RNA–Protein interactions for RNA: ENST00000512683.1

VEGFA-216, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best)

Gene VEGFA, Length 475 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-216ENST00000512683 KRTAP4-9Q9BYQ8 210 aa4.68□□□□□ -1.66
VEGFA-216ENST00000512683 KTN1-AS1Q86SY8 53 aa4.67□□□□□ -1.66
VEGFA-216ENST00000512683 A0A1B0GU33 70 aa4.66□□□□□ -1.66
VEGFA-216ENST00000512683 A0A0D9SG42 100 aa4.65□□□□□ -1.67
VEGFA-216ENST00000512683 MT1GP13640 62 aa4.63□□□□□ -1.67
VEGFA-216ENST00000512683 K7ERS5 55 aa4.6□□□□□ -1.67
VEGFA-216ENST00000512683 KRTAP12-1P59990 96 aa4.6□□□□□ -1.67
VEGFA-216ENST00000512683 PP632Q6XCG6 107 aa4.6□□□□□ -1.67
VEGFA-216ENST00000512683 LCE4AQ5TA78 99 aa4.59□□□□□ -1.67
VEGFA-216ENST00000512683 SPINT4Q6UDR6 99 aa4.58□□□□□ -1.68
VEGFA-216ENST00000512683 LCE1DQ5T752 114 aa4.57□□□□□ -1.68
VEGFA-216ENST00000512683 HMCN1Q96RW7 5635 aa4.53□□□□□ -1.68
VEGFA-216ENST00000512683 KRTAP19-5Q3LI72 72 aa4.52□□□□□ -1.69
VEGFA-216ENST00000512683 MT1MQ8N339 61 aa4.47□□□□□ -1.69
VEGFA-216ENST00000512683 MT4P47944 62 aa4.46□□□□□ -1.7
VEGFA-216ENST00000512683 KRTAP5-4Q6L8H1 288 aa4.44□□□□□ -1.7
VEGFA-216ENST00000512683 MT1LQ93083 61 aa4.44□□□□□ -1.7
VEGFA-216ENST00000512683 C10orf95Q9H7T3 257 aa4.41□□□□□ -1.7
VEGFA-216ENST00000512683 AHNAK2Q8IVF2 5795 aa4.41□□□□□ -1.7
VEGFA-216ENST00000512683 LCE3AQ5TA76 89 aa4.39□□□□□ -1.71
VEGFA-216ENST00000512683 KRTAP5-10Q6L8G5 202 aa4.39□□□□□ -1.71
VEGFA-216ENST00000512683 TNP1P09430 55 aa4.35□□□□□ -1.71
VEGFA-216ENST00000512683 ROMO1P60602 79 aa4.35□□□□□ -1.71
VEGFA-216ENST00000512683 PRAC1Q96KF2 57 aa4.35□□□□□ -1.71
VEGFA-216ENST00000512683 KRTAP4-6Q9BYQ5 205 aa4.33□□□□□ -1.72
VEGFA-216ENST00000512683 KRTAP4-3Q9BYR4 195 aa4.32□□□□□ -1.72
VEGFA-216ENST00000512683 KRTAP25-1Q3LHN0 102 aa4.29□□□□□ -1.72
VEGFA-216ENST00000512683 KRTAP5-7Q6L8G8 165 aa4.28□□□□□ -1.72
VEGFA-216ENST00000512683 KRTAP5-3Q6L8H2 238 aa4.24□□□□□ -1.73
VEGFA-216ENST00000512683 SPRR5A0A1B0GTR4 108 aa4.21□□□□□ -1.74
VEGFA-216ENST00000512683 KRTAP12-3P60328 96 aa4.21□□□□□ -1.74
VEGFA-216ENST00000512683 KRTAP4-7Q9BYR0 210 aa4.21□□□□□ -1.74
VEGFA-216ENST00000512683 KRTAP20-2Q3LI61 65 aa4.18□□□□□ -1.74
VEGFA-216ENST00000512683 KRTAP12-4P60329 112 aa4.16□□□□□ -1.74
VEGFA-216ENST00000512683 KRTAP5-5Q701N2 237 aaPredicted RBP4.14□□□□□ -1.75
VEGFA-216ENST00000512683 KRTAP19-4Q3LI73 84 aa4.12□□□□□ -1.75
VEGFA-216ENST00000512683 SYNE1Q8NF91 8797 aaKnown RBP4.05□□□□□ -1.76
VEGFA-216ENST00000512683 LOC100996750A0A140TA64 210 aa3.98□□□□□ -1.77
VEGFA-216ENST00000512683 KRTAP23-1A1A580 65 aa3.95□□□□□ -1.78
VEGFA-216ENST00000512683 KRTAP15-1Q3LI76 137 aa3.91□□□□□ -1.78
VEGFA-216ENST00000512683 KRTAP4-11Q9BYQ6 195 aa3.9□□□□□ -1.79
VEGFA-216ENST00000512683 LCE3CQ5T5A8 94 aa3.88□□□□□ -1.79
VEGFA-216ENST00000512683 KRTAP5-2Q701N4 177 aa3.84□□□□□ -1.79
VEGFA-216ENST00000512683 MT1AP04731 61 aa3.79□□□□□ -1.8
VEGFA-216ENST00000512683 AHNAKQ09666 5890 aaKnown RBP3.75□□□□□ -1.81
VEGFA-216ENST00000512683 KRTAP5-8O75690 187 aa3.74□□□□□ -1.81
VEGFA-216ENST00000512683 KRTAP6-1Q3LI64 71 aa3.74□□□□□ -1.81
VEGFA-216ENST00000512683 MUC5BQ9HC84 5762 aaPredicted RBP3.73□□□□□ -1.81
VEGFA-216ENST00000512683 MUC5ACP98088 5654 aa3.73□□□□□ -1.81
VEGFA-216ENST00000512683 KRTAP9-6A8MVA2 160 aa3.71□□□□□ -1.82
VEGFA-216ENST00000512683 KRTAP9-4Q9BYQ2 154 aa3.71□□□□□ -1.82
VEGFA-216ENST00000512683 LUZP6Q538Z0 58 aa3.68□□□□□ -1.82
VEGFA-216ENST00000512683 OBSCNQ5VST9 7968 aa3.68□□□□□ -1.82
VEGFA-216ENST00000512683 NDUFAF8A1L188 74 aa3.64□□□□□ -1.83
VEGFA-216ENST00000512683 KRTAP6-2Q3LI66 62 aa3.63□□□□□ -1.83
VEGFA-216ENST00000512683 KRTAP9-9Q9BYP9 154 aa3.63□□□□□ -1.83
VEGFA-216ENST00000512683 H3BS24 57 aa3.62□□□□□ -1.83
VEGFA-216ENST00000512683 MT3P25713 68 aa3.53□□□□□ -1.84
VEGFA-216ENST00000512683 KRTAP5-1Q6L8H4 278 aa3.48□□□□□ -1.85
VEGFA-216ENST00000512683 A0A0A0MQY5 61 aa3.4□□□□□ -1.87
VEGFA-216ENST00000512683 LCE1EQ5T753 118 aa3.34□□□□□ -1.87
VEGFA-216ENST00000512683 INE1O15225 51 aa3.14□□□□□ -1.91
VEGFA-216ENST00000512683 KRTAP4-2Q9BYR5 136 aa3.08□□□□□ -1.92
VEGFA-216ENST00000512683 LCE1CQ5T751 118 aa3.07□□□□□ -1.92
VEGFA-216ENST00000512683 LCE1BQ5T7P3 118 aa3.07□□□□□ -1.92
VEGFA-216ENST00000512683 LCE1FQ5T754 118 aa2.82□□□□□ -1.96
VEGFA-216ENST00000512683 KRTAP4-12Q9BQ66 201 aa2.81□□□□□ -1.96
VEGFA-216ENST00000512683 KRTAP5-11Q6L8G4 156 aa2.78□□□□□ -1.96
VEGFA-216ENST00000512683 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.77□□□□□ -1.97
VEGFA-216ENST00000512683 LCE3DQ9BYE3 92 aa2.77□□□□□ -1.97
VEGFA-216ENST00000512683 LCE3EQ5T5B0 92 aa2.59□□□□□ -1.99
VEGFA-216ENST00000512683 PHGR1C9JFL3 82 aa2.56□□□□□ -2
VEGFA-216ENST00000512683 KRTAP21-2Q3LI59 83 aa2.49□□□□□ -2.01
VEGFA-216ENST00000512683 MUC19Q7Z5P9 8384 aa2.29□□□□□ -2.04
VEGFA-216ENST00000512683 KRTAP4-4Q9BYR3 166 aa2.26□□□□□ -2.05
VEGFA-216ENST00000512683 PRM1P04553 51 aa2.24□□□□□ -2.05
VEGFA-216ENST00000512683 KRTAP21-1Q3LI58 79 aa2□□□□□ -2.09
VEGFA-216ENST00000512683 MUC16Q8WXI7 14507 aa1.64□□□□□ -2.15
Retrieved 78 of 20,778 RNA–protein pairs in 298 ms