 aa1.64□□□□□ -2.15
NPM1-207ENST00000521260 LPAP08519 4548 aa1.63□□□□□ -2.15
NPM1-207ENST00000521260 KRTAP4-3Q9BYR4 195 aa1.63□□□□□ -2.15
NPM1-207ENST00000521260 MT1AP04731 61 aa1.62□□□□□ -2.15
NPM1-207ENST00000521260 RNF213Q63HN8 5207 aa1.61□□□□□ -2.15
NPM1-207ENST00000521260 MT1EP04732 61 aa1.61□□□□□ -2.15
NPM1-207ENST00000521260 MUC17Q685J3 4493 aa1.61□□□□□ -2.15
NPM1-207ENST00000521260 MUC2Q02817 5179 aa1.59□□□□□ -2.15
NPM1-207ENST00000521260 PRM1P04553 51 aa1.58□□□□□ -2.16
NPM1-207ENST00000521260 MT1LQ93083 61 aa1.58□□□□□ -2.16
NPM1-207ENST00000521260 MT1BP07438 61 aa1.56□□□□□ -2.16
NPM1-207ENST00000521260 FAT4Q6V0I7 4981 aa1.56□□□□□ -2.16
NPM1-207ENST00000521260 CRCT1Q9UGL9 99 aa1.55□□□□□ -2.16
NPM1-207ENST00000521260 MT2AP02795 61 aa1.52□□□□□ -2.17
NPM1-207ENST00000521260 MT1HP80294 61 aa1.52□□□□□ -2.17
NPM1-207ENST00000521260 MT1FP04733 61 aa1.5□□□□□ -2.17
NPM1-207ENST00000521260 KRTAP5-8O75690 187 aa1.48□□□□□ -2.17
NPM1-207ENST00000521260 KRTAP5-5Q701N2 237 aaPredicted RBP1.48□□□□□ -2.17
NPM1-207ENST00000521260 KRTAP19-7Q3SYF9 63 aa1.46□□□□□ -2.18
NPM1-207ENST00000521260 FSIP2Q5CZC0 6907 aa1.45□□□□□ -2.18
NPM1-207ENST00000521260 SPRR2AP35326 72 aa1.45□□□□□ -2.18
NPM1-207ENST00000521260 SPRR2FQ96RM1 72 aa1.45□□□□□ -2.18
NPM1-207ENST00000521260 SPRR2BP35325 72 aa1.42□□□□□ -2.18
NPM1-207ENST00000521260 HMCN1Q96RW7 5635 aa1.41□□□□□ -2.18
NPM1-207ENST00000521260 MACF1Q9UPN3 7388 aaKnown RBP1.41□□□□□ -2.18
NPM1-207ENST00000521260 MT1GP13640 62 aa1.39□□□□□ -2.19
NPM1-207ENST00000521260 KRTAP6-2Q3LI66 62 aa1.39□□□□□ -2.19
NPM1-207ENST00000521260 KRTAP19-6Q3LI70 58 aa1.38□□□□□ -2.19
NPM1-207ENST00000521260 SPRR2DP22532 72 aa1.37□□□□□ -2.19
NPM1-207ENST00000521260 SPRR2EP22531 72 aa1.35□□□□□ -2.19
NPM1-207ENST00000521260 USH2AO75445 5202 aa1.34□□□□□ -2.19
NPM1-207ENST00000521260 SSPOA2VEC9 5147 aa1.34□□□□□ -2.2
NPM1-207ENST00000521260 SYNE2Q8WXH0 6885 aaKnown RBP1.33□□□□□ -2.2
NPM1-207ENST00000521260 LCE1CQ5T751 118 aa1.32□□□□□ -2.2
NPM1-207ENST00000521260 LCE1BQ5T7P3 118 aa1.32□□□□□ -2.2
NPM1-207ENST00000521260 MT1MQ8N339 61 aa1.32□□□□□ -2.2
NPM1-207ENST00000521260 FCGBPQ9Y6R7 5405 aaPredicted RBP1.32□□□□□ -2.2
NPM1-207ENST00000521260 KRTAP19-3Q7Z4W3 81 aa1.31□□□□□ -2.2
NPM1-207ENST00000521260 KRTAP20-1Q3LI63 56 aa1.28□□□□□ -2.2
NPM1-207ENST00000521260 NEBP20929 6669 aa1.25□□□□□ -2.21
NPM1-207ENST00000521260 MUC12Q9UKN1 5478 aa1.22□□□□□ -2.21
NPM1-207ENST00000521260 SYNE1Q8NF91 8797 aaKnown RBP1.21□□□□□ -2.22
NPM1-207ENST00000521260 KRTAP6-1Q3LI64 71 aa1.21□□□□□ -2.22
NPM1-207ENST00000521260 KMT2DO14686 5537 aa1.15□□□□□ -2.22
NPM1-207ENST00000521260 KRTAP5-7Q6L8G8 165 aa1.14□□□□□ -2.23
NPM1-207ENST00000521260 MDN1Q9NU22 5596 aa1.13□□□□□ -2.23
NPM1-207ENST00000521260 KRTAP21-1Q3LI58 79 aa1.09□□□□□ -2.23
NPM1-207ENST00000521260 DSTQ03001 7570 aaKnown RBP1.07□□□□□ -2.24
NPM1-207ENST00000521260 MUC19Q7Z5P9 8384 aa1.04□□□□□ -2.24
NPM1-207ENST00000521260 KRTAP5-10Q6L8G5 202 aa1.01□□□□□ -2.25
NPM1-207ENST00000521260 GPR98Q8WXG9 6306 aa1□□□□□ -2.25
NPM1-207ENST00000521260 MT4P47944 62 aa0.98□□□□□ -2.25
NPM1-207ENST00000521260 KRTAP20-2Q3LI61 65 aa0.95□□□□□ -2.26
NPM1-207ENST00000521260 KRTAP21-2Q3LI59 83 aa0.92□□□□□ -2.26
NPM1-207ENST00000521260 AHNAK2Q8IVF2 5795 aa0.9□□□□□ -2.27
NPM1-207ENST00000521260 MUC5ACP98088 5654 aa0.8□□□□□ -2.28
NPM1-207ENST00000521260 MUC5BQ9HC84 5762 aaPredicted RBP0.76□□□□□ -2.29
NPM1-207ENST00000521260 AHNAKQ09666 5890 aaKnown RBP0.73□□□□□ -2.29
NPM1-207ENST00000521260 PHGR1C9JFL3 82 aa0.58□□□□□ -2.32
NPM1-207ENST00000521260 MUC16Q8WXI7 14507 aa0.57□□□□□ -2.32
Retrieved 78 of 20,778 RNA–protein pairs in 66.8 ms