RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 GPR98Q8WXG9 6306 aa1.4□□□□□ -2.19
USP53-205ENST00000509769 MUC2Q02817 5179 aa1.39□□□□□ -2.19
USP53-205ENST00000509769 SVEP1Q4LDE5 3571 aa1.39□□□□□ -2.19
USP53-205ENST00000509769 LCE3CQ5T5A8 94 aa1.38□□□□□ -2.19
USP53-205ENST00000509769 LCE1DQ5T752 114 aa1.37□□□□□ -2.19
USP53-205ENST00000509769 LRP2P98164 4655 aa1.35□□□□□ -2.19
USP53-205ENST00000509769 SPRR2EP22531 72 aa1.34□□□□□ -2.19
USP53-205ENST00000509769 SPRR2BP35325 72 aa1.34□□□□□ -2.19
USP53-205ENST00000509769 SPRR2AP35326 72 aa1.34□□□□□ -2.19
USP53-205ENST00000509769 SPRR2GQ9BYE4 73 aa1.33□□□□□ -2.2
USP53-205ENST00000509769 KRTAP9-3Q9BYQ3 159 aa1.33□□□□□ -2.2
USP53-205ENST00000509769 SPRR2DP22532 72 aa1.32□□□□□ -2.2
USP53-205ENST00000509769 CSMD3Q7Z407 3707 aa1.32□□□□□ -2.2
USP53-205ENST00000509769 SYNE2Q8WXH0 6885 aaKnown RBP1.31□□□□□ -2.2
USP53-205ENST00000509769 KRTAP12-4P60329 112 aa1.3□□□□□ -2.2
USP53-205ENST00000509769 KRTAP10-7P60409 375 aaPredicted RBP1.29□□□□□ -2.2
USP53-205ENST00000509769 USH2AO75445 5202 aa1.29□□□□□ -2.2
USP53-205ENST00000509769 LCE3EQ5T5B0 92 aa1.29□□□□□ -2.2
USP53-205ENST00000509769 HMCN1Q96RW7 5635 aa1.28□□□□□ -2.2
USP53-205ENST00000509769 LCE1AQ5T7P2 110 aa1.28□□□□□ -2.2
USP53-205ENST00000509769 MT2AP02795 61 aa1.27□□□□□ -2.21
USP53-205ENST00000509769 KRTAP4-1Q9BYQ7 146 aa1.27□□□□□ -2.21
USP53-205ENST00000509769 LCE3BQ5TA77 95 aa1.27□□□□□ -2.21
USP53-205ENST00000509769 LCE3DQ9BYE3 92 aa1.26□□□□□ -2.21
USP53-205ENST00000509769 KRTAP19-2Q3LHN2 52 aa1.25□□□□□ -2.21
USP53-205ENST00000509769 SPRR2FQ96RM1 72 aa1.24□□□□□ -2.21
USP53-205ENST00000509769 FSIP2Q5CZC0 6907 aa1.24□□□□□ -2.21
USP53-205ENST00000509769 AHNAKQ09666 5890 aaKnown RBP1.24□□□□□ -2.21
USP53-205ENST00000509769 KRTAP5-4Q6L8H1 288 aa1.24□□□□□ -2.21
USP53-205ENST00000509769 KRTAP19-5Q3LI72 72 aa1.23□□□□□ -2.21
USP53-205ENST00000509769 KRTAP5-7Q6L8G8 165 aa1.23□□□□□ -2.21
USP53-205ENST00000509769 KRTAP19-8Q3LI54 63 aa1.22□□□□□ -2.21
USP53-205ENST00000509769 MUC5BQ9HC84 5762 aaPredicted RBP1.22□□□□□ -2.21
USP53-205ENST00000509769 LCE5AQ5TCM9 118 aa1.22□□□□□ -2.21
USP53-205ENST00000509769 MT1FP04733 61 aa1.21□□□□□ -2.22
USP53-205ENST00000509769 MT1GP13640 62 aa1.18□□□□□ -2.22
USP53-205ENST00000509769 MT1LQ93083 61 aa1.18□□□□□ -2.22
USP53-205ENST00000509769 FCGBPQ9Y6R7 5405 aaPredicted RBP1.18□□□□□ -2.22
USP53-205ENST00000509769 MT1EP04732 61 aa1.16□□□□□ -2.22
USP53-205ENST00000509769 KMT2DO14686 5537 aa1.15□□□□□ -2.22
USP53-205ENST00000509769 KRTAP5-10Q6L8G5 202 aa1.14□□□□□ -2.23
USP53-205ENST00000509769 PRM1P04553 51 aa1.14□□□□□ -2.23
USP53-205ENST00000509769 KRTAP5-11Q6L8G4 156 aa1.14□□□□□ -2.23
USP53-205ENST00000509769 MT1AP04731 61 aa1.13□□□□□ -2.23
USP53-205ENST00000509769 LPAP08519 4548 aa1.11□□□□□ -2.23
USP53-205ENST00000509769 FLGP20930 4061 aaPredicted RBP1.11□□□□□ -2.23
USP53-205ENST00000509769 MACF1Q9UPN3 7388 aaKnown RBP1.11□□□□□ -2.23
USP53-205ENST00000509769 AHNAK2Q8IVF2 5795 aa1.1□□□□□ -2.23
USP53-205ENST00000509769 KRTAP5-8O75690 187 aa1.1□□□□□ -2.23
USP53-205ENST00000509769 MT1XP80297 61 aa1.08□□□□□ -2.24
USP53-205ENST00000509769 MT4P47944 62 aa1.06□□□□□ -2.24
USP53-205ENST00000509769 KRTAP19-3Q7Z4W3 81 aa1.06□□□□□ -2.24
USP53-205ENST00000509769 MT1BP07438 61 aa1.04□□□□□ -2.24
USP53-205ENST00000509769 MT1MQ8N339 61 aa1.04□□□□□ -2.24
USP53-205ENST00000509769 KRTAP5-5Q701N2 237 aaPredicted RBP1.04□□□□□ -2.24
USP53-205ENST00000509769 KRTAP4-4Q9BYR3 166 aa1.04□□□□□ -2.24
USP53-205ENST00000509769 MDN1Q9NU22 5596 aa1.02□□□□□ -2.25
USP53-205ENST00000509769 KRTAP5-1Q6L8H4 278 aa0.97□□□□□ -2.25
USP53-205ENST00000509769 MUC5ACP98088 5654 aa0.96□□□□□ -2.26
USP53-205ENST00000509769 KRTAP6-2Q3LI66 62 aa0.95□□□□□ -2.26
USP53-205ENST00000509769 KRTAP9-6A8MVA2 160 aa0.94□□□□□ -2.26
USP53-205ENST00000509769 KRTAP20-2Q3LI61 65 aa0.94□□□□□ -2.26
USP53-205ENST00000509769 MUC12Q9UKN1 5478 aa0.92□□□□□ -2.26
USP53-205ENST00000509769 LCE1BQ5T7P3 118 aa0.89□□□□□ -2.27
USP53-205ENST00000509769 KRTAP19-7Q3SYF9 63 aa0.86□□□□□ -2.27
USP53-205ENST00000509769 KRTAP6-1Q3LI64 71 aa0.8□□□□□ -2.28
USP53-205ENST00000509769 LCE1CQ5T751 118 aa0.78□□□□□ -2.29
USP53-205ENST00000509769 LCE1EQ5T753 118 aa0.78□□□□□ -2.29
USP53-205ENST00000509769 LCE1FQ5T754 118 aa0.78□□□□□ -2.29
USP53-205ENST00000509769 PHGR1C9JFL3 82 aa0.76□□□□□ -2.29
USP53-205ENST00000509769 OBSCNQ5VST9 7968 aa0.75□□□□□ -2.29
USP53-205ENST00000509769 SYNE1Q8NF91 8797 aaKnown RBP0.73□□□□□ -2.29
USP53-205ENST00000509769 KRTAP4-3Q9BYR4 195 aa0.72□□□□□ -2.29
USP53-205ENST00000509769 DSTQ03001 7570 aaKnown RBP0.72□□□□□ -2.29
USP53-205ENST00000509769 KRTAP21-1Q3LI58 79 aa0.68□□□□□ -2.3
USP53-205ENST00000509769 KRTAP21-2Q3LI59 83 aa0.6□□□□□ -2.31
USP53-205ENST00000509769 MUC19Q7Z5P9 8384 aa0.45□□□□□ -2.34
USP53-205ENST00000509769 MUC16Q8WXI7 14507 aa0.44□□□□□ -2.34
Retrieved 78 of 20,778 RNA–protein pairs in 165 ms