RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 KRTAP2-4Q9BYR9 128 aa3.75□□□□□ -1.81
HDAC3-215ENST00000519474 KRTAP10-12P60413 245 aa3.73□□□□□ -1.81
HDAC3-215ENST00000519474 LCE1AQ5T7P2 110 aa3.73□□□□□ -1.81
HDAC3-215ENST00000519474 NEBP20929 6669 aa3.73□□□□□ -1.81
HDAC3-215ENST00000519474 KRTAP13-4Q3LI77 160 aa3.71□□□□□ -1.82
HDAC3-215ENST00000519474 MDN1Q9NU22 5596 aa3.7□□□□□ -1.82
HDAC3-215ENST00000519474 SPRR5A0A1B0GTR4 108 aa3.67□□□□□ -1.82
HDAC3-215ENST00000519474 KRTAP2-2Q9BYT5 123 aa3.63□□□□□ -1.83
HDAC3-215ENST00000519474 KRTAP2-1Q9BYU5 128 aa3.63□□□□□ -1.83
HDAC3-215ENST00000519474 SPRR2DP22532 72 aa3.61□□□□□ -1.83
HDAC3-215ENST00000519474 A0A0D9SG42 100 aa3.56□□□□□ -1.84
HDAC3-215ENST00000519474 LCE3BQ5TA77 95 aa3.53□□□□□ -1.84
HDAC3-215ENST00000519474 KRTAP12-1P59990 96 aa3.52□□□□□ -1.85
HDAC3-215ENST00000519474 KRTAP19-7Q3SYF9 63 aa3.52□□□□□ -1.85
HDAC3-215ENST00000519474 MT1EP04732 61 aa3.47□□□□□ -1.85
HDAC3-215ENST00000519474 LCE5AQ5TCM9 118 aa3.47□□□□□ -1.85
HDAC3-215ENST00000519474 KRTAP19-3Q7Z4W3 81 aa3.44□□□□□ -1.86
HDAC3-215ENST00000519474 KRTAP19-5Q3LI72 72 aa3.42□□□□□ -1.86
HDAC3-215ENST00000519474 MT1GP13640 62 aa3.38□□□□□ -1.87
HDAC3-215ENST00000519474 LCE3AQ5TA76 89 aa3.33□□□□□ -1.88
HDAC3-215ENST00000519474 MT1LQ93083 61 aa3.33□□□□□ -1.88
HDAC3-215ENST00000519474 TNP1P09430 55 aa3.32□□□□□ -1.88
HDAC3-215ENST00000519474 MT1MQ8N339 61 aa3.31□□□□□ -1.88
HDAC3-215ENST00000519474 KRTAP4-9Q9BYQ8 210 aa3.31□□□□□ -1.88
HDAC3-215ENST00000519474 DSTQ03001 7570 aaKnown RBP3.28□□□□□ -1.88
HDAC3-215ENST00000519474 KRTAP4-3Q9BYR4 195 aa3.26□□□□□ -1.89
HDAC3-215ENST00000519474 LCE1DQ5T752 114 aa3.22□□□□□ -1.89
HDAC3-215ENST00000519474 LCE4AQ5TA78 99 aa3.22□□□□□ -1.89
HDAC3-215ENST00000519474 KRTAP12-3P60328 96 aa3.19□□□□□ -1.9
HDAC3-215ENST00000519474 KRTAP4-7Q9BYR0 210 aa3.19□□□□□ -1.9
HDAC3-215ENST00000519474 KRTAP5-4Q6L8H1 288 aa3.18□□□□□ -1.9
HDAC3-215ENST00000519474 MT4P47944 62 aa3.17□□□□□ -1.9
HDAC3-215ENST00000519474 KRTAP19-4Q3LI73 84 aa3.13□□□□□ -1.91
HDAC3-215ENST00000519474 KRTAP4-6Q9BYQ5 205 aa3.13□□□□□ -1.91
HDAC3-215ENST00000519474 KRTAP5-5Q701N2 237 aaPredicted RBP3.05□□□□□ -1.92
HDAC3-215ENST00000519474 LOC100996750A0A140TA64 210 aa3.03□□□□□ -1.92
HDAC3-215ENST00000519474 HMCN1Q96RW7 5635 aa3.01□□□□□ -1.93
HDAC3-215ENST00000519474 KRTAP5-10Q6L8G5 202 aa3□□□□□ -1.93
HDAC3-215ENST00000519474 KRTAP20-2Q3LI61 65 aa2.98□□□□□ -1.93
HDAC3-215ENST00000519474 LCE3CQ5T5A8 94 aa2.96□□□□□ -1.94
HDAC3-215ENST00000519474 GPR98Q8WXG9 6306 aa2.95□□□□□ -1.94
HDAC3-215ENST00000519474 KRTAP12-4P60329 112 aa2.94□□□□□ -1.94
HDAC3-215ENST00000519474 KRTAP5-3Q6L8H2 238 aa2.94□□□□□ -1.94
HDAC3-215ENST00000519474 MT3P25713 68 aa2.89□□□□□ -1.95
HDAC3-215ENST00000519474 AHNAK2Q8IVF2 5795 aa2.89□□□□□ -1.95
HDAC3-215ENST00000519474 KRTAP5-7Q6L8G8 165 aa2.88□□□□□ -1.95
HDAC3-215ENST00000519474 SYNE1Q8NF91 8797 aaKnown RBP2.87□□□□□ -1.95
HDAC3-215ENST00000519474 KRTAP9-6A8MVA2 160 aa2.82□□□□□ -1.96
HDAC3-215ENST00000519474 MT1AP04731 61 aa2.82□□□□□ -1.96
HDAC3-215ENST00000519474 KRTAP6-1Q3LI64 71 aa2.82□□□□□ -1.96
HDAC3-215ENST00000519474 KRTAP4-12Q9BQ66 201 aa2.8□□□□□ -1.96
HDAC3-215ENST00000519474 KRTAP5-2Q701N4 177 aa2.77□□□□□ -1.97
HDAC3-215ENST00000519474 KRTAP9-9Q9BYP9 154 aa2.76□□□□□ -1.97
HDAC3-215ENST00000519474 KRTAP9-4Q9BYQ2 154 aa2.76□□□□□ -1.97
HDAC3-215ENST00000519474 KRTAP4-11Q9BYQ6 195 aa2.73□□□□□ -1.97
HDAC3-215ENST00000519474 LCE1FQ5T754 118 aa2.71□□□□□ -1.98
HDAC3-215ENST00000519474 KRTAP6-2Q3LI66 62 aa2.69□□□□□ -1.98
HDAC3-215ENST00000519474 KRTAP5-8O75690 187 aa2.65□□□□□ -1.99
HDAC3-215ENST00000519474 LCE1EQ5T753 118 aa2.62□□□□□ -1.99
HDAC3-215ENST00000519474 OBSCNQ5VST9 7968 aa2.51□□□□□ -2.01
HDAC3-215ENST00000519474 KRTAP5-1Q6L8H4 278 aa2.5□□□□□ -2.01
HDAC3-215ENST00000519474 MUC5ACP98088 5654 aa2.37□□□□□ -2.03
HDAC3-215ENST00000519474 KRTAP4-2Q9BYR5 136 aa2.37□□□□□ -2.03
HDAC3-215ENST00000519474 MUC5BQ9HC84 5762 aaPredicted RBP2.35□□□□□ -2.03
HDAC3-215ENST00000519474 AHNAKQ09666 5890 aaKnown RBP2.31□□□□□ -2.04
HDAC3-215ENST00000519474 LCE1BQ5T7P3 118 aa2.23□□□□□ -2.05
HDAC3-215ENST00000519474 PRM1P04553 51 aa2.22□□□□□ -2.05
HDAC3-215ENST00000519474 LCE3EQ5T5B0 92 aa2.22□□□□□ -2.05
HDAC3-215ENST00000519474 LCE1CQ5T751 118 aa2.21□□□□□ -2.06
HDAC3-215ENST00000519474 LCE3DQ9BYE3 92 aa2.15□□□□□ -2.07
HDAC3-215ENST00000519474 KRTAP5-6Q6L8G9 129 aaPredicted RBP2□□□□□ -2.09
HDAC3-215ENST00000519474 KRTAP5-11Q6L8G4 156 aa1.98□□□□□ -2.09
HDAC3-215ENST00000519474 KRTAP21-2Q3LI59 83 aa1.87□□□□□ -2.11
HDAC3-215ENST00000519474 PHGR1C9JFL3 82 aa1.73□□□□□ -2.13
HDAC3-215ENST00000519474 KRTAP4-4Q9BYR3 166 aa1.71□□□□□ -2.14
HDAC3-215ENST00000519474 KRTAP21-1Q3LI58 79 aa1.66□□□□□ -2.14
HDAC3-215ENST00000519474 MUC19Q7Z5P9 8384 aa1.53□□□□□ -2.16
HDAC3-215ENST00000519474 MUC16Q8WXI7 14507 aa1.2□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 75.2 ms